CmaCh08G003360 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G003360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 5
Location	Cma_Chr08 : 1931021 .. 1931941 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGGAACAGATCTAGAGCTTTAATGGCGGATCAAGCTTCACCAGTTTCAAATTCTCTGTTTGGTTCTCCAAGATTCAAACCTTTTACACCAACAACACAATCAATTGATCACTCTGTGATTAGTCCCACTTCTGTTCTTGATTCCAAACCATTTTTTTCTCTTCAAAATCCCTTCTCTTATGATCCCAACACAAAACCCAATTCCCCCAAGAAACCAATTTTCCCAGTAAACAAACACAAAATCTCTGGCAGAAACCCAATTGGGCTTGCTTTAATTGAGGAGAAATACGATTCCACGCTCAGTAAAAGTGTAATTTTTAGAGCGAAACTTCGTGTCAAAATCCCTCCTCCTCTGCTGCCGGATTCCGCCGTAGACGACGGCGGTGGAGATTTGTTTCCTTCTGGGATTGGTGATGGGGGGATGATGACGGTGAAGGAGATGGAGGTTTGTGAAGAGTATACTTGTGTGAGAACTCATGGACCTGATGCTAAAATTACTCATATTTTTGATAACTTTGTGGTGAAAAGCTCTGTAGATTCTGGACCTGAGAGAATTTCCATGGCGGATTTGAAGAACAAGAACAAGAAGAACAAGAAGAACAAGAAGAATGATTTTCTTAGCTTCTGCTACACCTGCAACAGAAATCTTGAGCTCACAAAGGACATCTATATTTACAGGTGCGCCCATTTTTTTTCTGGTTCATTGTTGGTCTGGAAGAGTACTAATTTTGGTCCATTGTTGTGTTCATTGCAGAGGTGAGAAAGCTTTTTGCAGCCATGAATGTCGCTACCAAGAAATGCTTTTGGATGAAGAACAACAACAACAATCATCTTGATTCTTCCATCATCATCTTCAACCTCTGGTTTTCTGGTTCTTCTTCCAATAAATTTTCACATAAAATTCATAGGATCTTTT

mRNA sequence

ATGTTGAGGAACAGATCTAGAGCTTTAATGGCGGATCAAGCTTCACCAGTTTCAAATTCTCTGTTTGGTTCTCCAAGATTCAAACCTTTTACACCAACAACACAATCAATTGATCACTCTGTGATTAGTCCCACTTCTGTTCTTGATTCCAAACCATTTTTTTCTCTTCAAAATCCCTTCTCTTATGATCCCAACACAAAACCCAATTCCCCCAAGAAACCAATTTTCCCAGTAAACAAACACAAAATCTCTGGCAGAAACCCAATTGGGCTTGCTTTAATTGAGGAGAAATACGATTCCACGCTCAGTAAAAGTGTAATTTTTAGAGCGAAACTTCGTGTCAAAATCCCTCCTCCTCTGCTGCCGGATTCCGCCGTAGACGACGGCGGTGGAGATTTGTTTCCTTCTGGGATTGGTGATGGGGGGATGATGACGGTGAAGGAGATGGAGGTTTGTGAAGAGTATACTTGTGTGAGAACTCATGGACCTGATGCTAAAATTACTCATATTTTTGATAACTTTGTGGTGAAAAGCTCTGTAGATTCTGGACCTGAGAGAATTTCCATGGCGGATTTGAAGAACAAGAACAAGAAGAACAAGAAGAACAAGAAGAATGATTTTCTTAGCTTCTGCTACACCTGCAACAGAAATCTTGAGCTCACAAAGGACATCTATATTTACAGAGGTGAGAAAGCTTTTTGCAGCCATGAATGTCGCTACCAAGAAATGCTTTTGGATGAAGAACAACAACAACAATCATCTTGATTCTTCCATCATCATCTTCAACCTCTGGTTTTCTGGTTCTTCTTCCAATAAATTTTCACATAAAATTCATAGGATCTTTT

Coding sequence (CDS)

ATGTTGAGGAACAGATCTAGAGCTTTAATGGCGGATCAAGCTTCACCAGTTTCAAATTCTCTGTTTGGTTCTCCAAGATTCAAACCTTTTACACCAACAACACAATCAATTGATCACTCTGTGATTAGTCCCACTTCTGTTCTTGATTCCAAACCATTTTTTTCTCTTCAAAATCCCTTCTCTTATGATCCCAACACAAAACCCAATTCCCCCAAGAAACCAATTTTCCCAGTAAACAAACACAAAATCTCTGGCAGAAACCCAATTGGGCTTGCTTTAATTGAGGAGAAATACGATTCCACGCTCAGTAAAAGTGTAATTTTTAGAGCGAAACTTCGTGTCAAAATCCCTCCTCCTCTGCTGCCGGATTCCGCCGTAGACGACGGCGGTGGAGATTTGTTTCCTTCTGGGATTGGTGATGGGGGGATGATGACGGTGAAGGAGATGGAGGTTTGTGAAGAGTATACTTGTGTGAGAACTCATGGACCTGATGCTAAAATTACTCATATTTTTGATAACTTTGTGGTGAAAAGCTCTGTAGATTCTGGACCTGAGAGAATTTCCATGGCGGATTTGAAGAACAAGAACAAGAAGAACAAGAAGAACAAGAAGAATGATTTTCTTAGCTTCTGCTACACCTGCAACAGAAATCTTGAGCTCACAAAGGACATCTATATTTACAGAGGTGAGAAAGCTTTTTGCAGCCATGAATGTCGCTACCAAGAAATGCTTTTGGATGAAGAACAACAACAACAATCATCTTGA

