CmaCh00G001840 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCytochrome c biogenesis FC
LocationCma_Chr00 : 10824973 .. 10825384 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCCTTCTTCCTATGGTACTATAATTCCTATTCCTATTCCTATCTCTTTATTCCCTCTTTTGGTCTATCTACATTACAGGAAATTCATATGCTTTATGGACGGAGCAAAAAGTGGAGTCTTGGTCAGAGCAAGCCGCCCTATTCTATTACCAGACATAATTAGAAGAAGCTCATCCGAAACTTGAGCTAGAAATGCCTCATTTCGTTTCATTCCCGTTCTTCATTTCCTTCTTCTTTCATCCAAGGTAGACTTCTCATATTTTGAATCTTTCTGCAGTGTGCTCTGTTTACTATTCTTTCGTACTCTCTTCTCTTTACCACGCCATAGTTCAGCGAAGCGTGAGTGGGTGCGAAGAAGTAAAGGCTAAACACTCAGACCTAACGAGAATGAGCAACGACGCAATGAGAAGA

mRNA sequence

GCCCCTTCTTCCTATGGTACTATAATTCCTATTCCTATTCCTATCTCTTTATTCCCTCTTTTGGTCTATCTACATTACAGGAAATTCATATGCTTTATGGACGGAGCAAAAAGTGGAGTCTTGACTTCTCATATTTTGAATCTTTCTGCAGTGTGCTCTGTTTACTATTCTTTCGTACTCTCTTCTCTTTACCACGCCATAGTTCAGCGAAGCGTGAGTGGGTGCGAAGAAGTAAAGGCTAAACACTCAGACCTAACGAGAATGAGCAACGACGCAATGAGAAGA

Coding sequence (CDS)

GCCCCTTCTTCCTATGGTACTATAATTCCTATTCCTATTCCTATCTCTTTATTCCCTCTTTTGGTCTATCTACATTACAGGAAATTCATATGCTTTATGGACGGAGCAAAAAGTGGAGTCTTGACTTCTCATATTTTGAATCTTTCTGCAGTGTGCTCTGTTTACTATTCTTTCGTACTCTCTTCTCTTTACCACGCCATAGTTCAGCGAAGCGTGAGTGGGTGCGAAGAAGTAAAGGCTAAACACTCAGACCTAACGAGAATGAGCAACGACGCAATGAGAAGA

Protein sequence

APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVLSSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR
Homology
[Close]
BLAST of CmaCh00G001840 vs. TrEMBL
Match: A0A078FXW6_BRANA (BnaC01g27110D protein OS=Brassica napus GN=BnaC01g27110D PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-11
Identity = 53/95 (55.79%), Postives = 53/95 (55.79%), Query Frame = 1 

Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           AP S GTIIP  IPIS FPLLVYLH RK I  MDGAKSGVL                   
Sbjct: 135 APFSNGTIIP--IPISSFPLLVYLHSRKIIRSMDGAKSGVL------------------- 194

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E KAKH   T MSND M R
Sbjct: 195 ----HAIGQRSVSGRGEGKAKHFGRTGMSNDEMTR 204

[Close]
BLAST of CmaCh00G001840 vs. TrEMBL
Match: F4IMD2_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At2g07815 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-11
Identity = 53/95 (55.79%), Postives = 53/95 (55.79%), Query Frame = 1 

Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           AP S GTIIP  IPIS FPLLVYLH RK I  MDGAKSGVL                   
Sbjct: 210 APFSNGTIIP--IPISSFPLLVYLHSRKIIRSMDGAKSGVL------------------- 269

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E KAKH   T MSND M R
Sbjct: 270 ----HAIGQRSVSGRGEGKAKHFGRTGMSNDEMTR 279

[Close]
BLAST of CmaCh00G001840 vs. TrEMBL
Match: G3EU31_CUCME (Cytochrome c biogenesis FC OS=Cucumis melo subsp. melo GN=ccmFc PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 35/41 (85.37%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 1  APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVL 42
          APSS GTIIP  IPISLFPLLVYLH RKFI  MDGAKSGVL
Sbjct: 38 APSSNGTIIP--IPISLFPLLVYLHSRKFIRSMDGAKSGVL 76

