CmaCh17G009870 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G009870
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	60S ribosomal protein L44
Location	Cma_Chr17 : 7254020 .. 7255027 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTCTTGAAGGCACTCCCATGCCAAAAACCTTCTCACGCTTCCATGGCCAAATCCCCAAATTCCAAATCTAACCCTCACCCTTTCCTCTGCTGCTTTGGATTTTCCGGCAAGCACCGTCGCTTTAAGCCTCTCAAACCTGCCGCCGCTCACCGGAAAGGTCCCATTTCTTGGATGAGATTTCACTCCAAGCAGCCGCCGCCGTCGCCGTCGGTTCAGTTCAACCTGTCTAATACGGATTCCGACCGGCTCTCCTCAAAATCTATTTCTCCGACCGCCGCTTTTAACTCGAATGAAGATTTTACCGTCGCGGTGCCGGTGGCGACAAATCGAGCCGGCGGGGAGATTGTCACGAGGCCAGAAAATGTATGTGAATTTGCTTGGAAATTTTTTTAATGTTGTCTAAAATTAAAATTTATTTAGAGTGACATTAAAATTTTAATTTTATTTTAGGTAAAAAATGACATCCTTCCAGAAAAAATTATTCGTGAAAATTGCGAGCAGTTGAACTCGCCAAAAAAACTTAGCGCTCGAAGTGAATCAAGATTCTCGTTTACTCGAAAACTCGAGTCGTTTCGATCAGGTCGGTTCGCTCAACCTGTCTCACCGACGACGAAAAAGAATCTAAAATCCACCAACCTGCAGTCACCCACAATATCACTCAACCTTCCTCGCATAAACCAGGTCAAGGAATCGATGGCGAGTATGCAGGTCAGGTTAAAGCCAAACAACAGCGAGATGAAGCAAAGGTACAGATCGATGGCGGGAATGTCAATTTTGATGATAACGTTGGTGATCATGATAGTGTGGGGAAGACTATGTGCCATTTTATGCACAGCAGCTTGGATTGTTATGGTTACGAGCTTAAGGTCAATCGTTGAAGATTATGATACACTTCAATTTTTTAAATCAGATTCATATTCGGAAGGGTTTAAGAAGAAATTAGTGGTTTTAAAAGGGTTTCTTTGCAGAAATCAAACTCAAAATCGGTCGAAGAAATTTTAG

mRNA sequence

ATGGTGGTCTTGAAGGCACTCCCATGCCAAAAACCTTCTCACGCTTCCATGGCCAAATCCCCAAATTCCAAATCTAACCCTCACCCTTTCCTCTGCTGCTTTGGATTTTCCGGCAAGCACCGTCGCTTTAAGCCTCTCAAACCTGCCGCCGCTCACCGGAAAGGTCCCATTTCTTGGATGAGATTTCACTCCAAGCAGCCGCCGCCGTCGCCGTCGGTTCAGTTCAACCTGTCTAATACGGATTCCGACCGGCTCTCCTCAAAATCTATTTCTCCGACCGCCGCTTTTAACTCGAATGAAGATTTTACCGTCGCGGTGCCGGTGGCGACAAATCGAGCCGGCGGGGAGATTGTCACGAGGCCAGAAAATGTAAAAAATGACATCCTTCCAGAAAAAATTATTCGTGAAAATTGCGAGCAGTTGAACTCGCCAAAAAAACTTAGCGCTCGAAGTGAATCAAGATTCTCGTTTACTCGAAAACTCGAGTCGTTTCGATCAGGTCGGTTCGCTCAACCTGTCTCACCGACGACGAAAAAGAATCTAAAATCCACCAACCTGCAGTCACCCACAATATCACTCAACCTTCCTCGCATAAACCAGGTCAAGGAATCGATGGCGAGTATGCAGGTCAGGTTAAAGCCAAACAACAGCGAGATGAAGCAAAGGTACAGATCGATGGCGGGAATGTCAATTTTGATGATAACGTTGGTGATCATGATAGTGTGGGGAAGACTATGTGCCATTTTATGCACAGCAGCTTGGATTGTTATGGTTACGAGCTTAAGGTCAATCGTTGAAGATTATGATACACTTCAATTTTTTAAATCAGATTCATATTCGGAAGGGTTTAAGAAGAAATTAGTGGTTTTAAAAGGGTTTCTTTGCAGAAATCAAACTCAAAATCGGTCGAAGAAATTTTAG

Coding sequence (CDS)