Protein sequence

MLRNRSRALMADQASPVSNSLFGSPRFKPFTPTTQSIDHSVISPTSVLDSKPFFSLQNPFSYDPNTKPNSPKKPIFPVNKHKISGRNPIGLALIEEKYDSTLSKSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFPSGIGDGGMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLKNKNKKNKKNKKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEEQQQQSS

Homology

[Close]

BLAST of CmaCh08G003360 vs. Swiss-Prot
Match: MARD1_ARATH (Protein MARD1 OS=Arabidopsis thaliana GN=MARD1 PE=2 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 7.0e-32
Identity = 110/282 (39.01%), Postives = 149/282 (52.84%), Query Frame = 1


Query: 1   MLRNRSRA----------LMADQASP-------VSNSLFGSPRFKPFTP----TTQSIDH 60
           MLRN+ RA          LMADQ  P        S SLF SP+F+ FT     T    D 
Sbjct: 1   MLRNKPRAAVTTKKQTSLLMADQPPPPKPNTCHCSPSLFSSPKFRFFTSKMMMTPFDSDF 60

Query: 61  SVISPTSVLDSKP-FFSLQNPFSYDPNTKPNSPKKPIFPVNKHKISGRNPIGLALIEEKY 120
           S++SPTS+L++ P  FS +NP       KP S  +P  P N  +    +  GLA + +  
Sbjct: 61  SLVSPTSILEANPSIFSSKNP-------KPVSYFEPTIP-NPQRFHSPDVFGLADLVKDG 120

Query: 121 DST-------LSKSVIFRAKLRVKIPPPLLPDSAVDDGG--GDLFP----SGIGDGGMMT 180
           DS        ++K V+F +KLRV+IP      S+ D G   G  +P    S      ++ 
Sbjct: 121 DSNRDHSRKPVNKMVLFGSKLRVQIP------SSADFGTKTGIRYPPCQLSPCVQTKVLA 180

Query: 181 VKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLKNKNKKNKKNKKN 240
           V E++  E+YT V +HGP+  ITHIFDN V    V++ P  + +     + K  +     
Sbjct: 181 VSEIDQTEDYTRVISHGPNPTITHIFDNSVF---VEATPCSVPLPQPAMETKSTES---- 240

Query: 241 DFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDE 248
            FLS C+TC +NL+  +DIYIYRGEK FCS ECRYQEMLLD+
Sbjct: 241 -FLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQ 260

[Close]

BLAST of CmaCh08G003360 vs. TrEMBL
Match: A0A0A0K8U5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G388300 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.6e-65
Identity = 161/279 (57.71%), Postives = 184/279 (65.95%), Query Frame = 1


Query: 1   MLRNRSRALMADQA----------------SPVSNSLFGSPRFKPFTPTTQSID--HSVI 60
           MLRNRSRA+   QA                 P+ NSLFGSP++K F+PT + ID  +SVI
Sbjct: 1   MLRNRSRAVSGKQALMAENQVSRFSSYSYTKPLENSLFGSPKYKAFSPTKRGIDDHNSVI 60

Query: 61  SPTSVLDS--KPFFSLQNPFSYDPNTKPNSPKKPIFPVNKHKISG-RNPIGLALIEEKYD 120
           SPTSVLDS  KPFFSLQNPF   PN K  +    + P     ISG + PIGLALIE+K D
Sbjct: 61  SPTSVLDSNNKPFFSLQNPFIKLPNPKIIAKTTRVSP---EIISGPKKPIGLALIEDKND 120

Query: 121 -STLSKSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFPSGIGDGGMMTVKEMEVCEEYTCV 180
            S  +KSVIF AKLRV+IPPP    SAVD GG         +G +MTVKEMEVCEEYTCV
Sbjct: 121 DSKPTKSVIFGAKLRVQIPPP---GSAVDGGGNHN-----NNGSLMTVKEMEVCEEYTCV 180

Query: 181 RTHGPDAKITHIFDNFVVKSSVDS----GPER-ISMADLKNKNKKNKKNKKNDFLSFCYT 240
           + HGP+AKITHIFDNFVVK+ VD     G  R  S AD + K KK   N  N FL FCYT
Sbjct: 181 KRHGPNAKITHIFDNFVVKTMVDDYYHYGSSRNFSTADWRKKKKKMNNNNNNSFLRFCYT 240

Query: 241 CNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEEQQQQ 253
              +L+LT DIYIYRGEKAFCSHECR QEMLLDEE + +
Sbjct: 241 WKNDLQLTNDIYIYRGEKAFCSHECRNQEMLLDEEDEDE 268

[Close]

