CmaCh12G006490 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAACATTCCACTACGACCACCCTCTTCTTCATTCTTCTCATCTTCCACCTCGCCGGACCCGCCATGGCCTCCGACGACCACCGTCTCGTCGAGGTGGTGCCTCCAGTAAGCCTCCTCTGTATCAGCGAATGCTCAACTTGTCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACCCTCAAATCTCCTCCACCGGTGCCTCACTCCCCTCCGATGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCGACCCCATCACCACCGCCGCCTCCAGTACCGCCGGTGGCTTCATCTCATTCCCCACCGCCTCCCGCTTTCAAATACTATTTCAGCTTGCCACCACCGCCTCCGGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTTCTACGCTTCGAATTCATGTTCTCTGAATTCTCCGGCGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGTGTCTTGGTGGTGGTGAAGTGAAGCTTGATTTTCATGGTGTTTTGTATGGGAAGTAG ATGGAACATTCCACTACGACCACCCTCTTCTTCATTCTTCTCATCTTCCACCTCGCCGGACCCGCCATGGCCTCCGACGACCACCGTCTCGTCGAGGTGGTGCCTCCAGTAAGCCTCCTCTGTATCAGCGAATGCTCAACTTGTCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACCCTCAAATCTCCTCCACCGGTGCCTCACTCCCCTCCGATGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCGACCCCATCACCACCGCCGCCTCCAGTACCGCCGGTGGCTTCATCTCATTCCCCACCGCCTCCCGCTTTCAAATACTATTTCAGCTTGCCACCACCGCCTCCGGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTTCTACGCTTCGAATTCATGTTCTCTGAATTCTCCGGCGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGTGTCTTGGTGGTGGTGAAGTGAAGCTTGATTTTCATGGTGTTTTGTATGGGAAGTAG ATGGAACATTCCACTACGACCACCCTCTTCTTCATTCTTCTCATCTTCCACCTCGCCGGACCCGCCATGGCCTCCGACGACCACCGTCTCGTCGAGGTGGTGCCTCCAGTAAGCCTCCTCTGTATCAGCGAATGCTCAACTTGTCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACCCTCAAATCTCCTCCACCGGTGCCTCACTCCCCTCCGATGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCGACCCCATCACCACCGCCGCCTCCAGTACCGCCGGTGGCTTCATCTCATTCCCCACCGCCTCCCGCTTTCAAATACTATTTCAGCTTGCCACCACCGCCTCCGGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTTCTACGCTTCGAATTCATGTTCTCTGAATTCTCCGGCGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGTGTCTTGGTGGTGGTGAAGTGAAGCTTGATTTTCATGGTGTTTTGTATGGGAAGTAG MEHSTTTTLFFILLIFHLAGPAMASDDHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPPVASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVCLGGGEVKLDFHGVLYGK
BLAST of CmaCh12G006490 vs. TrEMBL
Match: A0A0A0KD44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363610 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 1.0e-42 Identity = 123/187 (65.78%), Postives = 135/187 (72.19%), Query Frame = 1
BLAST of CmaCh12G006490 vs. TrEMBL
Match: A0A078DPE5_BRANA (BnaC02g04170D protein OS=Brassica napus GN=BnaC02g04170D PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 7.1e-12 Identity = 71/174 (40.80%), Postives = 94/174 (54.02%), Query Frame = 1
BLAST of CmaCh12G006490 vs. TrEMBL
Match: A0A0D3AIP4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 7.1e-12 Identity = 71/174 (40.80%), Postives = 94/174 (54.02%), Query Frame = 1
BLAST of CmaCh12G006490 vs. TrEMBL
Match: A0A0D3B0Q7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11 Identity = 81/184 (44.02%), Postives = 98/184 (53.26%), Query Frame = 1
BLAST of CmaCh12G006490 vs. TrEMBL
Match: A0A078JJY3_BRANA (BnaAnng25240D protein OS=Brassica napus GN=BnaAnng25240D PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 6.0e-11 Identity = 72/175 (41.14%), Postives = 96/175 (54.86%), Query Frame = 1
BLAST of CmaCh12G006490 vs. TAIR10
Match: AT5G11990.1 (AT5G11990.1 proline-rich family protein) HSP 1 Score: 56.2 bits (134), Expect = 2.5e-08 Identity = 64/172 (37.21%), Postives = 86/172 (50.00%), Query Frame = 1
BLAST of CmaCh12G006490 vs. NCBI nr
Match: gi|778715318|ref|XP_011657382.1| (PREDICTED: extensin-like [Cucumis sativus]) HSP 1 Score: 181.4 bits (459), Expect = 1.4e-42 Identity = 123/187 (65.78%), Postives = 135/187 (72.19%), Query Frame = 1
BLAST of CmaCh12G006490 vs. NCBI nr
Match: gi|659089438|ref|XP_008445508.1| (PREDICTED: classical arabinogalactan protein 9-like [Cucumis melo]) HSP 1 Score: 177.2 bits (448), Expect = 2.7e-41 Identity = 115/166 (69.28%), Postives = 125/166 (75.30%), Query Frame = 1
BLAST of CmaCh12G006490 vs. NCBI nr
Match: gi|645227496|ref|XP_008220545.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Prunus mume]) HSP 1 Score: 84.0 bits (206), Expect = 3.1e-13 Identity = 72/149 (48.32%), Postives = 88/149 (59.06%), Query Frame = 1
BLAST of CmaCh12G006490 vs. NCBI nr
Match: gi|674942430|emb|CDX91180.1| (BnaC02g04170D [Brassica napus]) HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11 Identity = 71/174 (40.80%), Postives = 94/174 (54.02%), Query Frame = 1
BLAST of CmaCh12G006490 vs. NCBI nr
Match: gi|922426245|ref|XP_013619193.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Brassica oleracea var. oleracea]) HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11 Identity = 71/174 (40.80%), Postives = 94/174 (54.02%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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