ATGGTGGTCTTGAAGGCACTCCCATGCCAAAAACCTTCTCACGCTTCCATGGCCAAATCCCCAAATTCCAAATCTAACCCTCACCCTTTCCTCTGCTGCTTTGGATTTTCCGGCAAGCACCGTCGCTTTAAGCCTCTCAAACCTGCCGCCGCTCACCGGAAAGGTCCCATTTCTTGGATGAGATTTCACTCCAAGCAGCCGCCGCCGTCGCCGTCGGTTCAGTTCAACCTGTCTAATACGGATTCCGACCGGCTCTCCTCAAAATCTATTTCTCCGACCGCCGCTTTTAACTCGAATGAAGATTTTACCGTCGCGGTGCCGGTGGCGACAAATCGAGCCGGCGGGGAGATTGTCACGAGGCCAGAAAATGTAAAAAATGACATCCTTCCAGAAAAAATTATTCGTGAAAATTGCGAGCAGTTGAACTCGCCAAAAAAACTTAGCGCTCGAAGTGAATCAAGATTCTCGTTTACTCGAAAACTCGAGTCGTTTCGATCAGGTCGGTTCGCTCAACCTGTCTCACCGACGACGAAAAAGAATCTAAAATCCACCAACCTGCAGTCACCCACAATATCACTCAACCTTCCTCGCATAAACCAGGTCAAGGAATCGATGGCGAGTATGCAGGTCAGGTTAAAGCCAAACAACAGCGAGATGAAGCAAAGGTACAGATCGATGGCGGGAATGTCAATTTTGATGATAACGTTGGTGATCATGATAGTGTGGGGAAGACTATGTGCCATTTTATGCACAGCAGCTTGGATTGTTATGGTTACGAGCTTAAGGTCAATCGTTGAAGATTATGATACACTTCAATTTTTTAAATCAGATTCATATTCGGAAGGGTTTAAGAAGAAATTAGTGGTTTTAAAAGGGTTTCTTTGCAGAAATCAAACTCAAAATCGGTCGAAGAAATTTTAG

Protein sequence

MVVLKALPCQKPSHASMAKSPNSKSNPHPFLCCFGFSGKHRRFKPLKPAAAHRKGPISWMRFHSKQPPPSPSVQFNLSNTDSDRLSSKSISPTAAFNSNEDFTVAVPVATNRAGGEIVTRPENVKNDILPEKIIRENCEQLNSPKKLSARSESRFSFTRKLESFRSGRFAQPVSPTTKKNLKSTNLQSPTISLNLPRINQVKESMASMQVRLKPNNSEMKQRYRSMAGMSILMITLVIMIVWGRLCAILCTAAWIVMVTSLRSIVEDYDTLQFFKSDSYSEGFKKKLVVLKGFLCRNQTQNRSKKF

Homology

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BLAST of CmaCh17G009870 vs. TrEMBL
Match: A0A0A0K6H3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420760 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 7.6e-72
Identity = 171/293 (58.36%), Postives = 204/293 (69.62%), Query Frame = 1


Query: 17  MAKSPNSKSNPHPFLCCFGFSGKHRRFKPLKPAAAHRKGPISWMRFHSKQPPPSPSVQF- 76
           MAKS NSKS PH FLCCFG+S K  RFKPLK  A HRK   SW R +SK P P  S  F 
Sbjct: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFR-NSKPPTPLHSSSFP 60

Query: 77  ---NLSNTDSDRLSSKSISPTAAFNS-NEDFTVAVPVATNRAGGEIVTRPENVKNDILPE 136
              N S T+SDRLSS SI+PTA  NS NED  +AVPVATNR G E++  P  VKND +  
Sbjct: 61  SHTNRSVTNSDRLSSVSIAPTATTNSSNED--LAVPVATNRTGEEVIISPHEVKNDTVAG 120

Query: 137 KIIRENCEQLNSPKKLSARSESRFSFTRKLESFRSGRFAQPVSPTTKKNLKSTNLQSPTI 196
           K I  + E  NSP K   +S+SRFS T++LESFRS RF Q   P  KKN KS N+Q+PTI
Sbjct: 121 KTIHGSSEHSNSPNKPIDQSQSRFSLTKRLESFRSIRFNQTAPP--KKNTKSINVQTPTI 180

Query: 197 SLNL----PR---INQVKESMASMQVRLKPNNSEMKQRYRSMAGMSILMITLVIMIVWGR 256
           S +L    P+    N+V E   S +V  K  N +  Q+YRS+A MS+LM+TL +M+VWGR
Sbjct: 181 SHSLSFPPPKPTPSNRVSELRESKRVCSKSKNRKSSQQYRSVAAMSVLMMTLAMMVVWGR 240