[Close]
BLAST of CmaCh00G001840 vs. TrEMBL
Match: A0A0N9PWD1_POPTN (Cytochrome c maturase subunit Fc OS=Populus tremula GN=ccmFc PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 35/41 (85.37%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 1  APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVL 42
          APSS GTIIP  IPISLFPLLVYLH RKFI  MDGAKSGVL
Sbjct: 38 APSSNGTIIP--IPISLFPLLVYLHSRKFIRSMDGAKSGVL 76

[Close]
BLAST of CmaCh00G001840 vs. TrEMBL
Match: A0A0P0FHS7_POPCN (Cytochrome c biogenesis protein Fc OS=Populus canescens GN=ccmFc PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 35/41 (85.37%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 1  APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVL 42
          APSS GTIIP  IPISLFPLLVYLH RKFI  MDGAKSGVL
Sbjct: 38 APSSNGTIIP--IPISLFPLLVYLHSRKFIRSMDGAKSGVL 76

[Close]
BLAST of CmaCh00G001840 vs. TAIR10
Match: AT2G07815.1 (AT2G07815.1 BEST Arabidopsis thaliana protein match is: cytochrome C biogenesis 452 (TAIR:ATMG00180.1))

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-14
Identity = 53/95 (55.79%), Postives = 53/95 (55.79%), Query Frame = 1 

Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           AP S GTIIP  IPIS FPLLVYLH RK I  MDGAKSGVL                   
Sbjct: 210 APFSNGTIIP--IPISSFPLLVYLHSRKIIRSMDGAKSGVL------------------- 269

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E KAKH   T MSND M R
Sbjct: 270 ----HAIGQRSVSGRGEGKAKHFGRTGMSNDEMTR 279

[Close]
BLAST of CmaCh00G001840 vs. TAIR10
Match: ATMG00180.1 (ATMG00180.1 cytochrome C biogenesis 452)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 32/41 (78.05%), Postives = 32/41 (78.05%), Query Frame = 1 

Query: 1  APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVL 42
          AP S GTIIP  IPIS FPLLVYLH RK I  MDGAKSGVL
Sbjct: 38 APFSNGTIIP--IPISSFPLLVYLHSRKIIRSMDGAKSGVL 76

[Close]
BLAST of CmaCh00G001840 vs. NCBI nr
Match: gi|1000936869|ref|XP_015584111.1| (PREDICTED: uncharacterized protein LOC107262518 [Ricinus communis])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 55/95 (57.89%), Postives = 55/95 (57.89%), Query Frame = 1 

Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           APSS GTIIP  IPIS FPLLVYLH RKFI  MDGAKSGVL                   
Sbjct: 114 APSSNGTIIP--IPISSFPLLVYLHSRKFIRSMDGAKSGVL------------------- 173

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E  AKH  LT MSND M R
Sbjct: 174 ----HAIGQRSVSGRGEGNAKHFGLTGMSNDEMTR 183

[Close]
BLAST of CmaCh00G001840 vs. NCBI nr
Match: gi|645261945|ref|XP_008236537.1| (PREDICTED: LOW QUALITY PROTEIN: putative cytochrome c biogenesis ccmF-like mitochondrial protein [Prunus mume])

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 52/95 (54.74%), Postives = 53/95 (55.79%), Query Frame = 1 

Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           APSS GTIIPIPIP   FP LVY+H RKFI  M GAKSGVL                   
Sbjct: 62  APSSNGTIIPIPIPA--FPFLVYIHSRKFIRSMGGAKSGVL------------------- 121

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E  AKH  LT MSND M R
Sbjct: 122 ----HAIGQRSVSGRGEGNAKHFGLTGMSNDEMTR 131

[Close]
BLAST of CmaCh00G001840 vs. NCBI nr
Match: gi|674887106|emb|CDY45515.1| (BnaCnng12740D [Brassica napus])

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-11
Identity = 53/95 (55.79%), Postives = 53/95 (55.79%), Query Frame = 1 

Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           AP S GTIIP  IPIS FPLLVYLH RK I  MDGAKSGVL                   
Sbjct: 135 APFSNGTIIP--IPISSFPLLVYLHSRKIIRSMDGAKSGVL------------------- 194

