CmaCh01G003050.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G003050.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Late embryogenesis abundant protein Lea5
Location	Cma_Chr01 : 1479543 .. 1479951 (-)
Sequence length	279

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATCTCCAGCCTCGTTTCTCTCATCAGGTATTTATCCATCCAAAAAATTAAATATTTAAGGAAGAAAATCTAAATAAATATGTATAAATTTATAGTGTAAAATGCAATCCTTAGACAATTTTGTTAAGCTTATTTAAACGTGGTGTGTGTTGGACAGGCGGGGGTATAGGGCGGGGGCGACGGCGGCGGCACAAAGAGTGGTGTCTGGCACGGCGGCGGAAGGAGTTACTGCACGAAGTGGCGGAATGATAAAGAAGGAAGAAGAAGAAAGAAGTACAGAGATGGCGGCGTGGATCCCGGACCCGGTCACCGGCTACTACCGGCCGGAGAACTACACCATCGTGATCGACGAGGTTGATCTTCGTGCTATGCTATTGAAACCGAAAAGAAACGTAATGAATTGA

mRNA sequence

ATGAACATCTCCAGCCTCGTTTCTCTCATCAGGCGGGGGTATAGGGCGGGGGCGACGGCGGCGGCACAAAGAGTGGTGTCTGGCACGGCGGCGGAAGGAGTTACTGCACGAAGTGGCGGAATGATAAAGAAGGAAGAAGAAGAAAGAAGTACAGAGATGGCGGCGTGGATCCCGGACCCGGTCACCGGCTACTACCGGCCGGAGAACTACACCATCGTGATCGACGAGGTTGATCTTCGTGCTATGCTATTGAAACCGAAAAGAAACGTAATGAATTGA

Coding sequence (CDS)

ATGAACATCTCCAGCCTCGTTTCTCTCATCAGGCGGGGGTATAGGGCGGGGGCGACGGCGGCGGCACAAAGAGTGGTGTCTGGCACGGCGGCGGAAGGAGTTACTGCACGAAGTGGCGGAATGATAAAGAAGGAAGAAGAAGAAAGAAGTACAGAGATGGCGGCGTGGATCCCGGACCCGGTCACCGGCTACTACCGGCCGGAGAACTACACCATCGTGATCGACGAGGTTGATCTTCGTGCTATGCTATTGAAACCGAAAAGAAACGTAATGAATTGA

Protein sequence

MNISSLVSLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKKEEEERSTEMAAWIPDPVTGYYRPENYTIVIDEVDLRAMLLKPKRNVMN

Homology

[Close]

BLAST of CmaCh01G003050.1 vs. Swiss-Prot
Match: SAG21_ARATH (Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana GN=SAG21 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 8  SLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKKEEEERSTEMAAWIPDPVTGYYRP 67
          ++ RRGY   A  AAQ  VS     G  A +  ++KK+  E ST+  +W+PDP TGYYRP
Sbjct: 22 AIFRRGY---AATAAQGSVSSGGRSGAVASA--VMKKKGVEESTQKISWVPDPKTGYYRP 81

Query: 68 ENYTIVIDEVDLRAMLLKPKR 89
          E  +  ID  +LRA LL  K+
Sbjct: 82 ETGSNEIDAAELRAALLNNKQ 97

[Close]

BLAST of CmaCh01G003050.1 vs. Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-08
Identity = 34/78 (43.59%), Postives = 38/78 (48.72%), Query Frame = 1


Query: 7  VSLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKKEEEERSTEMAAWIPDPVTGYYR 66
          VS+ RRGY     AA         A G   R   M +    E     +AW PDPVTGYYR
Sbjct: 21 VSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYR 80

Query: 67 PENYTIVIDEVDLRAMLL 85
          PEN    ID  DLR M+L
Sbjct: 81 PENCGAEIDAADLREMML 98

[Close]

BLAST of CmaCh01G003050.1 vs. Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-08
Identity = 34/78 (43.59%), Postives = 38/78 (48.72%), Query Frame = 1


Query: 7  VSLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKKEEEERSTEMAAWIPDPVTGYYR 66
          VS+ RRGY     AA         A G   R   M +    E     +AW PDPVTGYYR
Sbjct: 21 VSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYR 80

Query: 67 PENYTIVIDEVDLRAMLL 85
          PEN    ID  +LR MLL
Sbjct: 81 PENCGAEIDAAELREMLL 98

[Close]

BLAST of CmaCh01G003050.1 vs. Swiss-Prot
Match: ARG2_VIGRR (Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata GN=ARG2 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.4e-08
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 2  NISSLVSLIRRGYRAGATA---AAQRVVSGTAAEGVTARSGGMIKK--EEEERSTEMAAW 61
          N+  L +L+  G+    T    AA    + +A  G  +  G M+ K  EE+ R  E  +W
Sbjct: 7  NVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSW 66

Query: 62 IPDPVTGYYRPENYTIVIDEVDLRAMLLKPKRN 90
          +PDPVTGYYRPEN T  ID  D+RA +L  K N
Sbjct: 67 VPDPVTGYYRPEN-TNEIDVADMRATVLGKKFN 98

[Close]

BLAST of CmaCh01G003050.1 vs. Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-07
Identity = 35/85 (41.18%), Postives = 44/85 (51.76%), Query Frame = 1


Query: 7  VSLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKKE----EEERSTEMAAWIPDPVT 66
          +S+ RRGY A A              G  +R+G M K +      E S   +AW PDP+T
Sbjct: 21 LSISRRGYAAAAPL------------GTISRTGIMEKNDLRPAVREDSGASSAWAPDPIT 80

Query: 67 GYYRPENYTIVIDEVDLRAMLLKPK 88
          GYYRPEN  + ID  +LR MLL  K
Sbjct: 81 GYYRPENRAVEIDPAELREMLLNHK 93

[Close]

BLAST of CmaCh01G003050.1 vs. TrEMBL
Match: A0A0A0KV78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001860 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-13
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 1


Query: 6   LVSLIRRGYRAG--ATAAAQRVVSGTAAEG----VTARSGGMIKKEEEERSTEMAA-WIP 65
           L +++RRGY A   A AA++R  + T A G     T   G +++KEE ERSTE AA WIP
Sbjct: 21  LNAIVRRGYTAEPMAMAASERATTSTPAAGGVLPATRSDGVIVEKEESERSTEKAAVWIP 80

Query: 66  DPVTGYYRPENYTIVIDEVDLRAMLLKPKRNVMN 93
           DPVTG YRPE+    +D VDLRA LLKP+RN +N
Sbjct: 81  DPVTGCYRPESNMDEMDAVDLRAKLLKPRRNTVN 114

[Close]

BLAST of CmaCh01G003050.1 vs. TrEMBL
Match: A0A059AX49_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01104 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.2e-10
Identity = 46/82 (56.10%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 8  SLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKK--EEEERSTEMAAWIPDPVTGYY 67
          S+ RRGY     AA+Q V S  A  G T RS  M KK  EE+ RSTE  +W+PDP TGYY
Sbjct: 22 SIARRGY----AAASQGVASSFAKTGAT-RSTVMSKKTGEEKARSTERVSWVPDPKTGYY 81

Query: 68 RPENYTIVIDEVDLRAMLLKPK 88
          RPEN    ID  +LRAMLLK K
Sbjct: 82 RPENRAEEIDVAELRAMLLKNK 98

[Close]

BLAST of CmaCh01G003050.1 vs. TrEMBL
Match: A0A0A0KTB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001850 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-10
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 3  ISSLVSLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKKEEEE----RSTEMAAWIP 62
          +++L  L RRGY              TA EGV AR GG++KK+EE     R  +  +W+P
Sbjct: 8  LNTLSILFRRGY-------------ATAPEGVAARLGGIMKKKEESLRIGREKKAVSWVP 67

