CmaCh16G003110 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGCCTTCCCGGATTAGCGGCAAACAAACATAACCTTCTCTGTTTGTCGGTAATCTCAAACTCTGTCTTCGGATTATATATACAAATCTTTCAGATCCCAATCTTCTTCTCTGTACTTCGCAGACCTTCGCTGGCGTCTCCATTGACTCCTCCATCTATCTTCAGTTTTTCCTTCTTTTTTTTTGTTTTTGTTTTTGTGAATTCCGGCCGGATTCGTCGACGTTGTTCGGCGGTCGGGATTGATTGTGTTGAGAGGGAGATATCTTGTTGATTTGAAGAGGAAGTAGAAGAGATGAGTTATTATAATCAAGGCCAGGCTCCGGTTGGAGTGCCTCCGCCTCAAGGTATTTTGCTGTTTTTTGTTATGATTTTGGTGTTTTTACTGTTGGATCGGAGGATTGTGGTGTGCGATTGTAGATCTGTGTATGTTTTGTGTTGATTAAGAGTATTGATGGTTGTTTTAGGTTATCCGCCGGAAGGTTATCCGAAGGATGCTTATCCGCCGCCGGGATATCCGCCGCAGGGATATCCTCCCCCGGGATATCCGCCGCAGGGCTATCCTCCTCCCGGTGCTTATCCGCCGCAGGGATATCCTCCGCCTTACGCTCCTCAGTACGGTCAGCCTCCTCCTCCTCAACAGCAAAGTAGCAGCTCTGGTTGCTTGCAAGGCTGGTAAGTCGCTCTCTCTTGATTTCTCCATTTTTACCTGTTCAAGGCGGTTGAAATCGGATCTGAATCATTCCGATGATATGGTATCGGAAACTGAATTGAGAACGAGCCAATTGCATCGTCTGGTAATGCGTTCAGCCTCGGTTTCATCGCCCTAATGAAATCCCCAAATTGACCCCCCGTTAGCCTCTATATTGCAGTCTTTTTTAATATTTATTTTATTTTAATCTGGGAAGCTTAAGAAATTATAATGTTTATCATTTTAATTATTGCAAACGGCACAAACCATACTGTATAAGATCATTGCAATTAATCCAAAATTTTAAAATGCAATGGTATTAGTGTTAGAAATATATTATTTATGGAATATATCTTAGATATTATATCTTAATATACATTTTCAATTCTATTTTCTATCTCATTCTTAATATGGTATCAGAGCACCCATCTTAGTATTCCTAATATCAGAGTACCAATATTGATATTCTTAATATCAGAGCACTGATCATGGTATTCCTAATACCCTCTTGGACTCAAAGTCCAAGGGGAGTATTAAACCTAAAGCCAAATCCTAACTCAATCAGTGAAGCCTTTAAAGTTGCCAATCATCCAGTATCATGTAAGCATCTTCAAATTCTCACCAAGCTCAAAGGTGACATATTCAAGATGTTCGTATTTTCATTCACAACCTCTCAAGTGATCCAAAGCACTGATCTTGGTGTTATTATCCAGTAAAGCATTTATGCATGGACTAAGAAGTGATCAGGGAGGATATTCACTTGTTCCAAATCAAATTAAATGGGACAAGCAACTAATCCTCGAGTCAATCATTGCGGTCTATTTTTTACGGATATTTTCTTTACTGGGAAGACAAAAGTGTTATTGACCTACACTCTCTTCTCAAAGACAACTCGGGTGTTATTGACCTACACTCGTAAAGACAAGTTGAAAACAAGTATAATGTGATTGACATACACTCCTCCAACTTGAGGGGGAGTGTTGAGATATATTATTTATGGAATATATCTAAGGGTTTCCAGATCAATGTTGAGCTCTCTGCCCTCTCAATTTAGGAAAACTTATAAAACTTATAAATTATCCTAAAGAATTTAGTTTTAATTGTAAAATTGGTTGGTTTTCGAGGTGGATCTTAATTGATGAATCAAATTGTCGAACTAACATTCTGGAGTAATTTGTTCTTCTATGTATTGACCATCATCATTAGTTTAAATCTAATCTTTTGTCATTTATTTTAAAACATTCAAATTCTTTCAAATTTGTTTAGAATTTTGTTAGATTAAGACTTCACGTAGCTATCTACGATGGTGTTTTAAGTCCCAATTTTCGTTACAAGTAGCTATCACACTATTCCAAATTTCAATTTTGTTAGTTGCAAGTCATCGATATGGACTACTATTATCTTCAGTAATACGAGATTTCATGTTTAAAGTGAATAATATCATGTGTTTGCGAAGATATAATGTTATAAATTTGGGATGAGTTTGATACTAAAATTGAGTATGATATGAACTGTGTGTGCAGTTTGGCTGCGCTGTGCTGTTGCTGCCTGCTCGACGCCTGCTTCTGAAGAGACCCCATGTGCAGTGTGTGGAGGGCGGGCTTCAAATTCAAGAACTATCTCTCTCTCTCTCTCTCACAGTAAAGCTTTTCCCTAAGAGAAAAAAGATTGAAACTGGGCGTTCATTTTGTGAAGTTTTTAATTTGTTGCGTTTATTGATTATAATAGTCTAGTGCTTGTTCCTCCCTCGTTCCCTCCATTTTTCTTATATAAATAACACCCTTATCTCTCTCTAGT