BLAST of CmaCh08G003360 vs. TrEMBL
Match: M5VXH5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008958mg PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.8e-40
Identity = 133/302 (44.04%), Postives = 158/302 (52.32%), Query Frame = 1


Query: 1   MLRNRSRA------LMAD---QASPVSN------SLFGSPRFKPFTPTTQSIDHSVISPT 60
           MLRNRSRA      LMAD   Q+SP         S FGSPRF+ FT    S   S+ISPT
Sbjct: 19  MLRNRSRAVTSKQALMADHTSQSSPTQKNYTKAPSFFGSPRFRAFTIKGHSETDSLISPT 78

Query: 61  SVLDSKPFFSLQNPFSYDPNTKPNSPKKPIFPVNKHKISGRNP----IGLALIE----EK 120
           S+LDSKPF     PFSYD N +P +PK     V+ +K S   P    IGLAL+E    EK
Sbjct: 79  SILDSKPF-PFATPFSYDQN-QPKTPKV----VSANKSSWHQPEPKGIGLALLETLNDEK 138

Query: 121 YDSTLSK----SVIFRAKLRVKIPPPLLPDSAVDDGGGDLFP------------SGIGDG 180
            +   SK     V+F  KLRV+IP  L P SA+        P            S IG  
Sbjct: 139 LEDNASKPNSGKVLFGTKLRVQIP--LFPASALSPTQSPKSPADFKIKIRNSQSSAIGSA 198

Query: 181 ----------------GMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPE 240
                           G  +V EME+ E+YTCV + GP+ + THIFDN +V+S       
Sbjct: 199 ISGIQTEHSNSAQAPTGCASVSEMELSEDYTCVISRGPNPRTTHIFDNCIVESFY----- 258

Query: 241 RISMADLKNKNKKNKKNKKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLL 248
             S++D          +    FLSFCYTC +NLE   DIYIYRGEKAFCS ECRYQEMLL
Sbjct: 259 --SLSD-------QSSSASVSFLSFCYTCKKNLEQKNDIYIYRGEKAFCSRECRYQEMLL 298

[Close]

BLAST of CmaCh08G003360 vs. TrEMBL
Match: A0A061DXK3_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_004326 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.1e-39
Identity = 127/305 (41.64%), Postives = 160/305 (52.46%), Query Frame = 1


Query: 1   MLRNRSRA------LMAD---QASPVSN------SLFGSPRFKPFTPTTQSIDHSVISPT 60
           MLRNRSRA      LMAD   Q++P  N      S FGSPRFK FT        +V SPT
Sbjct: 1   MLRNRSRAVTSKQALMADHSSQSTPAQNYTRPIPSFFGSPRFKAFTTKGLPDTEAVKSPT 60

Query: 61  SVLDSKPFFSLQNPFSYDPNTKPNSPKKPIFPVNKH-----KISGRNPIGLALIEEKYDS 120
           S+LD+KP F   +PF +D N +P SP+    P NK      K+  +  IGLA+++   D+
Sbjct: 61  SILDNKPLFPFGSPFGFDIN-QPKSPRV-FSPNNKQQHLPEKLDSKG-IGLAIVDTLNDT 120

Query: 121 ---------TLSKSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFPSGIGDG---------- 180
                    T +K V+F AKLRV+IPP  LP S        + P+  G            
Sbjct: 121 PIEDKSSSETSNKMVLFGAKLRVQIPP--LPSSLRSPTTSPISPTYFGIKNRNSHLSSPF 180

Query: 181 -----------------GMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGP 240
                            G + V+EME+ E+YTCV +HGP+ K THIFDN VV+S      
Sbjct: 181 GSPDSDIHVKDSPRVFTGCLPVREMELSEDYTCVISHGPNPKTTHIFDNCVVES------ 240

Query: 241 ERISMADLKNKNKKNKKNKKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEML 250
                  L +K     K+    FLSFC+TC +NLE   DIY+YRGEKAFCS ECRYQEML
Sbjct: 241 ----YCTLPDK----PKSAPESFLSFCHTCKKNLEQKIDIYMYRGEKAFCSQECRYQEML 286

[Close]

BLAST of CmaCh08G003360 vs. TrEMBL
Match: A0A0D2QSB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G138400 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.5e-38
Identity = 125/301 (41.53%), Postives = 155/301 (51.50%), Query Frame = 1


Query: 1   MLRNRSRA------LMAD---QASPVSN------SLFGSPRFKPFTPTTQSIDHSVISPT 60
           MLRNR RA      LMAD   QASP  N      S F SPRFK FT        S+ SPT
Sbjct: 1   MLRNRPRAVTSKQTLMADHSSQASPAQNCTKPNPSFFDSPRFKAFTSKAFPDTESLKSPT 60

Query: 61  SVLDSKPFFSLQNPFSYDPNTKPNSPKKPIFPVNKHKI-SGRNPIGLALI---------- 120
           S+LD+KPFF   NPF+ D N  P SPK P  P N H       P G+AL           
Sbjct: 61  SILDNKPFFPFGNPFALDRN-HPKSPK-PFSPNNTHPSPENSEPKGIALAIVDTFLNKNQ 120

