CmaCh00G001840.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G001840.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cytochrome c biogenesis FC
Location	Cma_Chr00 : 10824973 .. 10825384 (-)
Sequence length	285

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCCTTCTTCCTATGGTACTATAATTCCTATTCCTATTCCTATCTCTTTATTCCCTCTTTTGGTCTATCTACATTACAGGAAATTCATATGCTTTATGGACGGAGCAAAAAGTGGAGTCTTGGTCAGAGCAAGCCGCCCTATTCTATTACCAGACATAATTAGAAGAAGCTCATCCGAAACTTGAGCTAGAAATGCCTCATTTCGTTTCATTCCCGTTCTTCATTTCCTTCTTCTTTCATCCAAGGTAGACTTCTCATATTTTGAATCTTTCTGCAGTGTGCTCTGTTTACTATTCTTTCGTACTCTCTTCTCTTTACCACGCCATAGTTCAGCGAAGCGTGAGTGGGTGCGAAGAAGTAAAGGCTAAACACTCAGACCTAACGAGAATGAGCAACGACGCAATGAGAAGA

mRNA sequence

GCCCCTTCTTCCTATGGTACTATAATTCCTATTCCTATTCCTATCTCTTTATTCCCTCTTTTGGTCTATCTACATTACAGGAAATTCATATGCTTTATGGACGGAGCAAAAAGTGGAGTCTTGACTTCTCATATTTTGAATCTTTCTGCAGTGTGCTCTGTTTACTATTCTTTCGTACTCTCTTCTCTTTACCACGCCATAGTTCAGCGAAGCGTGAGTGGGTGCGAAGAAGTAAAGGCTAAACACTCAGACCTAACGAGAATGAGCAACGACGCAATGAGAAGA

Coding sequence (CDS)

GCCCCTTCTTCCTATGGTACTATAATTCCTATTCCTATTCCTATCTCTTTATTCCCTCTTTTGGTCTATCTACATTACAGGAAATTCATATGCTTTATGGACGGAGCAAAAAGTGGAGTCTTGACTTCTCATATTTTGAATCTTTCTGCAGTGTGCTCTGTTTACTATTCTTTCGTACTCTCTTCTCTTTACCACGCCATAGTTCAGCGAAGCGTGAGTGGGTGCGAAGAAGTAAAGGCTAAACACTCAGACCTAACGAGAATGAGCAACGACGCAATGAGAAGA

Protein sequence

APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVLSSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR

Homology

[Close]

BLAST of CmaCh00G001840.1 vs. TrEMBL
Match: A0A078FXW6_BRANA (BnaC01g27110D protein OS=Brassica napus GN=BnaC01g27110D PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-11
Identity = 53/95 (55.79%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           AP S GTIIP  IPIS FPLLVYLH RK I  MDGAKSGVL                   
Sbjct: 135 APFSNGTIIP--IPISSFPLLVYLHSRKIIRSMDGAKSGVL------------------- 194

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E KAKH   T MSND M R
Sbjct: 195 ----HAIGQRSVSGRGEGKAKHFGRTGMSNDEMTR 204

[Close]

BLAST of CmaCh00G001840.1 vs. TrEMBL
Match: F4IMD2_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At2g07815 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-11
Identity = 53/95 (55.79%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           AP S GTIIP  IPIS FPLLVYLH RK I  MDGAKSGVL                   
Sbjct: 210 APFSNGTIIP--IPISSFPLLVYLHSRKIIRSMDGAKSGVL------------------- 269

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E KAKH   T MSND M R
Sbjct: 270 ----HAIGQRSVSGRGEGKAKHFGRTGMSNDEMTR 279

[Close]

BLAST of CmaCh00G001840.1 vs. TrEMBL
Match: G3EU31_CUCME (Cytochrome c biogenesis FC OS=Cucumis melo subsp. melo GN=ccmFc PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 35/41 (85.37%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 1  APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVL 42
          APSS GTIIP  IPISLFPLLVYLH RKFI  MDGAKSGVL
Sbjct: 38 APSSNGTIIP--IPISLFPLLVYLHSRKFIRSMDGAKSGVL 76

