CmaCh00G005230.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G005230.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal protein small subunit 7
Location	Cma_Chr00 : 37912024 .. 37912470 (-)
Sequence length	447

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGCTTGGATGGTGAGCAAAAACAATTGATCAAGAAGTTGGTCAACTTTCGCATGAAAGAAGGTAAAAGAACGAGAGTTCGTGCTATTGTTTATCAAACTTTTCATCGCCCAGCTCAAACTGAACGCGATGTAATCAAACTGATGGTTGACGCCGTAGACAATATAAAGCCCATATGCGAAGTCGAAAAAGTAGGAGTAGCAGGTACTATTTATGATGTCCCTGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCTGCTTTCAAACGACGTATAAGCTACAGGATAAGCTTAGAGAAATGTTCATTTGCTGAGATACTTGATGCTTACCGAAAGAGGGGAATTGCACGTCAGAAAAGGGAGAATCTTCATAGACTGGCTTCCACCAATCGAAGTTTCGCGCATTTCAGATGGTGGTAA

mRNA sequence

ATGGGGGGCTTGGATGGTGAGCAAAAACAATTGATCAAGAAGTTGGTCAACTTTCGCATGAAAGAAGGTAAAAGAACGAGAGTTCGTGCTATTGTTTATCAAACTTTTCATCGCCCAGCTCAAACTGAACGCGATGTAATCAAACTGATGGTTGACGCCGTAGACAATATAAAGCCCATATGCGAAGTCGAAAAAGTAGGAGTAGCAGGTACTATTTATGATGTCCCTGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCTGCTTTCAAACGACGTATAAGCTACAGGATAAGCTTAGAGAAATGTTCATTTGCTGAGATACTTGATGCTTACCGAAAGAGGGGAATTGCACGTCAGAAAAGGGAGAATCTTCATAGACTGGCTTCCACCAATCGAAGTTTCGCGCATTTCAGATGGTGGTAA

Coding sequence (CDS)

ATGGGGGGCTTGGATGGTGAGCAAAAACAATTGATCAAGAAGTTGGTCAACTTTCGCATGAAAGAAGGTAAAAGAACGAGAGTTCGTGCTATTGTTTATCAAACTTTTCATCGCCCAGCTCAAACTGAACGCGATGTAATCAAACTGATGGTTGACGCCGTAGACAATATAAAGCCCATATGCGAAGTCGAAAAAGTAGGAGTAGCAGGTACTATTTATGATGTCCCTGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCTGCTTTCAAACGACGTATAAGCTACAGGATAAGCTTAGAGAAATGTTCATTTGCTGAGATACTTGATGCTTACCGAAAGAGGGGAATTGCACGTCAGAAAAGGGAGAATCTTCATAGACTGGCTTCCACCAATCGAAGTTTCGCGCATTTCAGATGGTGGTAA

Protein sequence

MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPICEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARQKRENLHRLASTNRSFAHFRWW

Homology

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BLAST of CmaCh00G005230.1 vs. Swiss-Prot
Match: RT07_ARATH (Ribosomal protein S7, mitochondrial OS=Arabidopsis thaliana GN=RPS7 PE=2 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.2e-73
Identity = 140/148 (94.59%), Postives = 144/148 (97.30%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLDGEQK LIKKLVNFRMKEGKRTRVRAIVYQTFHRPA+TERDVIKLMVDAV+NIKPI
Sbjct: 1   MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEV KVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAY+
Sbjct: 61  CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRG AR+KRENLH LASTNRSFAHFRWW
Sbjct: 121 KRGSARRKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. Swiss-Prot
Match: RT07_WHEAT (Ribosomal protein S7, mitochondrial OS=Triticum aestivum GN=RPS7 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 6.4e-70
Identity = 134/148 (90.54%), Postives = 141/148 (95.27%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MG  DGEQK+LIKKLVNFRM +GKRTRVRAIVY+TFHR A+TERDVIKLMVDAVDNIKPI
Sbjct: 1   MGDFDGEQKELIKKLVNFRMIDGKRTRVRAIVYKTFHRLARTERDVIKLMVDAVDNIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEV KVGVAGTIYDVPGIVARDRQQTLAIRWIL AAFKRRISYRISLEKCSFAEILDAYR
Sbjct: 61  CEVVKVGVAGTIYDVPGIVARDRQQTLAIRWILGAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRGI+R++RENLH LASTNRSFAHFRWW
Sbjct: 121 KRGISRKRRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. Swiss-Prot
Match: RT07_BETVU (Ribosomal protein S7, mitochondrial OS=Beta vulgaris GN=RPS7 PE=2 SV=2)