Query: 121 -EEKY--DSTLSKSVIFRAKLRVKIPPPLLP----------DSAVDDGGGDLFPSGIGDG 180
            E K   +++  K V+F  +LRV+IPP L P          D  +      L P+     
Sbjct: 121 TENKSCCEASNKKKVLFGTELRVQIPPVLPPSLVSPTTSPTDFGIKTRNSHLTPAFASPN 180

Query: 181 -------------GMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERIS 240
                        G + V+EME+ E+YTCV +HGP+ + THIFDN VV++          
Sbjct: 181 YGIHMKDSPRVFNGCLPVREMELSEDYTCVISHGPNPRTTHIFDNCVVENYCSV------ 240

Query: 241 MADLKNKNKKNKKNKKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEE 250
              L NK K   ++    FLSFC+TC +NL+   DIYIYRGEKAFCS ECR+QEMLLD +
Sbjct: 241 ---LDNKPKPAPES----FLSFCHTCKKNLQQKIDIYIYRGEKAFCSQECRHQEMLLDGD 286

[Close]

BLAST of CmaCh08G003360 vs. TrEMBL
Match: W9QKS7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002440 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.5e-38
Identity = 126/306 (41.18%), Postives = 159/306 (51.96%), Query Frame = 1


Query: 1   MLRNRSRA------LMADQASPVSN-----------SLFGSPRFKPFTPTTQSIDHSVIS 60
           MLRNRSRA      LMAD +S  S+           S F SPRFK FT    S +  ++S
Sbjct: 1   MLRNRSRAVTSKQALMADHSSQPSHTQNYNNKRTPISFFVSPRFKAFTKKGFSENDDLVS 60

Query: 61  PTSVLDSKPFFSLQNPFSYDPNTKPNSPKKPIFPVNKH---KISGRNP-IGLALIE---- 120
           PTSVLD+K FFSL +PFS+   TK  +    +FP NK    K  G    IGL LI+    
Sbjct: 61  PTSVLDTKTFFSLTSPFSH---TKKQAMSPKVFPGNKRPWDKSPGSTKGIGLVLIDPFDD 120

Query: 121 -------EKYDSTLSKSVIFRAKLRVKIPP-----------PLLP--------DSAVDDG 180
                  +K+    ++ V+   KLRV+IP            P  P        +S +   
Sbjct: 121 QKNNINGKKFSKPCNRKVVLGNKLRVQIPTLSSDQYDHDQSPKSPAEFGIKTRNSHISAC 180

Query: 181 GG--------DLFPSGIGDGGMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVD 240
           G         D+ P  I   G ++V ++E  E+YTCV +HGP  + THIFDN +V+S   
Sbjct: 181 GSANSCGQTKDISPRSIT--GWISVSDVEHSEDYTCVISHGPVPRTTHIFDNCIVESYCC 240

Query: 241 SGPERISMADLKNKNKKNKKNKKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQ 248
              +    +   NK K   KN    FLSFC+TCN+NLE   DIYIYRGEKAFCS ECRYQ
Sbjct: 241 LSDDHDHNSVYINKPKSCSKN----FLSFCHTCNKNLEQKIDIYIYRGEKAFCSRECRYQ 297

[Close]

BLAST of CmaCh08G003360 vs. TAIR10
Match: AT3G63210.1 (AT3G63210.1 Protein of unknown function (DUF581))

HSP 1 Score: 139.0 bits (349), Expect = 3.9e-33
Identity = 110/282 (39.01%), Postives = 149/282 (52.84%), Query Frame = 1


Query: 1   MLRNRSRA----------LMADQASP-------VSNSLFGSPRFKPFTP----TTQSIDH 60
           MLRN+ RA          LMADQ  P        S SLF SP+F+ FT     T    D 
Sbjct: 1   MLRNKPRAAVTTKKQTSLLMADQPPPPKPNTCHCSPSLFSSPKFRFFTSKMMMTPFDSDF 60

Query: 61  SVISPTSVLDSKP-FFSLQNPFSYDPNTKPNSPKKPIFPVNKHKISGRNPIGLALIEEKY 120
           S++SPTS+L++ P  FS +NP       KP S  +P  P N  +    +  GLA + +  
Sbjct: 61  SLVSPTSILEANPSIFSSKNP-------KPVSYFEPTIP-NPQRFHSPDVFGLADLVKDG 120

Query: 121 DST-------LSKSVIFRAKLRVKIPPPLLPDSAVDDGG--GDLFP----SGIGDGGMMT 180
           DS        ++K V+F +KLRV+IP      S+ D G   G  +P    S      ++ 
Sbjct: 121 DSNRDHSRKPVNKMVLFGSKLRVQIP------SSADFGTKTGIRYPPCQLSPCVQTKVLA 180

Query: 181 VKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLKNKNKKNKKNKKN 240
           V E++  E+YT V +HGP+  ITHIFDN V    V++ P  + +     + K  +     
Sbjct: 181 VSEIDQTEDYTRVISHGPNPTITHIFDNSVF---VEATPCSVPLPQPAMETKSTES---- 240

Query: 241 DFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDE 248
            FLS C+TC +NL+  +DIYIYRGEK FCS ECRYQEMLLD+
Sbjct: 241 -FLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQ 260