[Close]

BLAST of CmaCh00G001840.1 vs. TrEMBL
Match: A0A0N9PWD1_POPTN (Cytochrome c maturase subunit Fc OS=Populus tremula GN=ccmFc PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 35/41 (85.37%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 1  APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVL 42
          APSS GTIIP  IPISLFPLLVYLH RKFI  MDGAKSGVL
Sbjct: 38 APSSNGTIIP--IPISLFPLLVYLHSRKFIRSMDGAKSGVL 76

[Close]

BLAST of CmaCh00G001840.1 vs. TrEMBL
Match: A0A0P0FHS7_POPCN (Cytochrome c biogenesis protein Fc OS=Populus canescens GN=ccmFc PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 35/41 (85.37%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 1  APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVL 42
          APSS GTIIP  IPISLFPLLVYLH RKFI  MDGAKSGVL
Sbjct: 38 APSSNGTIIP--IPISLFPLLVYLHSRKFIRSMDGAKSGVL 76

[Close]

BLAST of CmaCh00G001840.1 vs. TAIR10
Match: AT2G07815.1 (AT2G07815.1 BEST Arabidopsis thaliana protein match is: cytochrome C biogenesis 452 (TAIR:ATMG00180.1))

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-14
Identity = 53/95 (55.79%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           AP S GTIIP  IPIS FPLLVYLH RK I  MDGAKSGVL                   
Sbjct: 210 APFSNGTIIP--IPISSFPLLVYLHSRKIIRSMDGAKSGVL------------------- 269

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E KAKH   T MSND M R
Sbjct: 270 ----HAIGQRSVSGRGEGKAKHFGRTGMSNDEMTR 279

[Close]

BLAST of CmaCh00G001840.1 vs. TAIR10
Match: ATMG00180.1 (ATMG00180.1 cytochrome C biogenesis 452)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 32/41 (78.05%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 1  APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVL 42
          AP S GTIIP  IPIS FPLLVYLH RK I  MDGAKSGVL
Sbjct: 38 APFSNGTIIP--IPISSFPLLVYLHSRKIIRSMDGAKSGVL 76

[Close]

BLAST of CmaCh00G001840.1 vs. NCBI nr
Match: gi|1000936869|ref|XP_015584111.1| (PREDICTED: uncharacterized protein LOC107262518 [Ricinus communis])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 55/95 (57.89%), Postives = 55/95 (57.89%), Query Frame = 1


Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           APSS GTIIP  IPIS FPLLVYLH RKFI  MDGAKSGVL                   
Sbjct: 114 APSSNGTIIP--IPISSFPLLVYLHSRKFIRSMDGAKSGVL------------------- 173

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E  AKH  LT MSND M R
Sbjct: 174 ----HAIGQRSVSGRGEGNAKHFGLTGMSNDEMTR 183

[Close]

BLAST of CmaCh00G001840.1 vs. NCBI nr
Match: gi|645261945|ref|XP_008236537.1| (PREDICTED: LOW QUALITY PROTEIN: putative cytochrome c biogenesis ccmF-like mitochondrial protein [Prunus mume])

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 52/95 (54.74%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           APSS GTIIPIPIP   FP LVY+H RKFI  M GAKSGVL                   
Sbjct: 62  APSSNGTIIPIPIPA--FPFLVYIHSRKFIRSMGGAKSGVL------------------- 121

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E  AKH  LT MSND M R
Sbjct: 122 ----HAIGQRSVSGRGEGNAKHFGLTGMSNDEMTR 131

[Close]

BLAST of CmaCh00G001840.1 vs. NCBI nr
Match: gi|674887106|emb|CDY45515.1| (BnaCnng12740D [Brassica napus])

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-11
Identity = 53/95 (55.79%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           AP S GTIIP  IPIS FPLLVYLH RK I  MDGAKSGVL                   
Sbjct: 135 APFSNGTIIP--IPISSFPLLVYLHSRKIIRSMDGAKSGVL------------------- 194