HSP 1 Score: 261.2 bits (666), Expect = 7.1e-69
Identity = 132/148 (89.19%), Postives = 139/148 (93.92%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLD EQKQLIKKLVNF MKEGKRT+VRAIVYQTFHR A+TE DVIKLM+DAV+NIKPI
Sbjct: 1   MGGLDSEQKQLIKKLVNFHMKEGKRTKVRAIVYQTFHRLARTEGDVIKLMIDAVENIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           C+VEKV VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKC F EILDAYR
Sbjct: 61  CKVEKVRVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCLFDEILDAYR 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRGI+R+KRENLH LAS NRSFAHFRWW
Sbjct: 121 KRGISRKKRENLHGLASANRSFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. Swiss-Prot
Match: RT07_MARPO (Ribosomal protein S7, mitochondrial OS=Marchantia polymorpha GN=RPS7 PE=3 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 4.6e-44
Identity = 91/147 (61.90%), Postives = 123/147 (83.67%), Query Frame = 1


Query: 3   GLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPICE 62
           GL+G+QKQLIKKLV+  M +GK+TR RAIVY+TFHR A    DVIKL+V+A++N+KPICE
Sbjct: 85  GLNGKQKQLIKKLVHICMIDGKKTRSRAIVYKTFHRLAP-HGDVIKLLVNAIENVKPICE 144

Query: 63  VEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYR-ISLEKCSFAEILDAYRK 122
           V+KV ++GT   VP I+A +RQ+TLAIRW+LE+A KRR+  + ISL++C +AEIL+A +K
Sbjct: 145 VKKVRISGTTRLVPSIIATNRQETLAIRWMLESAAKRRMGKKSISLDQCLYAEILEASQK 204

Query: 123 RGIARQKRENLHRLASTNRSFAHFRWW 149
            GIAR+KR++LH+LA  NRSF+H+RWW
Sbjct: 205 MGIARKKRDDLHKLAEANRSFSHYRWW 230

[Close]

BLAST of CmaCh00G005230.1 vs. Swiss-Prot
Match: RS7_PELUB (30S ribosomal protein S7 OS=Pelagibacter ubique (strain HTCC1062) GN=rpsG PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.5e-21
Identity = 55/138 (39.86%), Postives = 86/138 (62.32%), Query Frame = 1


Query: 11  LIKKLVNFRMKEGKRTRVRAIVYQTFHR-PAQTERDVIKLMVDAVDNIKPICEVEKVGVA 70
           +I KL+N  M +GK+     IVY+   +  ++T+ + I +  +A++NIKP  EV    V 
Sbjct: 22  IIPKLINSIMYDGKKVVAEKIVYEAIEKIKSKTKEEPINVFNEAINNIKPTVEVRSRRVG 81

Query: 71  GTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARQKR 130
           G  Y VP  V   R Q LAIRW+++A+ KR+  +   +    F E+ DAY K+G A +KR
Sbjct: 82  GATYQVPVEVKTKRAQALAIRWLVDASRKRKDKH---MSDKIFNELYDAYEKKGSAVKKR 141

Query: 131 ENLHRLASTNRSFAHFRW 148
           E++H++A +N++FAHFRW
Sbjct: 142 EDVHKMAESNKAFAHFRW 156

[Close]