[Close]

BLAST of CmaCh08G003360 vs. TAIR10
Match: AT3G22550.1 (AT3G22550.1 Protein of unknown function (DUF581))

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-25
Identity = 90/279 (32.26%), Postives = 138/279 (49.46%), Query Frame = 1


Query: 1   MLRNRSR---ALMAD----------QASPVSNSLFGSPRFKPFTPTTQSIDHSVISPTSV 60
           ML+ RSR   ALMA+          + +P          FK FT      + +V SPTS+
Sbjct: 1   MLKKRSRSKQALMAETNQSQNQKQSKTTPFPRLFTAFSSFKSFTE-----NDAVASPTSI 60

Query: 61  LDSKPFFSLQNPFSYDPNTKPNSPKKPIFPVNKHKISGRNPIGLALIEEKYDSTL----- 120
           LD+KPF  L+NPF  D N K   P+  +      K+  +  IGLA+++            
Sbjct: 61  LDTKPFSVLKNPFGSD-NPKTQEPETRL------KLEPKR-IGLAIVDSLIQDETPEPGP 120

Query: 121 -SKSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFP--------SGIGD----GGMMTVKEM 180
            S +++F ++LR+++P   +  S       +  P        SG+G      G     +M
Sbjct: 121 RSGTILFGSQLRIRVPDSPISSSDFGIKTRNSQPETKKPGSESGLGSPRIISGYFPASDM 180

Query: 181 EVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLKNKNKKNKKNKKNDFLS 240
           E+ E+YTCV  HGP+ +  HIFDN +V+S    G      +D  N++  +  +  + FLS
Sbjct: 181 ELSEDYTCVTCHGPNPRTIHIFDNCIVESQ--PGVVFFRSSDPVNESDSDY-SPPDSFLS 240

Query: 241 FCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEE 249
            C  C ++L    DI++YRG++AFCS ECR  EM++ EE
Sbjct: 241 CCCNCKKSLGPRDDIFMYRGDRAFCSSECRSIEMMMSEE 263

[Close]

BLAST of CmaCh08G003360 vs. TAIR10
Match: AT5G11460.1 (AT5G11460.1 Protein of unknown function (DUF581))

HSP 1 Score: 89.4 bits (220), Expect = 3.6e-18
Identity = 49/123 (39.84%), Postives = 70/123 (56.91%), Query Frame = 1


Query: 145 TVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLKNKNKKNKKNK- 204
           T  +ME+ E+YTCV +HGP+ K TH + + V++S        +   +LKN+  KN+K   
Sbjct: 200 TESDMEISEDYTCVISHGPNPKTTHFYGDQVMES--------VEREELKNRCCKNEKESI 259

Query: 205 ----------------KNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDE 251
                             DFLSFCY C++ L + +DIY+Y G KAFCS ECR +E+ LDE
Sbjct: 260 FAVAPLDLTTPVDVLPPKDFLSFCYGCSKKLGMGEDIYMYSGYKAFCSSECRSKEIDLDE 314

[Close]

BLAST of CmaCh08G003360 vs. TAIR10
Match: AT2G25690.1 (AT2G25690.1 Protein of unknown function (DUF581))

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-13
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 1


Query: 134 FPSGIGDGGMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLK 193
           FP    D    +  +ME   +YTC+  HGP+ K THI+ + V++   +         D  
Sbjct: 202 FPGSGSDNAFSSEDDME---DYTCIIAHGPNPKTTHIYGDRVLECHKNE-----LKGDED 261

Query: 194 NKNKKNKKNKKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEEQQQQ 253
           NK K       ++FL  C  CN+ L    DIY+YR EK+FCS ECR +EM++DEE  ++
Sbjct: 262 NKEKFGSVFPSDNFLGICNFCNKKLGGGDDIYMYR-EKSFCSEECRSEEMMIDEEDLEE 311

[Close]

BLAST of CmaCh08G003360 vs. TAIR10
Match: AT5G49120.1 (AT5G49120.1 Protein of unknown function (DUF581))

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 1


Query: 207 FLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEEQ 250
           FL  C+ C R L   KDIY+Y+G++AFCS ECR ++M++DEE+
Sbjct: 68  FLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDEEE 110

[Close]

BLAST of CmaCh08G003360 vs. NCBI nr
Match: gi|449458484|ref|XP_004146977.1| (PREDICTED: uncharacterized protein LOC101203170 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 3.7e-65
Identity = 161/279 (57.71%), Postives = 184/279 (65.95%), Query Frame = 1


Query: 1   MLRNRSRALMADQA----------------SPVSNSLFGSPRFKPFTPTTQSID--HSVI 60
           MLRNRSRA+   QA                 P+ NSLFGSP++K F+PT + ID  +SVI
Sbjct: 1   MLRNRSRAVSGKQALMAENQVSRFSSYSYTKPLENSLFGSPKYKAFSPTKRGIDDHNSVI 60