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E KAKH   T MSND M R
Sbjct: 195 ----HAIGQRSVSGRGEGKAKHFGRTGMSNDEMTR 204

[Close]

BLAST of CmaCh00G001840.1 vs. NCBI nr
Match: gi|334184179|ref|NP_001118286.2| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-11
Identity = 53/95 (55.79%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           AP S GTIIP  IPIS FPLLVYLH RK I  MDGAKSGVL                   
Sbjct: 210 APFSNGTIIP--IPISSFPLLVYLHSRKIIRSMDGAKSGVL------------------- 269

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E KAKH   T MSND M R
Sbjct: 270 ----HAIGQRSVSGRGEGKAKHFGRTGMSNDEMTR 279

[Close]

BLAST of CmaCh00G001840.1 vs. NCBI nr
Match: gi|731324191|ref|XP_010672839.1| (PREDICTED: uncharacterized protein LOC104889344 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-10
Identity = 51/95 (53.68%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           AP S GT+IPI IP   F LLVYLH RKFI  MDG KSGVL                   
Sbjct: 626 APFSNGTLIPILIPS--FLLLVYLHSRKFIRSMDGVKSGVL------------------- 685

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI Q SVSG  E KAKH  LTRMSND M+R
Sbjct: 686 ----HAIGQPSVSGRREEKAKHFSLTRMSNDEMKR 695

The following BLAST results are available for this feature:

BLAST of CmaCh00G001840.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh00G001840.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A078FXW6_BRANA	3.9e-11	55.79	BnaC01g27110D protein OS=Brassica napus GN=BnaC01g27110D PE=4 SV=1	[more]
F4IMD2_ARATH	3.9e-11	55.79	Uncharacterized protein OS=Arabidopsis thaliana GN=At2g07815 PE=4 SV=1	[more]
G3EU31_CUCME	2.0e-07	85.37	Cytochrome c biogenesis FC OS=Cucumis melo subsp. melo GN=ccmFc PE=4 SV=1	[more]
A0A0N9PWD1_POPTN	2.0e-07	85.37	Cytochrome c maturase subunit Fc OS=Populus tremula GN=ccmFc PE=4 SV=1	[more]
A0A0P0FHS7_POPCN	2.0e-07	85.37	Cytochrome c biogenesis protein Fc OS=Populus canescens GN=ccmFc PE=4 SV=1	[more]

BLAST of CmaCh00G001840.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07815.1	2.0e-14	55.79	BEST Arabidopsis thaliana protein match is: cytochrome C biogenesis ...	[more]
ATMG00180.1	1.3e-08	78.05	ATMG00180.1 cytochrome C biogenesis 452	[more]

BLAST of CmaCh00G001840.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1000936869\|ref\|XP_015584111.1\|	1.8e-12	57.89	PREDICTED: uncharacterized protein LOC107262518 [Ricinus communis]	[more]
gi\|645261945\|ref\|XP_008236537.1\|	2.5e-11	54.74	PREDICTED: LOW QUALITY PROTEIN: putative cytochrome c biogenesis ccmF-like mitoc...	[more]
gi\|674887106\|emb\|CDY45515.1\|	5.7e-11	55.79	BnaCnng12740D [Brassica napus]	[more]
gi\|334184179\|ref\|NP_001118286.2\|	5.7e-11	55.79	uncharacterized protein [Arabidopsis thaliana]	[more]
gi\|731324191\|ref\|XP_010672839.1\|	2.1e-10	53.68	PREDICTED: uncharacterized protein LOC104889344 [Beta vulgaris subsp. vulgaris]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh00G001840	CmaCh00G001840	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001840.1	CmaCh00G001840.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001840.1.CDS.2	CmaCh00G001840.1.CDS.2	CDS
CmaCh00G001840.1.CDS.1	CmaCh00G001840.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001840.1.exon.2	CmaCh00G001840.1.exon.2	exon
CmaCh00G001840.1.exon.1	CmaCh00G001840.1.exon.1	exon