BLAST of CmaCh00G005230.1 vs. TrEMBL
Match: A0A142BZ01_ZIZJJ (Ribosomal protein S7 OS=Ziziphus jujuba GN=rps7 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.6e-75
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAV+NIKPI
Sbjct: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVENIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR
Sbjct: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRGIAR+KRENLHRLASTNRSFAHFRWW
Sbjct: 121 KRGIARKKRENLHRLASTNRSFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. TrEMBL
Match: A0A0M4R6T5_CANSA (Ribosomal protein S7 OS=Cannabis sativa GN=rps7 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.0e-75
Identity = 145/148 (97.97%), Postives = 147/148 (99.32%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAV+NIKPI
Sbjct: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVENIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR
Sbjct: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRGIAR+KRENLHRLASTNR FAHFRWW
Sbjct: 121 KRGIARKKRENLHRLASTNRRFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. TrEMBL
Match: D5I3F4_CUCPE (Ribosomal protein S7 OS=Cucurbita pepo GN=rps7 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.3e-74
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHR AQTERDVIKLMVDAVDNIKPI
Sbjct: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRLAQTERDVIKLMVDAVDNIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEVEKVGVAGT+YDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKC FAEILDAYR
Sbjct: 61  CEVEKVGVAGTLYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCLFAEILDAYR 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRGIARQKRENLHRLASTNRSFAHFRWW
Sbjct: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. TrEMBL
Match: D5I3C7_CITLA (Ribosomal protein S7 OS=Citrullus lanatus GN=rps7 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-73
Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHR AQTERDVIKLMVDAV+NIKPI
Sbjct: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRLAQTERDVIKLMVDAVENIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKC FAEILDAYR
Sbjct: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCLFAEILDAYR 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRGIAR+KRENLHRLASTNRSFAHFRWW
Sbjct: 121 KRGIARKKRENLHRLASTNRSFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. TrEMBL
Match: A0A0M4MPL4_9MAGN (Ribosomal protein S7 OS=Heuchera parviflora var. saurensis GN=rps7 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.5e-73
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLD EQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPA+TERDVIKLMVDAV+NIKPI
Sbjct: 1   MGGLDSEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR
Sbjct: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRGIAR+KRENLH LASTNRSFAHFRWW
Sbjct: 121 KRGIARKKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. TAIR10
Match: AT2G07696.1 (AT2G07696.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 276.9 bits (707), Expect = 7.0e-75
Identity = 140/148 (94.59%), Postives = 144/148 (97.30%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLDGEQK LIKKLVNFRMKEGKRTRVRAIVYQTFHRPA+TERDVIKLMVDAV+NIKPI
Sbjct: 1   MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEV KVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAY+
Sbjct: 61  CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRG AR+KRENLH LASTNRSFAHFRWW
Sbjct: 121 KRGSARRKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. TAIR10
Match: ATMG01270.1 (ATMG01270.1 mitochondrial ribosomal protein S7)

HSP 1 Score: 276.9 bits (707), Expect = 7.0e-75
Identity = 140/148 (94.59%), Postives = 144/148 (97.30%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLDGEQK LIKKLVNFRMKEGKRTRVRAIVYQTFHRPA+TERDVIKLMVDAV+NIKPI
Sbjct: 1   MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEV KVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAY+
Sbjct: 61  CEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQ 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRG AR+KRENLH LASTNRSFAHFRWW
Sbjct: 121 KRGSARRKRENLHGLASTNRSFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. TAIR10
Match: ATCG01240.1 (ATCG01240.1 ribosomal protein S7)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13
Identity = 46/143 (32.17%), Postives = 82/143 (57.34%), Query Frame = 1


Query: 8   QKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQ-TERDVIKLMVDAVDNIKPICEVEKV 67
           + +L+  LVN  +K GK++    I+Y+   +  Q TE + + ++  A+  + P   V+  
Sbjct: 19  RNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKAR 78

Query: 68  GVAGTIYDVPGIVARDRQQTLAIRWILEAAFKR---RISYRISLEKCSFAEILDAYRKRG 127
            V G+ + VP  +   + + LAIRW+L A+ KR    +++++S      +E++DA +  G
Sbjct: 79  RVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLS------SELVDAAKGSG 138

Query: 128 IARQKRENLHRLASTNRSFAHFR 147
            A +K+E  HR+A  NR+FAHFR
Sbjct: 139 DAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh00G005230.1 vs. TAIR10
Match: ATCG00900.1 (ATCG00900.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13
Identity = 46/143 (32.17%), Postives = 82/143 (57.34%), Query Frame = 1