Query: 257 LCAILCTAAWIVMVTSLRSIVEDYDTLQFFKSDSYSEGFKKKLVVLKGFLCRN 298
           +CAILCTA WI +VTSLRSIVE+Y+ + F +SDSYSEGFKKKLVVLKGF+CRN
Sbjct: 241 ICAILCTATWIFIVTSLRSIVEEYEGIDFVESDSYSEGFKKKLVVLKGFVCRN 288

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BLAST of CmaCh17G009870 vs. TrEMBL
Match: W9RHP1_9ROSA (60S ribosomal protein L44 OS=Morus notabilis GN=L484_018099 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.8e-12
Identity = 97/327 (29.66%), Postives = 139/327 (42.51%), Query Frame = 1


Query: 10  QKPSHASMAKSPNSKSNPHPFLCCFGFSGK--------------------HRRFKPLKPA 69
           Q  +    +K   S S+   FLCCFGFSGK                    H  +   K  
Sbjct: 5   QNKTQHDRSKRKTSSSSSSSFLCCFGFSGKNFPEKQSEKDTIMISPSDHHHDGYDQKKAV 64

Query: 70  AAHRKGPISWMRFHSKQP----------------PP-------SPSVQFNLSNTDSDRLS 129
            + R     W R   K P                PP       SP  + + S +  +++ 
Sbjct: 65  TSVRFS--CWPRLRVKSPSGVKTVPVLDATVPEKPPKDGKINSSPKPK-SKSKSKPEKVP 124

Query: 130 SKSISPTAAFNSNEDFTVAVPVATNRAGGEIVTRPE----NVKNDILPEKIIRENCEQLN 189
           SK  +PT       +  + VPV ++   G     PE    + KN  L  +  + N    +
Sbjct: 125 SKRQAPTTNSQLPNEIEIVVPVVSDP--GPKQKPPEIKYGSAKNSNLDNR--KRNSSPSH 184

Query: 190 SPKKLSARSESRFSFTRKLESFRSGRFAQPVSPTTKKNLKSTNLQSPTISLNLPRINQVK 249
             K  +   + R SF+RK+E  R+G  +QP SP   K      ++        P  N+ K
Sbjct: 185 PSKDDTCYIQKRLSFSRKIEPTRAGS-SQPSSPVQAKPKPGRTIRHSNSFAAGP--NRDK 244

Query: 250 ESMASMQVRLKPNNSEMKQRYRSMAGMSILMITLVIMIVWGRLCAILCTAAWIVMVTSLR 289
             +A  Q +  P  S   +R+  + GMSI+++TLVIMIVWGRLCAILCT+AW+  V  L 
Sbjct: 245 SQVA--QTKPGPTESNFARRFEPVVGMSIVLVTLVIMIVWGRLCAILCTSAWLYFVPRLS 304

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BLAST of CmaCh17G009870 vs. TrEMBL
Match: B9SCQ1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1375760 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-11
Identity = 87/280 (31.07%), Postives = 132/280 (47.14%), Query Frame = 1


Query: 30  FLCCFGFSGKHRRFKPLKPAAAHRKGPISWMRFHSKQPPPSPSVQFNLSNTDSDRLSSK- 89
           FL CFGFS K       K    +RK   S   F  KQ   S +V  + SN   D+L +K 
Sbjct: 11  FLGCFGFSRKPS-VSGKKSQKNYRKHWFSRSTFLLKQSGGSRTVPVD-SNLSDDKLETKI 70

Query: 90  ----SISPTAAFNSNE-DFTVAVPVATNRAGGEI-VTRPENVKNDILPEKIIRENCEQLN 149
                 S     NSN        P A +       +   E+   +   + II EN ++L+
Sbjct: 71  SFMFKRSKLKKINSNNISLERENPAAQDTIPTSAPIVSVEDTPKETCDKNIIHENGKRLD 130

Query: 150 SPKKLSARSESRFSFTRKLESFRSGRFAQPVSPTTKKNL-----KSTNLQSPTISLNLPR 209
               +   S  +FS  RK+++ R+G  +QP SP  K        +ST+LQ+ TI    P 
Sbjct: 131 ----VVMESPKKFSLRRKIDTKRNGS-SQPGSPEEKSKPNRSIPQSTSLQAATIQHKQPE 190

Query: 210 INQVKESMASMQVRLKPNNSEMKQRYRSMAGMSILMITLVIMIVWGRLCAILCTAAWIVM 269
            ++V      +  + +  N  + + +  + GMSI+M+TL+IM++WGRLCAILCT AW+  
Sbjct: 191 KSRV------IAKKDRRKNEMIGKGFDPVIGMSIVMVTLIIMLLWGRLCAILCTCAWLYF 250