AGCCTTCCCGGATTAGCGGCAAACAAACATAACCTTCTCTGTTTGTCGGTAATCTCAAACTCTGTCTTCGGATTATATATACAAATCTTTCAGATCCCAATCTTCTTCTCTGTACTTCGCAGACCTTCGCTGGCGTCTCCATTGACTCCTCCATCTATCTTCAGTTTTTCCTTCTTTTTTTTTGTTTTTGTTTTTGTGAATTCCGGCCGGATTCGTCGACGTTGTTCGGCGGTCGGGATTGATTGTGTTGAGAGGGAGATATCTTGTTGATTTGAAGAGGAAGTAGAAGAGATGAGTTATTATAATCAAGGCCAGGCTCCGGTTGGAGTGCCTCCGCCTCAAGGTTATCCGCCGGAAGGTTATCCGAAGGATGCTTATCCGCCGCCGGGATATCCGCCGCAGGGATATCCTCCCCCGGGATATCCGCCGCAGGGCTATCCTCCTCCCGGTGCTTATCCGCCGCAGGGATATCCTCCGCCTTACGCTCCTCAGTACGGTCAGCCTCCTCCTCCTCAACAGCAAAGTAGCAGCTCTGGTTGCTTGCAAGGCTGTTTGGCTGCGCTGTGCTGTTGCTGCCTGCTCGACGCCTGCTTCTGAAGAGACCCCATGTGCAGTGTGTGGAGGGCGGGCTTCAAATTCAAGAACTATCTCTCTCTCTCTCTCTCACAGTAAAGCTTTTCCCTAAGAGAAAAAAGATTGAAACTGGGCGTTCATTTTGTGAAGTTTTTAATTTGTTGCGTTTATTGATTATAATAGTCTAGTGCTTGTTCCTCCCTCGTTCCCTCCATTTTTCTTATATAAATAACACCCTTATCTCTCTCTAGT ATGAGTTATTATAATCAAGGCCAGGCTCCGGTTGGAGTGCCTCCGCCTCAAGGTTATCCGCCGGAAGGTTATCCGAAGGATGCTTATCCGCCGCCGGGATATCCGCCGCAGGGATATCCTCCCCCGGGATATCCGCCGCAGGGCTATCCTCCTCCCGGTGCTTATCCGCCGCAGGGATATCCTCCGCCTTACGCTCCTCAGTACGGTCAGCCTCCTCCTCCTCAACAGCAAAGTAGCAGCTCTGGTTGCTTGCAAGGCTGTTTGGCTGCGCTGTGCTGTTGCTGCCTGCTCGACGCCTGCTTCTGA MSYYNQGQAPVGVPPPQGYPPEGYPKDAYPPPGYPPQGYPPPGYPPQGYPPPGAYPPQGYPPPYAPQYGQPPPPQQQSSSSGCLQGCLAALCCCCLLDACF
BLAST of CmaCh16G003110 vs. Swiss-Prot
Match: CYT1A_ARATH (Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 2.5e-33 Identity = 82/101 (81.19%), Postives = 83/101 (82.18%), Query Frame = 1
BLAST of CmaCh16G003110 vs. Swiss-Prot
Match: CYT1B_ARATH (Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thaliana GN=At3g57160 PE=3 SV=2) HSP 1 Score: 96.7 bits (239), Expect = 1.6e-19 Identity = 67/101 (66.34%), Postives = 71/101 (70.30%), Query Frame = 1
BLAST of CmaCh16G003110 vs. Swiss-Prot
Match: CYTM1_DANRE (Cysteine-rich and transmembrane domain-containing protein 1 OS=Danio rerio GN=cystm1 PE=3 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 2.3e-10 Identity = 56/114 (49.12%), Postives = 57/114 (50.00%), Query Frame = 1
BLAST of CmaCh16G003110 vs. Swiss-Prot
Match: OPSD_ENTDO (Rhodopsin OS=Enteroctopus dofleini GN=RHO PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 1.5e-09 Identity = 42/55 (76.36%), Postives = 44/55 (80.00%), Query Frame = 1
BLAST of CmaCh16G003110 vs. Swiss-Prot
Match: OPSD_ALLSU (Rhodopsin (Fragment) OS=Alloteuthis subulata GN=RHO PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.8e-08 Identity = 40/56 (71.43%), Postives = 41/56 (73.21%), Query Frame = 1
BLAST of CmaCh16G003110 vs. TrEMBL
Match: A0A0A0KWC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000680 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 5.8e-37 Identity = 83/101 (82.18%), Postives = 85/101 (84.16%), Query Frame = 1
BLAST of CmaCh16G003110 vs. TrEMBL
Match: I1JAY1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G242200 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 3.2e-35 Identity = 83/106 (78.30%), Postives = 86/106 (81.13%), Query Frame = 1
BLAST of CmaCh16G003110 vs. TrEMBL
Match: V7CGF5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G051400g PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 2.1e-34 Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 1