Query: 8   QKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQ-TERDVIKLMVDAVDNIKPICEVEKV 67
           + +L+  LVN  +K GK++    I+Y+   +  Q TE + + ++  A+  + P   V+  
Sbjct: 19  RNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKAR 78

Query: 68  GVAGTIYDVPGIVARDRQQTLAIRWILEAAFKR---RISYRISLEKCSFAEILDAYRKRG 127
            V G+ + VP  +   + + LAIRW+L A+ KR    +++++S      +E++DA +  G
Sbjct: 79  RVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLS------SELVDAAKGSG 138

Query: 128 IARQKRENLHRLASTNRSFAHFR 147
            A +K+E  HR+A  NR+FAHFR
Sbjct: 139 DAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh00G005230.1 vs. NCBI nr
Match: gi|1016470801|ref|YP_009241662.1| (ribosomal protein S7 (mitochondrion) [Ziziphus jujuba])

HSP 1 Score: 290.0 bits (741), Expect = 2.3e-75
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAV+NIKPI
Sbjct: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVENIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR
Sbjct: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRGIAR+KRENLHRLASTNRSFAHFRWW
Sbjct: 121 KRGIARKKRENLHRLASTNRSFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. NCBI nr
Match: gi|1016880331|ref|YP_009243658.1| (ribosomal protein S7 (mitochondrion) [Cannabis sativa])

HSP 1 Score: 288.1 bits (736), Expect = 8.7e-75
Identity = 145/148 (97.97%), Postives = 147/148 (99.32%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAV+NIKPI
Sbjct: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVENIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR
Sbjct: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRGIAR+KRENLHRLASTNR FAHFRWW
Sbjct: 121 KRGIARKKRENLHRLASTNRRFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. NCBI nr
Match: gi|295311708|ref|YP_003587368.1| (ribosomal protein S7 [Cucurbita pepo])

HSP 1 Score: 286.2 bits (731), Expect = 3.3e-74
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHR AQTERDVIKLMVDAVDNIKPI
Sbjct: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRLAQTERDVIKLMVDAVDNIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEVEKVGVAGT+YDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKC FAEILDAYR
Sbjct: 61  CEVEKVGVAGTLYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCLFAEILDAYR 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRGIARQKRENLHRLASTNRSFAHFRWW
Sbjct: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. NCBI nr
Match: gi|295311664|ref|YP_003587257.1| (ribosomal protein S7 [Citrullus lanatus])

HSP 1 Score: 283.9 bits (725), Expect = 1.6e-73
Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHR AQTERDVIKLMVDAV+NIKPI
Sbjct: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRLAQTERDVIKLMVDAVENIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKC FAEILDAYR
Sbjct: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCLFAEILDAYR 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRGIAR+KRENLHRLASTNRSFAHFRWW
Sbjct: 121 KRGIARKKRENLHRLASTNRSFAHFRWW 148

[Close]

BLAST of CmaCh00G005230.1 vs. NCBI nr
Match: gi|927682212|gb|ALE29224.1| (ribosomal protein S7 (mitochondrion) [Heuchera parviflora var. saurensis])

HSP 1 Score: 283.5 bits (724), Expect = 2.1e-73
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 1   MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPAQTERDVIKLMVDAVDNIKPI 60
           MGGLD EQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPA+TERDVIKLMVDAV+NIKPI
Sbjct: 1   MGGLDSEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPI 60

Query: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120
           CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR
Sbjct: 61  CEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYR 120

Query: 121 KRGIARQKRENLHRLASTNRSFAHFRWW 149
           KRGIAR+KRENLH LASTNRSFAHFRWW
Sbjct: 121 KRGIARKKRENLHGLASTNRSFAHFRWW 148

The following BLAST results are available for this feature:

BLAST of CmaCh00G005230.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RT07_ARATH	1.2e-73	94.59	Ribosomal protein S7, mitochondrial OS=Arabidopsis thaliana GN=RPS7 PE=2 SV=1	[more]
RT07_WHEAT	6.4e-70	90.54	Ribosomal protein S7, mitochondrial OS=Triticum aestivum GN=RPS7 PE=3 SV=1	[more]
RT07_BETVU	7.1e-69	89.19	Ribosomal protein S7, mitochondrial OS=Beta vulgaris GN=RPS7 PE=2 SV=2	[more]
RT07_MARPO	4.6e-44	61.90	Ribosomal protein S7, mitochondrial OS=Marchantia polymorpha GN=RPS7 PE=3 SV=2	[more]
RS7_PELUB	5.5e-21	39.86	30S ribosomal protein S7 OS=Pelagibacter ubique (strain HTCC1062) GN=rpsG PE=3 S...	[more]