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E KAKH   T MSND M R
Sbjct: 195 ----HAIGQRSVSGRGEGKAKHFGRTGMSNDEMTR 204

[Close]
BLAST of CmaCh00G001840 vs. NCBI nr
Match: gi|334184179|ref|NP_001118286.2| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-11
Identity = 53/95 (55.79%), Postives = 53/95 (55.79%), Query Frame = 1 

Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           AP S GTIIP  IPIS FPLLVYLH RK I  MDGAKSGVL                   
Sbjct: 210 APFSNGTIIP--IPISSFPLLVYLHSRKIIRSMDGAKSGVL------------------- 269

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI QRSVSG  E KAKH   T MSND M R
Sbjct: 270 ----HAIGQRSVSGRGEGKAKHFGRTGMSNDEMTR 279

[Close]
BLAST of CmaCh00G001840 vs. NCBI nr
Match: gi|731324191|ref|XP_010672839.1| (PREDICTED: uncharacterized protein LOC104889344 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-10
Identity = 51/95 (53.68%), Postives = 53/95 (55.79%), Query Frame = 1 

Query: 1   APSSYGTIIPIPIPISLFPLLVYLHYRKFICFMDGAKSGVLTSHILNLSAVCSVYYSFVL 60
           AP S GT+IPI IP   F LLVYLH RKFI  MDG KSGVL                   
Sbjct: 626 APFSNGTLIPILIPS--FLLLVYLHSRKFIRSMDGVKSGVL------------------- 685

Query: 61  SSLYHAIVQRSVSGCEEVKAKHSDLTRMSNDAMRR 96
               HAI Q SVSG  E KAKH  LTRMSND M+R
Sbjct: 686 ----HAIGQPSVSGRREEKAKHFSLTRMSNDEMKR 695

The following BLAST results are available for this feature:
BLAST of CmaCh00G001840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A078FXW6_BRANA3.9e-1155.79BnaC01g27110D protein OS=Brassica napus GN=BnaC01g27110D PE=4 SV=1[more]
F4IMD2_ARATH3.9e-1155.79Uncharacterized protein OS=Arabidopsis thaliana GN=At2g07815 PE=4 SV=1[more]
G3EU31_CUCME2.0e-0785.37Cytochrome c biogenesis FC OS=Cucumis melo subsp. melo GN=ccmFc PE=4 SV=1[more]
A0A0N9PWD1_POPTN2.0e-0785.37Cytochrome c maturase subunit Fc OS=Populus tremula GN=ccmFc PE=4 SV=1[more]
A0A0P0FHS7_POPCN2.0e-0785.37Cytochrome c biogenesis protein Fc OS=Populus canescens GN=ccmFc PE=4 SV=1[more]
BLAST of CmaCh00G001840 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07815.12.0e-1455.79 BEST Arabidopsis thaliana protein match is: cytochrome C biogenesis ... [more]
ATMG00180.11.3e-0878.05ATMG00180.1 cytochrome C biogenesis 452[more]
BLAST of CmaCh00G001840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1000936869|ref|XP_015584111.1|1.8e-1257.89PREDICTED: uncharacterized protein LOC107262518 [Ricinus communis][more]
gi|645261945|ref|XP_008236537.1|2.5e-1154.74PREDICTED: LOW QUALITY PROTEIN: putative cytochrome c biogenesis ccmF-like mitoc... [more]
gi|674887106|emb|CDY45515.1|5.7e-1155.79BnaCnng12740D [Brassica napus][more]
gi|334184179|ref|NP_001118286.2|5.7e-1155.79uncharacterized protein [Arabidopsis thaliana][more]
gi|731324191|ref|XP_010672839.1|2.1e-1053.68PREDICTED: uncharacterized protein LOC104889344 [Beta vulgaris subsp. vulgaris][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001840.1CmaCh00G001840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001840Cucurbita maxima (Rimu)cmacmaB003
CmaCh00G001840Cucurbita maxima (Rimu)cmacmaB018
CmaCh00G001840Cucurbita moschata (Rifu)cmacmoB001