Query: 270 VTSLRSIVEDYDTLQFFKSDSYSEGFKKKLVVLKGFLCRN 298
              L++ +      +      +S    KK VVL+GFL R+
Sbjct: 251 TRRLKTDMSPRQIEKIRGEPDFSSDEYKKRVVLEGFLERD 277

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BLAST of CmaCh17G009870 vs. TrEMBL
Match: A0A061E2E5_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_007733 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-11
Identity = 84/280 (30.00%), Postives = 131/280 (46.79%), Query Frame = 1


Query: 30  FLCCFGFSGKHRRFKPLKPAAAHRKGPI-SWMRFHSKQPPPSPSVQFNLSNTDSDRLSSK 89
           F+ CFGFSGK +  K    A + ++  + SW  F S     S +    + NT+    +  
Sbjct: 18  FIGCFGFSGKEKPLKKTIHARSKKETRLLSWPMFRSSVRK-SRTKTVPVDNTEKAEGADG 77

Query: 90  SISPTAAFNSNEDFTVAVPVATNRAGGEIVTRPENVKNDILPEKIIRE-----NCEQLNS 149
           + S T+     +  T            ++ ++P+N   +  P     E     +C Q   
Sbjct: 78  NKSHTSKLIKRKSDT------------KLSSKPQNPVTNHTPSPQNSEAEQVASCNQAAR 137

Query: 150 PKKLSARSESRFSFTRKL-ESFRSGRFAQPVSPTTKKNLKSTNLQSPTISLNLPRINQVK 209
            K       +     RKL E  R+G  + P SP  K   K+    S T+SL +   N+  
Sbjct: 138 EKPKEGPEPNIILGNRKLSEPTRTGS-SPPGSPNVKPKSKTQTKLSHTVSLPVLEENKRV 197

Query: 210 ESMASMQVRLKPNNSEMKQRYRSMAGMSILMITLVIMIVWGRLCAILCTAAWIVMVTSLR 269
            +       ++  N+E+ ++   + GMSI+M+TL+IM++WGRLCAILCT+AW       R
Sbjct: 198 GNPRMHLREVQRKNNEVVEKIDPVLGMSIIMVTLIIMLLWGRLCAILCTSAWFYFCPRFR 257

Query: 270 SIVEDYDTLQFFKSDSY-----SEGFKKKLVVLKGFLCRN 298
           S + + DT     ++S      SE +KKK VVL+GFL RN
Sbjct: 258 STINNNDTAVRGTANSSDLDLDSEEYKKK-VVLEGFLQRN 282

[Close]

BLAST of CmaCh17G009870 vs. TrEMBL
Match: A0A061E266_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007733 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.7e-11
Identity = 85/283 (30.04%), Postives = 133/283 (47.00%), Query Frame = 1


Query: 30  FLCCFGFSGKHRRFKPLKPAAAHRKGPI-SWMRFHSKQPPPSPSVQFNLSNTDSDRLSSK 89
           F+ CFGFSGK +  K    A + ++  + SW  F S     S +    + NT+    +  
Sbjct: 18  FIGCFGFSGKEKPLKKTIHARSKKETRLLSWPMFRSSVRK-SRTKTVPVDNTEKAEGADG 77

Query: 90  SISPTAAFNSNEDFTVAVPVATNRAGGEIVTRPENVKNDILP-------EKIIRENCEQL 149
           + S T+     +  T            ++ ++P+N   +  P       E++   N    
Sbjct: 78  NKSHTSKLIKRKSDT------------KLSSKPQNPVTNHTPSPQNSEAEQVASCNQAAR 137

Query: 150 NSPKKLSARSESRFSF-TRKL-ESFRSGRFAQPVSPTTKKNLKSTNLQSPTISLNLPRIN 209
             PK+     E       RKL E  R+G  + P SP  K   K+    S T+SL +   N
Sbjct: 138 EKPKETRQGPEPNIILGNRKLSEPTRTGS-SPPGSPNVKPKSKTQTKLSHTVSLPVLEEN 197

Query: 210 QVKESMASMQVRLKPNNSEMKQRYRSMAGMSILMITLVIMIVWGRLCAILCTAAWIVMVT 269
           +   +       ++  N+E+ ++   + GMSI+M+TL+IM++WGRLCAILCT+AW     
Sbjct: 198 KRVGNPRMHLREVQRKNNEVVEKIDPVLGMSIIMVTLIIMLLWGRLCAILCTSAWFYFCP 257