Query: 61  SPTSVLDS--KPFFSLQNPFSYDPNTKPNSPKKPIFPVNKHKISG-RNPIGLALIEEKYD 120
           SPTSVLDS  KPFFSLQNPF   PN K  +    + P     ISG + PIGLALIE+K D
Sbjct: 61  SPTSVLDSNNKPFFSLQNPFIKLPNPKIIAKTTRVSP---EIISGPKKPIGLALIEDKND 120

Query: 121 -STLSKSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFPSGIGDGGMMTVKEMEVCEEYTCV 180
            S  +KSVIF AKLRV+IPPP    SAVD GG         +G +MTVKEMEVCEEYTCV
Sbjct: 121 DSKPTKSVIFGAKLRVQIPPP---GSAVDGGGNHN-----NNGSLMTVKEMEVCEEYTCV 180

Query: 181 RTHGPDAKITHIFDNFVVKSSVDS----GPER-ISMADLKNKNKKNKKNKKNDFLSFCYT 240
           + HGP+AKITHIFDNFVVK+ VD     G  R  S AD + K KK   N  N FL FCYT
Sbjct: 181 KRHGPNAKITHIFDNFVVKTMVDDYYHYGSSRNFSTADWRKKKKKMNNNNNNSFLRFCYT 240

Query: 241 CNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEEQQQQ 253
              +L+LT DIYIYRGEKAFCSHECR QEMLLDEE + +
Sbjct: 241 WKNDLQLTNDIYIYRGEKAFCSHECRNQEMLLDEEDEDE 268

[Close]

BLAST of CmaCh08G003360 vs. NCBI nr
Match: gi|659131356|ref|XP_008465643.1| (PREDICTED: uncharacterized protein LOC103503283 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 5.3e-64
Identity = 159/280 (56.79%), Postives = 182/280 (65.00%), Query Frame = 1


Query: 1   MLRNRSRALMADQA----------------SPVSNSLFGSPRFKPFTPTTQSIDH--SVI 60
           ML NRSRA+   QA                 P+ NSLFGSP++K F+PT Q+ID   SVI
Sbjct: 1   MLWNRSRAVSGKQALMADSQISRFSSYSYTKPLENSLFGSPKYKAFSPTKQAIDDHTSVI 60

Query: 61  SPTSVLDS--KPFFSLQNPFSYDPNTKPNSPKKPIFPVNKHKISG-RNPIGLALIEEKYD 120
           SPTSVLDS  K FFSLQNPF   PN K  +    I   ++  ISG + PIGLALIE+K D
Sbjct: 61  SPTSVLDSNNKSFFSLQNPFIKLPNPKVIAKTTKI---SQEIISGPKKPIGLALIEDKND 120

Query: 121 -STLSKSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFPSGIGDGGMMTVKEMEVCEEYTCV 180
            S  +KSVIF AKLR++IPPP   DS VD GG     +    G +MTVKEMEVCEEYTCV
Sbjct: 121 DSKPTKSVIFSAKLRLQIPPP---DSTVDGGGNHNNNNNDNIGTLMTVKEMEVCEEYTCV 180

Query: 181 RTHGPDAKITHIFDNFVVKSSVDS-----GPERISMADLKNKNKKNKKNKKNDFLSFCYT 240
           + HGP+AKITHIFDNFVVK+ VD           SMAD     +K KK   NDFL FCYT
Sbjct: 181 KRHGPNAKITHIFDNFVVKTLVDDYCHYGSSCNFSMAD----RRKKKKMNNNDFLRFCYT 240

Query: 241 CNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEEQQQQS 254
           C  +L+LT DIYIYRGEK FCSHECR QEMLLDEE +  S
Sbjct: 241 CKNDLQLTNDIYIYRGEKGFCSHECRNQEMLLDEEDEDSS 270

[Close]

BLAST of CmaCh08G003360 vs. NCBI nr
Match: gi|595793411|ref|XP_007200454.1| (hypothetical protein PRUPE_ppa008958mg [Prunus persica])

HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40
Identity = 133/302 (44.04%), Postives = 158/302 (52.32%), Query Frame = 1


Query: 1   MLRNRSRA------LMAD---QASPVSN------SLFGSPRFKPFTPTTQSIDHSVISPT 60
           MLRNRSRA      LMAD   Q+SP         S FGSPRF+ FT    S   S+ISPT
Sbjct: 19  MLRNRSRAVTSKQALMADHTSQSSPTQKNYTKAPSFFGSPRFRAFTIKGHSETDSLISPT 78

Query: 61  SVLDSKPFFSLQNPFSYDPNTKPNSPKKPIFPVNKHKISGRNP----IGLALIE----EK 120
           S+LDSKPF     PFSYD N +P +PK     V+ +K S   P    IGLAL+E    EK
Sbjct: 79  SILDSKPF-PFATPFSYDQN-QPKTPKV----VSANKSSWHQPEPKGIGLALLETLNDEK 138

Query: 121 YDSTLSK----SVIFRAKLRVKIPPPLLPDSAVDDGGGDLFP------------SGIGDG 180
            +   SK     V+F  KLRV+IP  L P SA+        P            S IG  
Sbjct: 139 LEDNASKPNSGKVLFGTKLRVQIP--LFPASALSPTQSPKSPADFKIKIRNSQSSAIGSA 198