Query: 63 DPVTGYYRPENYTIVIDEVDLRAMLL 85
          DPVTGYYRPEN    +D  DLRAMLL
Sbjct: 68 DPVTGYYRPENCGAEMDAADLRAMLL 80

[Close]

BLAST of CmaCh01G003050.1 vs. TrEMBL
Match: G9HVM5_CAMSI (Late embryogenesis abundant protein 3L-1 OS=Camellia sinensis GN=LEA3L-1 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = 1


Query: 7  VSLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKKEEEERSTEMAAWIPDPVTGYYR 66
          +++ RRGY     AA+Q V SG     VTAR G M KK+ EE +T+  +W+PDPVTGYYR
Sbjct: 21 LAVTRRGY----AAASQGVASGP----VTARGGVMGKKDGEEEATK-TSWVPDPVTGYYR 80

Query: 67 PENYTIVIDEVDLRAMLLKPK 88
          PEN    ID  +LR MLLK K
Sbjct: 81 PENKANEIDVAELREMLLKNK 92

[Close]

BLAST of CmaCh01G003050.1 vs. TrEMBL
Match: A0A059AWU9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01103 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-09
Identity = 45/82 (54.88%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 8  SLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKK--EEEERSTEMAAWIPDPVTGYY 67
          S  RRGY     AA+Q V S  A  G T RS  M KK  EE  RSTE  +W+PDP TGYY
Sbjct: 22 SFARRGY----AAASQGVASSVAKTGAT-RSAVMSKKTGEETARSTERVSWVPDPKTGYY 81

Query: 68 RPENYTIVIDEVDLRAMLLKPK 88
          RPEN    ID  +LRA LLK K
Sbjct: 82 RPENRAEEIDVAELRAALLKNK 98

[Close]

BLAST of CmaCh01G003050.1 vs. TAIR10
Match: AT4G02380.1 (AT4G02380.1 senescence-associated gene 21)

HSP 1 Score: 60.5 bits (145), Expect = 6.4e-10
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 8  SLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKKEEEERSTEMAAWIPDPVTGYYRP 67
          ++ RRGY   A  AAQ  VS     G  A +  ++KK+  E ST+  +W+PDP TGYYRP
Sbjct: 22 AIFRRGY---AATAAQGSVSSGGRSGAVASA--VMKKKGVEESTQKISWVPDPKTGYYRP 81

Query: 68 ENYTIVIDEVDLRAMLLKPKR 89
          E  +  ID  +LRA LL  K+
Sbjct: 82 ETGSNEIDAAELRAALLNNKQ 97

[Close]

BLAST of CmaCh01G003050.1 vs. TAIR10
Match: AT1G02820.1 (AT1G02820.1 Late embryogenesis abundant 3 (LEA3) family protein)

HSP 1 Score: 57.4 bits (137), Expect = 5.4e-09
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 14 YRAGATAAAQRVVSGTAAEGVTARSGGMIKKEEEERSTEMAAWIPDPVTGYYRPENYTIV 73
          +R G  AAA+  + G+        S   +KK   E S+E A W+PDP TGYYRPE  +  
Sbjct: 24 FRRGFAAAAKTALDGSV-------STAEMKKRAGEASSEKAPWVPDPKTGYYRPETVSEE 83

Query: 74 IDEVDLRAMLLKPKR 89
          ID  +LRA+LL  K+
Sbjct: 84 IDPAELRAILLNNKQ 91

[Close]

BLAST of CmaCh01G003050.1 vs. TAIR10
Match: AT4G15910.1 (AT4G15910.1 drought-induced 21)

HSP 1 Score: 50.1 bits (118), Expect = 8.7e-07
Identity = 33/81 (40.74%), Postives = 45/81 (55.56%), Query Frame = 1