Query: 270 SLRSIVEDYDTLQFFKSDSY-----SEGFKKKLVVLKGFLCRN 298
             RS + + DT     ++S      SE +KKK VVL+GFL RN
Sbjct: 258 RFRSTINNNDTAVRGTANSSDLDLDSEEYKKK-VVLEGFLQRN 285

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BLAST of CmaCh17G009870 vs. TAIR10
Match: AT5G08240.1 (AT5G08240.1 unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 9.0e-08
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 1


Query: 212 LKPNNSEMKQRYRS---MAGMSILMITLVIMIVWGRLCAILCTAAWIVMVTSLR---SIV 271
           LKP  S    R +    + G+SI+++TL+IM+VWGRLCAILCT+AW  ++  +R   ++ 
Sbjct: 162 LKPTRSRNGSRVKPFDPVIGISIIILTLMIMLVWGRLCAILCTSAWCYVLPRVRDAAALA 221

Query: 272 EDYDTLQFFKSDSYSEGFKKKLVVLKGFLCRNQTQNR 303
           +          D  SE +K+K VVL GFL R   QNR
Sbjct: 222 KRKRNGSASVPDLNSESYKRK-VVLDGFLGR---QNR 254

[Close]

BLAST of CmaCh17G009870 vs. TAIR10
Match: AT5G23160.1 (AT5G23160.1 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 4.9e-06
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 1


Query: 212 LKPNNSEMKQRYR-----SMAGMSILMITLVIMIVWGRLCAILCTAAWIVMVTSLRSIVE 271
           ++  +S +++R R      + G+SI+M+TL+IM+ WGRLCAILCT+ W  +   L+    
Sbjct: 163 IREKSSRVRKRSRVSKLDPVIGISIIMLTLMIMLTWGRLCAILCTSTWCYIFPRLKEAAT 222

Query: 272 DYDTLQFFKS--------------DSYSEGFKKKLVVLKGFLCR 297
               +   +S              D  S  +KKK VVL+GFL R
Sbjct: 223 AVAVVNRKRSGSGKGEEGSFQGDLDLNSVAYKKK-VVLEGFLVR 265

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BLAST of CmaCh17G009870 vs. NCBI nr
Match: gi|659122859|ref|XP_008461362.1| (PREDICTED: uncharacterized protein At5g23160 [Cucumis melo])

HSP 1 Score: 290.8 bits (743), Expect = 2.8e-75
Identity = 175/292 (59.93%), Postives = 202/292 (69.18%), Query Frame = 1


Query: 17  MAKSPNSKSNPHPFLCCFGFSGKHRRFKPLKPAAAHRKGPISWMRFHSKQPPPSPSV--- 76
           MAKS NSKS PH FL CFGFS K RRFKP K  A HRK P SW R +SK P P  S    
Sbjct: 1   MAKSSNSKSKPHFFLSCFGFSDKLRRFKPPKSPAGHRKRPFSWFR-NSKPPTPVHSSFPS 60

Query: 77  QFNLSNTDSDRLSSKSISPTAAF-NSNEDFTVAVPVATNRAGGEIVTRPENVKNDILPEK 136
             N S T+SDRLSS SI+PTA   +SNED  VAVPVAT R G E++  P  VKNDI+ EK
Sbjct: 61  HTNPSVTNSDRLSSVSIAPTATSKSSNEDLAVAVPVATKRTGQEVIIGPHEVKNDIVAEK 120

Query: 137 IIRENCEQLNSPKKLSARSESRFSFTRKLESFRSGRFAQPVSPTTKKNLKSTNLQSPTIS 196
            I E+CE  N P K   +S+SRFS T+KLESFR  RF Q  SP  KKN KSTNLQ PTIS
Sbjct: 121 TIHESCEHSNLPNKFIDQSQSRFSLTKKLESFRLVRFTQTASP--KKNPKSTNLQRPTIS 180

Query: 197 LNL----PR---INQVKESMASMQVRLKPNNSEMKQRYRSMAGMSILMITLVIMIVWGRL 256
            +L    P+   +N+V E   S Q      N +  QRYRS   MS+LM+TL +M++WGR+
Sbjct: 181 HSLSFPPPKPAPLNKVSEPSRSKQFGSMSANRKSSQRYRSAVAMSVLMMTLAMMVLWGRI 240

Query: 257 CAILCTAAWIVMVTSLRSIVEDYDTLQFFKSDSYSEGFKKKLVVLKGFLCRN 298
           CAILCTA WI +VTSLRSIVE+YD + F +SDSYSEGFKKKLVVLKGF+CRN
Sbjct: 241 CAILCTATWIFVVTSLRSIVEEYDRIDFVESDSYSEGFKKKLVVLKGFMCRN 289