Query: 181 ----------------GMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPE 240
                           G  +V EME+ E+YTCV + GP+ + THIFDN +V+S       
Sbjct: 199 ISGIQTEHSNSAQAPTGCASVSEMELSEDYTCVISRGPNPRTTHIFDNCIVESFY----- 258

Query: 241 RISMADLKNKNKKNKKNKKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLL 248
             S++D          +    FLSFCYTC +NLE   DIYIYRGEKAFCS ECRYQEMLL
Sbjct: 259 --SLSD-------QSSSASVSFLSFCYTCKKNLEQKNDIYIYRGEKAFCSRECRYQEMLL 298

[Close]

BLAST of CmaCh08G003360 vs. NCBI nr
Match: gi|645259513|ref|XP_008235397.1| (PREDICTED: uncharacterized protein LOC103334227 [Prunus mume])

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 132/302 (43.71%), Postives = 157/302 (51.99%), Query Frame = 1


Query: 1   MLRNRSRA------LMAD---QASPVSN------SLFGSPRFKPFTPTTQSIDHSVISPT 60
           MLRNRSRA      LMAD   Q+SP         S FGSPRF+ FT    S   S+ISPT
Sbjct: 19  MLRNRSRAVTSKQALMADHSSQSSPTQKNYTKAPSFFGSPRFRAFTIKGHSETDSLISPT 78

Query: 61  SVLDSKPFFSLQNPFSYDPNTKPNSPKKPIFPVNKHKISGRNP----IGLALIE----EK 120
           S+LDSKPF     PFSYD N +P +PK     V+ +K S   P    IGLAL+E    EK
Sbjct: 79  SILDSKPF-PFATPFSYDQN-QPKTPKV----VSANKSSWHQPEPKGIGLALLETLNDEK 138

Query: 121 YDSTLSK----SVIFRAKLRVKIPPPLLPDSAVDDGGGDLFP------------SGIGDG 180
            +   SK     V+F  KLRV+IPP   P SA+        P            S IG  
Sbjct: 139 LEDNASKPNSGKVLFGTKLRVQIPP--FPASALSPTQSPKSPADFKIKTRNSQSSAIGSA 198

Query: 181 ----------------GMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPE 240
                           G  +V EME+ E+YTCV + GP+ + THIFDN +V+S       
Sbjct: 199 NSGIQTEHSNSAQAPTGCASVSEMELSEDYTCVISRGPNPRTTHIFDNCIVESFY----- 258

Query: 241 RISMADLKNKNKKNKKNKKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLL 248
             S++D          +    FLSFCYTC +NLE   DIYIY GEKAFCS ECRYQEMLL
Sbjct: 259 --SLSD-------QSSSASVSFLSFCYTCKKNLEQKNDIYIYGGEKAFCSRECRYQEMLL 298

[Close]

BLAST of CmaCh08G003360 vs. NCBI nr
Match: gi|590717202|ref|XP_007050556.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 127/305 (41.64%), Postives = 160/305 (52.46%), Query Frame = 1


Query: 1   MLRNRSRA------LMAD---QASPVSN------SLFGSPRFKPFTPTTQSIDHSVISPT 60
           MLRNRSRA      LMAD   Q++P  N      S FGSPRFK FT        +V SPT
Sbjct: 1   MLRNRSRAVTSKQALMADHSSQSTPAQNYTRPIPSFFGSPRFKAFTTKGLPDTEAVKSPT 60

Query: 61  SVLDSKPFFSLQNPFSYDPNTKPNSPKKPIFPVNKH-----KISGRNPIGLALIEEKYDS 120
           S+LD+KP F   +PF +D N +P SP+    P NK      K+  +  IGLA+++   D+
Sbjct: 61  SILDNKPLFPFGSPFGFDIN-QPKSPRV-FSPNNKQQHLPEKLDSKG-IGLAIVDTLNDT 120

Query: 121 ---------TLSKSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFPSGIGDG---------- 180
                    T +K V+F AKLRV+IPP  LP S        + P+  G            
Sbjct: 121 PIEDKSSSETSNKMVLFGAKLRVQIPP--LPSSLRSPTTSPISPTYFGIKNRNSHLSSPF 180

Query: 181 -----------------GMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGP 240
                            G + V+EME+ E+YTCV +HGP+ K THIFDN VV+S      
Sbjct: 181 GSPDSDIHVKDSPRVFTGCLPVREMELSEDYTCVISHGPNPKTTHIFDNCVVES------ 240

Query: 241 ERISMADLKNKNKKNKKNKKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEML 250
                  L +K     K+    FLSFC+TC +NLE   DIY+YRGEKAFCS ECRYQEML
Sbjct: 241 ----YCTLPDK----PKSAPESFLSFCHTCKKNLEQKIDIYMYRGEKAFCSQECRYQEML 286

The following BLAST results are available for this feature:

BLAST of CmaCh08G003360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MARD1_ARATH	7.0e-32	39.01	Protein MARD1 OS=Arabidopsis thaliana GN=MARD1 PE=2 SV=2	[more]