BLAST of CmaCh00G005230.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A142BZ01_ZIZJJ	1.6e-75	98.65	Ribosomal protein S7 OS=Ziziphus jujuba GN=rps7 PE=4 SV=1	[more]
A0A0M4R6T5_CANSA	6.0e-75	97.97	Ribosomal protein S7 OS=Cannabis sativa GN=rps7 PE=4 SV=1	[more]
D5I3F4_CUCPE	2.3e-74	97.97	Ribosomal protein S7 OS=Cucurbita pepo GN=rps7 PE=4 SV=1	[more]
D5I3C7_CITLA	1.1e-73	97.30	Ribosomal protein S7 OS=Citrullus lanatus GN=rps7 PE=4 SV=1	[more]
A0A0M4MPL4_9MAGN	1.5e-73	96.62	Ribosomal protein S7 OS=Heuchera parviflora var. saurensis GN=rps7 PE=4 SV=1	[more]

BLAST of CmaCh00G005230.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07696.1	7.0e-75	94.59	Ribosomal protein S7p/S5e family protein	[more]
ATMG01270.1	7.0e-75	94.59	ATMG01270.1 mitochondrial ribosomal protein S7	[more]
ATCG01240.1	1.5e-13	32.17	ATCG01240.1 ribosomal protein S7	[more]
ATCG00900.1	1.5e-13	32.17	ATCG00900.1 Ribosomal protein S7p/S5e family protein	[more]

BLAST of CmaCh00G005230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1016470801\|ref\|YP_009241662.1\|	2.3e-75	98.65	ribosomal protein S7 (mitochondrion) [Ziziphus jujuba]	[more]
gi\|1016880331\|ref\|YP_009243658.1\|	8.7e-75	97.97	ribosomal protein S7 (mitochondrion) [Cannabis sativa]	[more]
gi\|295311708\|ref\|YP_003587368.1\|	3.3e-74	97.97	ribosomal protein S7 [Cucurbita pepo]	[more]
gi\|295311664\|ref\|YP_003587257.1\|	1.6e-73	97.30	ribosomal protein S7 [Citrullus lanatus]	[more]
gi\|927682212\|gb\|ALE29224.1\|	2.1e-73	96.62	ribosomal protein S7 (mitochondrion) [Heuchera parviflora var. saurensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000235	Ribosomal_S5/S7
IPR005717	Ribosomal_S7_bac/org-type
IPR023798	Ribosomal_S7_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0015935	small ribosomal subunit

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh00G005230	CmaCh00G005230	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh00G005230.1	CmaCh00G005230.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G005230.1.CDS.1	CmaCh00G005230.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G005230.1.exon.1	CmaCh00G005230.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000235	Ribosomal protein S5/S7	PIR	PIRSF002122	RPS7p_RPS7a_RPS5e_RPS7o	coord: 3..148 score: 7.4
IPR000235	Ribosomal protein S5/S7	PANTHER	PTHR11205	RIBOSOMAL PROTEIN S7	coord: 10..147 score: 1.9E
IPR005717	Ribosomal protein S7, bacterial/organellar-type	TIGRFAMs	TIGR01029	TIGR01029	coord: 7..147 score: 4.6
IPR023798	Ribosomal protein S7 domain	GENE3D	G3DSA:1.10.455.10		coord: 7..147 score: 1.6
IPR023798	Ribosomal protein S7 domain	PFAM	PF00177	Ribosomal_S7	coord: 8..140 score: 2.3
IPR023798	Ribosomal protein S7 domain	unknown	SSF47973	Ribosomal protein S7	coord: 9..147 score: 1.7
None	No IPR available	PANTHER	PTHR11205:SF23	RIBOSOMAL PROTEIN S7, MITOCHONDRIAL	coord: 10..147 score: 1.9E