[Close]

BLAST of CmaCh17G009870 vs. NCBI nr
Match: gi|778728461|ref|XP_011659425.1| (PREDICTED: uncharacterized protein LOC105436182 isoform X1 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 1.1e-71
Identity = 171/293 (58.36%), Postives = 204/293 (69.62%), Query Frame = 1


Query: 17  MAKSPNSKSNPHPFLCCFGFSGKHRRFKPLKPAAAHRKGPISWMRFHSKQPPPSPSVQF- 76
           MAKS NSKS PH FLCCFG+S K  RFKPLK  A HRK   SW R +SK P P  S  F 
Sbjct: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFR-NSKPPTPLHSSSFP 60

Query: 77  ---NLSNTDSDRLSSKSISPTAAFNS-NEDFTVAVPVATNRAGGEIVTRPENVKNDILPE 136
              N S T+SDRLSS SI+PTA  NS NED  +AVPVATNR G E++  P  VKND +  
Sbjct: 61  SHTNRSVTNSDRLSSVSIAPTATTNSSNED--LAVPVATNRTGEEVIISPHEVKNDTVAG 120

Query: 137 KIIRENCEQLNSPKKLSARSESRFSFTRKLESFRSGRFAQPVSPTTKKNLKSTNLQSPTI 196
           K I  + E  NSP K   +S+SRFS T++LESFRS RF Q   P  KKN KS N+Q+PTI
Sbjct: 121 KTIHGSSEHSNSPNKPIDQSQSRFSLTKRLESFRSIRFNQTAPP--KKNTKSINVQTPTI 180

Query: 197 SLNL----PR---INQVKESMASMQVRLKPNNSEMKQRYRSMAGMSILMITLVIMIVWGR 256
           S +L    P+    N+V E   S +V  K  N +  Q+YRS+A MS+LM+TL +M+VWGR
Sbjct: 181 SHSLSFPPPKPTPSNRVSELRESKRVCSKSKNRKSSQQYRSVAAMSVLMMTLAMMVVWGR 240

Query: 257 LCAILCTAAWIVMVTSLRSIVEDYDTLQFFKSDSYSEGFKKKLVVLKGFLCRN 298
           +CAILCTA WI +VTSLRSIVE+Y+ + F +SDSYSEGFKKKLVVLKGF+CRN
Sbjct: 241 ICAILCTATWIFIVTSLRSIVEEYEGIDFVESDSYSEGFKKKLVVLKGFVCRN 288

[Close]

BLAST of CmaCh17G009870 vs. NCBI nr
Match: gi|778728464|ref|XP_011659426.1| (PREDICTED: uncharacterized protein LOC105436182 isoform X2 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 68/114 (59.65%), Postives = 75/114 (65.79%), Query Frame = 1


Query: 17  MAKSPNSKSNPHPFLCCFGFSGKHRRFKPLKPAAAHRKGPISWMRFHSKQPPPSPSVQF- 76
           MAKS NSKS PH FLCCFG+S K  RFKPLK  A HRK   SW R +SK P P  S  F 
Sbjct: 1   MAKSSNSKSKPHFFLCCFGYSDKLPRFKPLKSPAGHRKRQFSWFR-NSKPPTPLHSSSFP 60

Query: 77  ---NLSNTDSDRLSSKSISPTAAFN-SNEDFTVAVPVATNRAGGEIVTRPENVK 126
              N S T+SDRLSS SI+PTA  N SNED  +AVPVATNR G E++  P   K
Sbjct: 61  SHTNRSVTNSDRLSSVSIAPTATTNSSNED--LAVPVATNRTGEEVIISPHEEK 111

[Close]

BLAST of CmaCh17G009870 vs. NCBI nr
Match: gi|703090440|ref|XP_010094082.1| (60S ribosomal protein L44 [Morus notabilis])

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 97/327 (29.66%), Postives = 139/327 (42.51%), Query Frame = 1


Query: 10  QKPSHASMAKSPNSKSNPHPFLCCFGFSGK--------------------HRRFKPLKPA 69
           Q  +    +K   S S+   FLCCFGFSGK                    H  +   K  
Sbjct: 5   QNKTQHDRSKRKTSSSSSSSFLCCFGFSGKNFPEKQSEKDTIMISPSDHHHDGYDQKKAV 64

