CmaCh01G002500.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAAAAGTAAACTGCTGAAGCGATTGGTATCGTTTTGAAAGTTCAGTGTTCTGTGGAGTTTTAGTGGCGGGCACAGATGATGGATTGTTATGGCCTTTGTTTTCTTTTGCGTGCATTTTTTTATAAGAATTGTTCGTACTGTCGATCTGAATTTGTGGTTAAAAGGCGACTGGTTCATCTTTTGTAGTCGAGTGATAGTATTTAACAAATTATGTGACGTGTTACTGAGCATCTGAAGGTGGAGAATTGACGGAGATTGGGTTGTTTCATCATGCACTTTTTTTAAGAAGGATTTTCCTCGAGTTAAACATTGCACATTGAATATATTAATGATTCTGGATCCTTGATTATGAGTTCATGGAATATTCCATAGAAAAAGGATATTAGATCAGTGAGTTCAAATGCAGTAGTGGAGGATCATATTGGTTCGTAATATTTGTTGTCTTATGATGTTTTTAGCTAGTACTGTCGTAGTTTAGAATTTGAATGTGGATACTGTACTGGGAAACAGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGTTAGTTAGTTTTTCTCTCATCCAGTCAATTCTTACTTTCTTCTTTTCCACGAGGCAAGGAAATCAAAATTGAAGTGAAACATGTGAATCTCACAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCATGCTATCAAGGTTAGAATGCAAAGTATTTCATTATTTTCTGTTTATGGGCTCTCACTATTCAGTATCTTGTTAATTTAGTCCACTTGTCCGAACAATTCAAGCATATAGTGGTTTTCAAACTGCATACTTAAGTTACCCCCTTAAAATAAATGCCACTTGACTGCTATACCTGTGAAGGCATCTGGTGCTAGGCTCTGAATGCCCCTTCATCTTTGGGGTAGTATTCTATTCTTCATTTCGGAACACAACATTCGCATTTGGGGTGATATATTTGGTTGGGACTCTGATTTCAATTGCAAAATTTTTTCTTAAAGGTCCAAATGTGGAAAAGAAACTTTCATCGGTTAGCTGAGTATTTTGTCGTTTCCTTGTTTCATTTCTAACTAAATGAATTAATTGGCAAATGCAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTTTTCTAGATCCGTTGTCTGCTCTTAGCTTTTGTGATTTCTTTTTTACAAAATCAATTGTTATCGGAGATTTTACTGCATTACTCTGTTTGGTTCACCAATTAGTTCTAAACGTCGTAACAATACTATTTAGCTCAAGCCATCTTATCTCAATTATCAAATTTCCAAATTTTTTTTGCTTTTCGTTGAGTCTGTCTCGTAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGTGGAAAAAAATAAATTTTTTAGTTGAGTTGTTTCTCAAAGAAACTTGTGTTTGAAGTGTTTTCATAGCATAACCATTTGATTTTTTAGAATAATTATTGTTAGCTTGCATTTAGTTCAGGCAATTATATTCATCCATTGACTTAACAGTGCTTGAAACTCACATAAGAGCCAATGTAGCCAATTGTAATTTTGAACTCACATCTTAACACCTATCCTAAAAGGCTCTACCAATCTCTCTGATTAACAAACACAACGAAAAACTTGAAGAAAAGATAAGCCACCCCGTATCTATAACATATTTGGATCCACTGAGAACCAAATCATGTATATATGAAGCAAAAGCCAATTACCACAATAACGCTAAATCATTAAAGAGTGAAACGAGGTGCAAGTGATTAACACTGCTGAAGAGACACAAAATTAACTCCGATTGTCAAAAAATCATGTTACATTTGAAAGGAAGAACAGAACAATCCAGTTCAAAATCCAAAATATCCATGTTTTGCACTAGTCTTTTCTCAGTAGTATTTGCAGCAATTACACAAAAACGACCATATCGATACACAAATAAATCTTAAAGTCGTCCATTCAGATGTCCCCAAAGGGATGAATCTACTATGCAAAATTGTGCCACAATGGTGTAAGAATCTTATCAAAGCCCTCCAGTGTTCCCCTAAACTATGCAGCACATGACACAATGAATAAAGTTAATGGAGTTCCAATTTCCCGTATCATATAATGGATGCTATTCATATAGCTACGAAAATTTGAACTGTGATGCACCTGCCGCATGATATTGTGTAGAATTGAACTAGAAGAAGCAAACATAATATGGATAAAGTAAAGACATTTGTTGTCGTACGAGCAAAATTTGAAATTCTATTAAATTTCAAGCTTTTCTCTTTGAAATGCTAATAACAATACTGATCCAAACAGCTAAATGGACATTTAGCTAAGAAAAACAATCAATTCCATCACATCTAGGTAGATATGATCAGCTTTTAGAGAATTCTAACAAAAGTCAGTATGGAACTTTGAAATGCCACGCTTTCGCGTCATAATCCTACCTCGCATTCTTAATTTGAACCTTTATCCTTGCCTTGAGTACCAACTGCATCAGTCACCAGAGCTATTGGCCTTTGATCCATTACCTCGTCGATAATGCCAAACTCTTTGGCCTCTTCTGGGGTCATGAAATAATCCCTATCCATATACTCTTTGATAGTATCTACTGGTTGTGACGTATGCTTGGAGTACAGCTCGTTAAGTGCATCCCAAACCCGAACGATCTGTTTCGTGTGAATCGTTATGTCCTTTGCTTGCCCACTGTATCCACCAGAAGGCTGGTGAATCATGATAGTTGCATTAGGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCTAGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA ATGGAAAAATACTGTCGTAGTTTAGAATTTGAATGTGGATACTGTACTGGGAAACAGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCATGCTATCAAGGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCTAGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA ATGGAAAAATACTGTCGTAGTTTAGAATTTGAATGTGGATACTGTACTGGGAAACAGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCTAAAACTACCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCATGCTATCAAGGAAGCGATCGTCTCTCACCCTTGGCACCAGCAGCTAGAAGAAGAGAAGCCATTGAAGCAGCCTGACCCAAACAGATGGTATTGA MEKYCRSLEFECGYCTGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKEAIVSHPWHQQLEEEKPLKQPDPNRWY
BLAST of CmaCh01G002500.1 vs. Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3) HSP 1 Score: 170.2 bits (430), Expect = 1.5e-41 Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3) HSP 1 Score: 160.6 bits (405), Expect = 1.2e-38 Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3) HSP 1 Score: 141.7 bits (356), Expect = 5.5e-33 Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. Swiss-Prot
Match: RL44_CRYNB (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RPL44 PE=3 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 7.2e-33 Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. Swiss-Prot
Match: RL44_CRYNJ (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RPL44 PE=3 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 7.2e-33 Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. TrEMBL
Match: F6HF50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02090 PE=3 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 8.6e-41 Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. TrEMBL
Match: A0A068V1D2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041145001 PE=3 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 2.5e-40 Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. TrEMBL
Match: G7L0P4_MEDTR (60S ribosomal protein L36a OS=Medicago truncatula GN=MTR_2g008180 PE=2 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 3.3e-40 Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. TrEMBL
Match: I3S6Y0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 3.3e-40 Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. TrEMBL
Match: I1KUF8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G181300 PE=3 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 5.6e-40 Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. TAIR10
Match: AT3G23390.1 (AT3G23390.1 Zinc-binding ribosomal protein family protein) HSP 1 Score: 160.6 bits (405), Expect = 6.5e-40 Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. TAIR10
Match: AT4G14320.2 (AT4G14320.2 Zinc-binding ribosomal protein family protein) HSP 1 Score: 160.6 bits (405), Expect = 6.5e-40 Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. NCBI nr
Match: gi|661881757|emb|CDP14595.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 172.9 bits (437), Expect = 3.6e-40 Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. NCBI nr
Match: gi|357445721|ref|XP_003593138.1| (60S ribosomal protein L36a [Medicago truncatula]) HSP 1 Score: 172.6 bits (436), Expect = 4.7e-40 Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. NCBI nr
Match: gi|297737944|emb|CBI27145.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 172.2 bits (435), Expect = 6.1e-40 Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. NCBI nr
Match: gi|947095349|gb|KRH43934.1| (hypothetical protein GLYMA_08G181300 [Glycine max]) HSP 1 Score: 171.8 bits (434), Expect = 8.0e-40 Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of CmaCh01G002500.1 vs. NCBI nr
Match: gi|297736252|emb|CBI24890.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 171.8 bits (434), Expect = 8.0e-40 Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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