Query: 9   LIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKKEEEERSTEMA--AWIPDPVTGYYR 68
           ++RR Y     A +Q V +   ++G + R   M+ K E+    + A  AW PDPVTGYYR
Sbjct: 26  VLRRSY----VATSQNVTAAGLSKGGSTRV--MVGKMEQRGLDQEAESAWGPDPVTGYYR 85

Query: 69  PENYTIVIDEVDLRAMLLKPK 88
           P N    ID  +LR +LLK K
Sbjct: 86  PSNRAAEIDPAELRELLLKNK 100

[Close]

BLAST of CmaCh01G003050.1 vs. NCBI nr
Match: gi|700197661|gb|KGN52819.1| (hypothetical protein Csa_4G001860 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 4.5e-13
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 1


Query: 6   LVSLIRRGYRAG--ATAAAQRVVSGTAAEG----VTARSGGMIKKEEEERSTEMAA-WIP 65
           L +++RRGY A   A AA++R  + T A G     T   G +++KEE ERSTE AA WIP
Sbjct: 21  LNAIVRRGYTAEPMAMAASERATTSTPAAGGVLPATRSDGVIVEKEESERSTEKAAVWIP 80

Query: 66  DPVTGYYRPENYTIVIDEVDLRAMLLKPKRNVMN 93
           DPVTG YRPE+    +D VDLRA LLKP+RN +N
Sbjct: 81  DPVTGCYRPESNMDEMDAVDLRAKLLKPRRNTVN 114

[Close]

BLAST of CmaCh01G003050.1 vs. NCBI nr
Match: gi|659108673|ref|XP_008454328.1| (PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 7.6e-13
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1


Query: 18 ATAAAQRVVSGTAAEGV--TARSGGMIKKEEEERSTE---MAAWIPDPVTGYYRPENYTI 77
          A AA++RV S +A  GV   A S G++KKEE ERST     AAW+PDPVTGYYRPENY  
Sbjct: 2  AMAASERVTSTSAGGGVLPAAGSDGVMKKEESERSTTEKAAAAWMPDPVTGYYRPENYVD 61

Query: 78 VIDEVDLRAMLLKPKRNVMN 93
           +D VDLR  LLK +RN +N
Sbjct: 62 EMDPVDLRDKLLKARRNTIN 81

[Close]

BLAST of CmaCh01G003050.1 vs. NCBI nr
Match: gi|702435555|ref|XP_010069902.1| (PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Eucalyptus grandis])

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-10
Identity = 46/82 (56.10%), Postives = 52/82 (63.41%), Query Frame = 1


Query: 8  SLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKK--EEEERSTEMAAWIPDPVTGYY 67
          S+ RRGY     AA+Q V S  A  G T RS  M KK  EE+ RSTE  +W+PDP TGYY
Sbjct: 22 SIARRGY----AAASQGVASSFAKTGAT-RSTVMSKKTGEEKARSTERVSWVPDPKTGYY 81

Query: 68 RPENYTIVIDEVDLRAMLLKPK 88
          RPEN    ID  +LRAMLLK K
Sbjct: 82 RPENRAEEIDVAELRAMLLKNK 98

[Close]

BLAST of CmaCh01G003050.1 vs. NCBI nr
Match: gi|778689326|ref|XP_011652940.1| (PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 3  ISSLVSLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKKEEEE----RSTEMAAWIP 62
          +++L  L RRGY              TA EGV AR GG++KK+EE     R  +  +W+P
Sbjct: 8  LNTLSILFRRGY-------------ATAPEGVAARLGGIMKKKEESLRIGREKKAVSWVP 67

Query: 63 DPVTGYYRPENYTIVIDEVDLRAMLL 85
          DPVTGYYRPEN    +D  DLRAMLL
Sbjct: 68 DPVTGYYRPENCGAEMDAADLRAMLL 80

[Close]

BLAST of CmaCh01G003050.1 vs. NCBI nr
Match: gi|363497938|gb|AEW24432.1| (late embryogenesis abundant protein 3L-1 [Camellia sinensis])

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = 1


Query: 7  VSLIRRGYRAGATAAAQRVVSGTAAEGVTARSGGMIKKEEEERSTEMAAWIPDPVTGYYR 66
          +++ RRGY     AA+Q V SG     VTAR G M KK+ EE +T+  +W+PDPVTGYYR
Sbjct: 21 LAVTRRGY----AAASQGVASGP----VTARGGVMGKKDGEEEATK-TSWVPDPVTGYYR 80

Query: 67 PENYTIVIDEVDLRAMLLKPK 88
          PEN    ID  +LR MLLK K
Sbjct: 81 PENKANEIDVAELREMLLKNK 92

The following BLAST results are available for this feature:

BLAST of CmaCh01G003050.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAG21_ARATH	1.1e-08	44.44	Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana GN=...	[more]
LEA5A_GOSHI	4.3e-08	43.59	Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 ...	[more]
LEA5D_GOSHI	4.3e-08	43.59	Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 ...	[more]
ARG2_VIGRR	7.4e-08	40.86	Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata GN=ARG2 ...	[more]
LEA5_CITSI	2.8e-07	41.18	Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1	[more]

BLAST of CmaCh01G003050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV78_CUCSA	3.1e-13	53.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001860 PE=4 SV=1	[more]
A0A059AX49_EUCGR	4.2e-10	56.10	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01104 PE=4 SV=1	[more]
A0A0A0KTB8_CUCSA	7.2e-10	47.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001850 PE=4 SV=1	[more]
G9HVM5_CAMSI	1.6e-09	53.09	Late embryogenesis abundant protein 3L-1 OS=Camellia sinensis GN=LEA3L-1 PE=2 SV...	[more]
A0A059AWU9_EUCGR	2.1e-09	54.88	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01103 PE=4 SV=1	[more]

BLAST of CmaCh01G003050.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02380.1	6.4e-10	44.44	senescence-associated gene 21	[more]
AT1G02820.1	5.4e-09	42.67	Late embryogenesis abundant 3 (LEA3) family protein	[more]
AT4G15910.1	8.7e-07	40.74	drought-induced 21	[more]

BLAST of CmaCh01G003050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197661\|gb\|KGN52819.1\|	4.5e-13	53.19	hypothetical protein Csa_4G001860 [Cucumis sativus]	[more]
gi\|659108673\|ref\|XP_008454328.1\|	7.6e-13	58.75	PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis melo]	[more]
gi\|702435555\|ref\|XP_010069902.1\|	6.1e-10	56.10	PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Eucalyptus grandis]	[more]
gi\|778689326\|ref\|XP_011652940.1\|	1.0e-09	47.67	PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis sativus]	[more]
gi\|363497938\|gb\|AEW24432.1\|	2.3e-09	53.09	late embryogenesis abundant protein 3L-1 [Camellia sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004926	LEA_3

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh01G003050	CmaCh01G003050	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh01G003050.1	CmaCh01G003050.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G003050.1.CDS.2	CmaCh01G003050.1.CDS.2	CDS
CmaCh01G003050.1.CDS.1	CmaCh01G003050.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G003050.1.exon.2	CmaCh01G003050.1.exon.2	exon
CmaCh01G003050.1.exon.1	CmaCh01G003050.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004926	Late embryogenesis abundant protein, LEA5-type	PFAM	PF03242	LEA_3	coord: 8..84 score: 8.6
None	No IPR available	PANTHER	PTHR33509	FAMILY NOT NAMED	coord: 3..91 score: 8.9
None	No IPR available	PANTHER	PTHR33509:SF5	LATE EMBRYOGENESIS ABUNDANT 3 (LEA3) FAMILY PROTEIN	coord: 3..91 score: 8.9