Query: 70  AAHRKGPISWMRFHSKQP----------------PP-------SPSVQFNLSNTDSDRLS 129
            + R     W R   K P                PP       SP  + + S +  +++ 
Sbjct: 65  TSVRFS--CWPRLRVKSPSGVKTVPVLDATVPEKPPKDGKINSSPKPK-SKSKSKPEKVP 124

Query: 130 SKSISPTAAFNSNEDFTVAVPVATNRAGGEIVTRPE----NVKNDILPEKIIRENCEQLN 189
           SK  +PT       +  + VPV ++   G     PE    + KN  L  +  + N    +
Sbjct: 125 SKRQAPTTNSQLPNEIEIVVPVVSDP--GPKQKPPEIKYGSAKNSNLDNR--KRNSSPSH 184

Query: 190 SPKKLSARSESRFSFTRKLESFRSGRFAQPVSPTTKKNLKSTNLQSPTISLNLPRINQVK 249
             K  +   + R SF+RK+E  R+G  +QP SP   K      ++        P  N+ K
Sbjct: 185 PSKDDTCYIQKRLSFSRKIEPTRAGS-SQPSSPVQAKPKPGRTIRHSNSFAAGP--NRDK 244

Query: 250 ESMASMQVRLKPNNSEMKQRYRSMAGMSILMITLVIMIVWGRLCAILCTAAWIVMVTSLR 289
             +A  Q +  P  S   +R+  + GMSI+++TLVIMIVWGRLCAILCT+AW+  V  L 
Sbjct: 245 SQVA--QTKPGPTESNFARRFEPVVGMSIVLVTLVIMIVWGRLCAILCTSAWLYFVPRLS 304

[Close]

BLAST of CmaCh17G009870 vs. NCBI nr
Match: gi|255565560|ref|XP_002523770.1| (PREDICTED: uncharacterized protein At5g23160 isoform X2 [Ricinus communis])

HSP 1 Score: 77.8 bits (190), Expect = 3.7e-11
Identity = 87/280 (31.07%), Postives = 132/280 (47.14%), Query Frame = 1


Query: 30  FLCCFGFSGKHRRFKPLKPAAAHRKGPISWMRFHSKQPPPSPSVQFNLSNTDSDRLSSK- 89
           FL CFGFS K       K    +RK   S   F  KQ   S +V  + SN   D+L +K 
Sbjct: 11  FLGCFGFSRKPS-VSGKKSQKNYRKHWFSRSTFLLKQSGGSRTVPVD-SNLSDDKLETKI 70

Query: 90  ----SISPTAAFNSNE-DFTVAVPVATNRAGGEI-VTRPENVKNDILPEKIIRENCEQLN 149
                 S     NSN        P A +       +   E+   +   + II EN ++L+
Sbjct: 71  SFMFKRSKLKKINSNNISLERENPAAQDTIPTSAPIVSVEDTPKETCDKNIIHENGKRLD 130

Query: 150 SPKKLSARSESRFSFTRKLESFRSGRFAQPVSPTTKKNL-----KSTNLQSPTISLNLPR 209
               +   S  +FS  RK+++ R+G  +QP SP  K        +ST+LQ+ TI    P 
Sbjct: 131 ----VVMESPKKFSLRRKIDTKRNGS-SQPGSPEEKSKPNRSIPQSTSLQAATIQHKQPE 190

Query: 210 INQVKESMASMQVRLKPNNSEMKQRYRSMAGMSILMITLVIMIVWGRLCAILCTAAWIVM 269
            ++V      +  + +  N  + + +  + GMSI+M+TL+IM++WGRLCAILCT AW+  
Sbjct: 191 KSRV------IAKKDRRKNEMIGKGFDPVIGMSIVMVTLIIMLLWGRLCAILCTCAWLYF 250

Query: 270 VTSLRSIVEDYDTLQFFKSDSYSEGFKKKLVVLKGFLCRN 298
              L++ +      +      +S    KK VVL+GFL R+
Sbjct: 251 TRRLKTDMSPRQIEKIRGEPDFSSDEYKKRVVLEGFLERD 277

The following BLAST results are available for this feature:

BLAST of CmaCh17G009870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G009870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6H3_CUCSA	7.6e-72	58.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420760 PE=4 SV=1	[more]
W9RHP1_9ROSA	8.8e-12	29.66	60S ribosomal protein L44 OS=Morus notabilis GN=L484_018099 PE=3 SV=1	[more]
B9SCQ1_RICCO	2.6e-11	31.07	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1375760 PE=4 SV=1	[more]
A0A061E2E5_THECC	3.3e-11	30.00	Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_007733 PE=4 SV=1	[more]
A0A061E266_THECC	5.7e-11	30.04	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007733 PE=4 SV=1	[more]

BLAST of CmaCh17G009870 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08240.1	9.0e-08	42.27	unknown protein	[more]
AT5G23160.1	4.9e-06	34.62	unknown protein	[more]

BLAST of CmaCh17G009870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122859\|ref\|XP_008461362.1\|	2.8e-75	59.93	PREDICTED: uncharacterized protein At5g23160 [Cucumis melo]	[more]
gi\|778728461\|ref\|XP_011659425.1\|	1.1e-71	58.36	PREDICTED: uncharacterized protein LOC105436182 isoform X1 [Cucumis sativus]	[more]
gi\|778728464\|ref\|XP_011659426.1\|	1.9e-20	59.65	PREDICTED: uncharacterized protein LOC105436182 isoform X2 [Cucumis sativus]	[more]
gi\|703090440\|ref\|XP_010094082.1\|	1.3e-11	29.66	60S ribosomal protein L44 [Morus notabilis]	[more]
gi\|255565560\|ref\|XP_002523770.1\|	3.7e-11	31.07	PREDICTED: uncharacterized protein At5g23160 isoform X2 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G009870.1	CmaCh17G009870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34379	FAMILY NOT NAMED	coord: 10..306 score: 8.7
None	No IPR available	PANTHER	PTHR34379:SF1	SUBFAMILY NOT NAMED	coord: 10..306 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G009870	Cucsa.128280	Cucumber (Gy14) v1	cgycmaB0346
CmaCh17G009870	Cla015201	Watermelon (97103) v1	cmawmB328
CmaCh17G009870	Csa7G420760	Cucumber (Chinese Long) v2	cmacuB388
CmaCh17G009870	MELO3C023593	Melon (DHL92) v3.5.1	cmameB326
CmaCh17G009870	ClCG09G004510	Watermelon (Charleston Gray)	cmawcgB306
CmaCh17G009870	CSPI07G18800	Wild cucumber (PI 183967)	cmacpiB392
CmaCh17G009870	CmoCh17G009570	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G009870	Lsi02G025330	Bottle gourd (USVL1VR-Ls)	cmalsiB348
CmaCh17G009870	Cp4.1LG12g06380	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G009870	MELO3C023593.2	Melon (DHL92) v3.6.1	cmamedB379
CmaCh17G009870	CsaV3_7G030630	Cucumber (Chinese Long) v3	cmacucB0462
CmaCh17G009870	Cla97C09G166860	Watermelon (97103) v2	cmawmbB386
CmaCh17G009870	Bhi09G000603	Wax gourd	cmawgoB0487
CmaCh17G009870	CsGy7G017230	Cucumber (Gy14) v2	cgybcmaB925
CmaCh17G009870	Carg07078	Silver-seed gourd	carcmaB0142

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G009870	Cucumber (Chinese Long) v3	cmacucB0432
CmaCh17G009870	Watermelon (97103) v2	cmawmbB360
CmaCh17G009870	Wax gourd	cmawgoB0454
CmaCh17G009870	Cucurbita maxima (Rimu)	cmacmaB250
CmaCh17G009870	Cucurbita maxima (Rimu)	cmacmaB360
CmaCh17G009870	Cucurbita maxima (Rimu)	cmacmaB382
CmaCh17G009870	Cucurbita moschata (Rifu)	cmacmoB351
CmaCh17G009870	Cucurbita moschata (Rifu)	cmacmoB354
CmaCh17G009870	Cucurbita moschata (Rifu)	cmacmoB374
CmaCh17G009870	Wild cucumber (PI 183967)	cmacpiB365
CmaCh17G009870	Cucumber (Chinese Long) v2	cmacuB361
CmaCh17G009870	Melon (DHL92) v3.5.1	cmameB333
CmaCh17G009870	Watermelon (Charleston Gray)	cmawcgB314
CmaCh17G009870	Watermelon (97103) v1	cmawmB336
CmaCh17G009870	Cucurbita pepo (Zucchini)	cmacpeB399
CmaCh17G009870	Cucurbita pepo (Zucchini)	cmacpeB376
CmaCh17G009870	Cucurbita pepo (Zucchini)	cmacpeB404
CmaCh17G009870	Bottle gourd (USVL1VR-Ls)	cmalsiB351
CmaCh17G009870	Cucumber (Gy14) v2	cgybcmaB350
CmaCh17G009870	Melon (DHL92) v3.6.1	cmamedB387
CmaCh17G009870	Silver-seed gourd	carcmaB0625
CmaCh17G009870	Silver-seed gourd	carcmaB1058
CmaCh17G009870	Silver-seed gourd	carcmaB1133