BLAST of CmaCh08G003360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8U5_CUCSA	2.6e-65	57.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G388300 PE=4 SV=1	[more]
M5VXH5_PRUPE	2.8e-40	44.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008958mg PE=4 SV=1	[more]
A0A061DXK3_THECC	1.1e-39	41.64	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_004326 PE=4 SV=1	[more]
A0A0D2QSB4_GOSRA	3.5e-38	41.53	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G138400 PE=4 SV=1	[more]
W9QKS7_9ROSA	4.5e-38	41.18	Uncharacterized protein OS=Morus notabilis GN=L484_002440 PE=4 SV=1	[more]

BLAST of CmaCh08G003360 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G63210.1	3.9e-33	39.01	Protein of unknown function (DUF581)	[more]
AT3G22550.1	1.8e-25	32.26	Protein of unknown function (DUF581)	[more]
AT5G11460.1	3.6e-18	39.84	Protein of unknown function (DUF581)	[more]
AT2G25690.1	1.6e-13	36.97	Protein of unknown function (DUF581)	[more]
AT5G49120.1	1.2e-08	53.49	Protein of unknown function (DUF581)	[more]

BLAST of CmaCh08G003360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458484\|ref\|XP_004146977.1\|	3.7e-65	57.71	PREDICTED: uncharacterized protein LOC101203170 [Cucumis sativus]	[more]
gi\|659131356\|ref\|XP_008465643.1\|	5.3e-64	56.79	PREDICTED: uncharacterized protein LOC103503283 [Cucumis melo]	[more]
gi\|595793411\|ref\|XP_007200454.1\|	4.1e-40	44.04	hypothetical protein PRUPE_ppa008958mg [Prunus persica]	[more]
gi\|645259513\|ref\|XP_008235397.1\|	1.2e-39	43.71	PREDICTED: uncharacterized protein LOC103334227 [Prunus mume]	[more]
gi\|590717202\|ref\|XP_007050556.1\|	1.6e-39	41.64	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007650	Zf-FLZ_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G003360.1	CmaCh08G003360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007650	Zf-FLZ domain	PFAM	PF04570	zf-FLZ	coord: 198..248 score: 4.5
None	No IPR available	PANTHER	PTHR33059	FAMILY NOT NAMED	coord: 2..250 score: 4.1
None	No IPR available	PANTHER	PTHR33059:SF11	SUBFAMILY NOT NAMED	coord: 2..250 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G003360	Cucsa.084340	Cucumber (Gy14) v1	cgycmaB0158
CmaCh08G003360	Cla014776	Watermelon (97103) v1	cmawmB856
CmaCh08G003360	Csa7G388300	Cucumber (Chinese Long) v2	cmacuB914
CmaCh08G003360	ClCG09G007210	Watermelon (Charleston Gray)	cmawcgB786
CmaCh08G003360	CSPI07G16210	Wild cucumber (PI 183967)	cmacpiB934
CmaCh08G003360	CmoCh17G011680	Cucurbita moschata (Rifu)	cmacmoB896
CmaCh08G003360	CmoCh08G011110	Cucurbita moschata (Rifu)	cmacmoB914
CmaCh08G003360	CmoCh08G003320	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G003360	Lsi09G013100	Bottle gourd (USVL1VR-Ls)	cmalsiB816
CmaCh08G003360	Lsi02G022780	Bottle gourd (USVL1VR-Ls)	cmalsiB822
CmaCh08G003360	Cp4.1LG12g11530	Cucurbita pepo (Zucchini)	cmacpeB902
CmaCh08G003360	Cp4.1LG17g06260	Cucurbita pepo (Zucchini)	cmacpeB917
CmaCh08G003360	Cp4.1LG17g01600	Cucurbita pepo (Zucchini)	cmacpeB918
CmaCh08G003360	CsaV3_7G027960	Cucumber (Chinese Long) v3	cmacucB1084
CmaCh08G003360	Cla97C09G169810	Watermelon (97103) v2	cmawmbB940
CmaCh08G003360	Bhi09G000892	Wax gourd	cmawgoB1121
CmaCh08G003360	CsGy7G014700	Cucumber (Gy14) v2	cgybcmaB973
CmaCh08G003360	Carg24891	Silver-seed gourd	carcmaB0070
CmaCh08G003360	Carg07262	Silver-seed gourd	carcmaB0148

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh08G003360	CmaCh17G011900	Cucurbita maxima (Rimu)	cmacmaB382

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G003360	Melon (DHL92) v3.5.1	cmameB825
CmaCh08G003360	Watermelon (Charleston Gray)	cmawcgB813
CmaCh08G003360	Watermelon (97103) v1	cmawmB867
CmaCh08G003360	Bottle gourd (USVL1VR-Ls)	cmalsiB841
CmaCh08G003360	Melon (DHL92) v3.6.1	cmamedB923
CmaCh08G003360	Cucumber (Chinese Long) v3	cmacucB1051
CmaCh08G003360	Watermelon (97103) v2	cmawmbB929
CmaCh08G003360	Wax gourd	cmawgoB1114
CmaCh08G003360	Cucurbita maxima (Rimu)	cmacmaB465
CmaCh08G003360	Cucurbita maxima (Rimu)	cmacmaB512
CmaCh08G003360	Cucurbita maxima (Rimu)	cmacmaB555