BLAST of CmaCh16G003110 vs. TrEMBL
Match: U5G3V1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09010g PE=4 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 3.5e-34 Identity = 85/101 (84.16%), Postives = 87/101 (86.14%), Query Frame = 1
BLAST of CmaCh16G003110 vs. TrEMBL
Match: A0A022RH20_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021603mg PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 4.6e-34 Identity = 84/103 (81.55%), Postives = 86/103 (83.50%), Query Frame = 1
BLAST of CmaCh16G003110 vs. TAIR10
Match: AT2G41420.1 (AT2G41420.1 proline-rich family protein) HSP 1 Score: 142.5 bits (358), Expect = 1.4e-34 Identity = 82/101 (81.19%), Postives = 83/101 (82.18%), Query Frame = 1
BLAST of CmaCh16G003110 vs. TAIR10
Match: AT5G67600.1 (AT5G67600.1 unknown protein) HSP 1 Score: 98.2 bits (243), Expect = 3.1e-21 Identity = 64/98 (65.31%), Postives = 68/98 (69.39%), Query Frame = 1
BLAST of CmaCh16G003110 vs. TAIR10
Match: AT3G49845.1 (AT3G49845.1 unknown protein) HSP 1 Score: 89.0 bits (219), Expect = 1.9e-18 Identity = 65/122 (53.28%), Postives = 70/122 (57.38%), Query Frame = 1
BLAST of CmaCh16G003110 vs. TAIR10
Match: AT5G45350.1 (AT5G45350.1 proline-rich family protein) HSP 1 Score: 54.3 bits (129), Expect = 5.1e-08 Identity = 47/98 (47.96%), Postives = 52/98 (53.06%), Query Frame = 1
BLAST of CmaCh16G003110 vs. TAIR10
Match: AT1G31750.1 (AT1G31750.1 proline-rich family protein) HSP 1 Score: 53.5 bits (127), Expect = 8.6e-08 Identity = 40/59 (67.80%), Postives = 42/59 (71.19%), Query Frame = 1
BLAST of CmaCh16G003110 vs. NCBI nr
Match: gi|778689152|ref|XP_011652909.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis sativus]) HSP 1 Score: 161.4 bits (407), Expect = 8.3e-37 Identity = 83/101 (82.18%), Postives = 85/101 (84.16%), Query Frame = 1
BLAST of CmaCh16G003110 vs. NCBI nr
Match: gi|659108830|ref|XP_008454408.1| (PREDICTED: CYSTM1 family protein A-like [Cucumis melo]) HSP 1 Score: 160.2 bits (404), Expect = 1.9e-36 Identity = 84/101 (83.17%), Postives = 86/101 (85.15%), Query Frame = 1
BLAST of CmaCh16G003110 vs. NCBI nr
Match: gi|694401186|ref|XP_009375656.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Pyrus x bretschneideri]) HSP 1 Score: 157.9 bits (398), Expect = 9.2e-36 Identity = 84/101 (83.17%), Postives = 86/101 (85.15%), Query Frame = 1
BLAST of CmaCh16G003110 vs. NCBI nr
Match: gi|571436869|ref|XP_006573901.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Glycine max]) HSP 1 Score: 155.6 bits (392), Expect = 4.6e-35 Identity = 83/106 (78.30%), Postives = 86/106 (81.13%), Query Frame = 1
BLAST of CmaCh16G003110 vs. NCBI nr
Match: gi|657954637|ref|XP_008368761.1| (PREDICTED: CYSTM1 family protein A [Malus domestica]) HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34 Identity = 83/101 (82.18%), Postives = 85/101 (84.16%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |