CmoCh08G003320 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G003320
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2
LocationCmo_Chr08 : 2061030 .. 2062512 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCAAACAGAAGTAGGATAAGAAGATAAGGTTTGCTTTTCTTTTTTTTTTAATTTGAATGAGTCATTACATTTCCACTAATTACATCAAACTAATGACAACTTTTGGAGTGAAAAAAGGAGCGATTTTTGGAGGTTTTGTAGGATTGTGTTATTAAGTTGAGTTCAACCCATCATCCATGTCTTCTTCTTCATCATCATCTTCATCTGTTTTTCCTCTGTAAATGCGTCTGATTGGCCTTCATCAGCGGTGGTTTGTTGTTCTGTTCTTGTTCTGGTTCTTGTTCTTGTTCCACGGAACTGCCATGGAAGCAACTGAAGTTTAGCACTCATTTTCGAAGGCTTCTTCTCATTTAGATCCGTTTTTCCATAGGGTTTCTAATACCCTTTTGTTTATTGAATCCAAATCCAAATCCAGAAACTGGTTTCTCAAGATGTTGAGGAACAGATCTAGAGCTTTAATGGCGGATCAAGCTTCACCAGTTTCAAATTCTCTGTTTGGTTCTCCAAGATTCAAACCTTTTACACCAACAACAACACAATCAATTGATCACTCTGTGATTAGTCCCACTTCTGTTTTTGATTCCAAACCATTTTTCTCTCTTCAAAATCCCTTCTCTTGTGATCCCAACACAAAACCCAATTCCCCCAAGAAACCAATTTTCCCAGGAAACAAACAGAAAATCTCTGGCAAAAACCCAATTGGGCTTGCTTTAATTGAGGAGAAATACGATTCCACGCTCTGTAAAAGTGTAATTTTCAGAGCTAAACTTCGTGTCAAAATCCCTCCTCCTCTGCTGCCGGATTCCGCCGTAGACGACGGCGGTGGAGATTTGTTTCCTTCTGGGATTGGTGATGGGGGGATGATGACGGTGAAGGAGATGGAGGTTTGTGAAGAGTATACTTGTGTGAGAACTCATGGACCTGATGCTAAAATTACTCATATTTTTGATAACTTCGTGGTGAAAAGCTCTGTTGATTCTGGACCTGAGAGAATTTCCATGGCGGATTTGAAGAACAAGAACAAGAACAACAAGAACAACAAGAATGATTTTCTTAGCTTCTGCTACACCTGCAACAGAAATCTTGAGCTCACAAAGGACATCTATATTTACAGGTGCGCCCATTTTTTCTGGTTTGTTCTTGGTCTGGAAGAGTATTAATTTTGGTCCATTGCTGTGTTCATTGCAGAGGTGAGAAAGCTTTCTGCAGCCATGAATGTCGCTACCAAGAAATGCTTTTGGATGAAGAACAACAACAATCATCTTGATTCTTCCATCATCGTCTTCAACCTCTGGTTTTCTGGTTCTTCTTCCAGTAAATTTTCACATAAAATTCATGGGTTTCTTTTTTTTTTTTAATAATAATTTTTGTTTCTTTTTGGGTTTCTCTCATGAAGATATAGATAAGAGAGAGAAGTGTTTGTAGAGAGAGAAATTATAAAATATGTTCAATATGTTTACTGAAATGATTGCTGCTTTGGCT

mRNA sequence

AGCAAACAGAAGTAGGATAAGAAGATAAGGTTTGCTTTTCTTTTTTTTTTAATTTGAATGAGTCATTACATTTCCACTAATTACATCAAACTAATGACAACTTTTGGAGTGAAAAAAGGAGCGATTTTTGGAGGTTTTGTAGGATTGTGTTATTAAGTTGAGTTCAACCCATCATCCATGTCTTCTTCTTCATCATCATCTTCATCTGTTTTTCCTCTGTAAATGCGTCTGATTGGCCTTCATCAGCGGTGGTTTGTTGTTCTGTTCTTGTTCTGGTTCTTGTTCTTGTTCCACGGAACTGCCATGGAAGCAACTGAAGTTTAGCACTCATTTTCGAAGGCTTCTTCTCATTTAGATCCGTTTTTCCATAGGGTTTCTAATACCCTTTTGTTTATTGAATCCAAATCCAAATCCAGAAACTGGTTTCTCAAGATGTTGAGGAACAGATCTAGAGCTTTAATGGCGGATCAAGCTTCACCAGTTTCAAATTCTCTGTTTGGTTCTCCAAGATTCAAACCTTTTACACCAACAACAACACAATCAATTGATCACTCTGTGATTAGTCCCACTTCTGTTTTTGATTCCAAACCATTTTTCTCTCTTCAAAATCCCTTCTCTTGTGATCCCAACACAAAACCCAATTCCCCCAAGAAACCAATTTTCCCAGGAAACAAACAGAAAATCTCTGGCAAAAACCCAATTGGGCTTGCTTTAATTGAGGAGAAATACGATTCCACGCTCTGTAAAAGTGTAATTTTCAGAGCTAAACTTCGTGTCAAAATCCCTCCTCCTCTGCTGCCGGATTCCGCCGTAGACGACGGCGGTGGAGATTTGTTTCCTTCTGGGATTGGTGATGGGGGGATGATGACGGTGAAGGAGATGGAGGTTTGTGAAGAGTATACTTGTGTGAGAACTCATGGACCTGATGCTAAAATTACTCATATTTTTGATAACTTCGTGGTGAAAAGCTCTGTTGATTCTGGACCTGAGAGAATTTCCATGGCGGATTTGAAGAACAAGAACAAGAACAACAAGAACAACAAGAATGATTTTCTTAGCTTCTGCTACACCTGCAACAGAAATCTTGAGCTCACAAAGGACATCTATATTTACAGAGGTGAGAAAGCTTTCTGCAGCCATGAATGTCGCTACCAAGAAATGCTTTTGGATGAAGAACAACAACAATCATCTTGATTCTTCCATCATCGTCTTCAACCTCTGGTTTTCTGGTTCTTCTTCCAGTAAATTTTCACATAAAATTCATGGGTTTCTTTTTTTTTTTTAATAATAATTTTTGTTTCTTTTTGGGTTTCTCTCATGAAGATATAGATAAGAGAGAGAAGTGTTTGTAGAGAGAGAAATTATAAAATATGTTCAATATGTTTACTGAAATGATTGCTGCTTTGGCT

Coding sequence (CDS)

ATGTTGAGGAACAGATCTAGAGCTTTAATGGCGGATCAAGCTTCACCAGTTTCAAATTCTCTGTTTGGTTCTCCAAGATTCAAACCTTTTACACCAACAACAACACAATCAATTGATCACTCTGTGATTAGTCCCACTTCTGTTTTTGATTCCAAACCATTTTTCTCTCTTCAAAATCCCTTCTCTTGTGATCCCAACACAAAACCCAATTCCCCCAAGAAACCAATTTTCCCAGGAAACAAACAGAAAATCTCTGGCAAAAACCCAATTGGGCTTGCTTTAATTGAGGAGAAATACGATTCCACGCTCTGTAAAAGTGTAATTTTCAGAGCTAAACTTCGTGTCAAAATCCCTCCTCCTCTGCTGCCGGATTCCGCCGTAGACGACGGCGGTGGAGATTTGTTTCCTTCTGGGATTGGTGATGGGGGGATGATGACGGTGAAGGAGATGGAGGTTTGTGAAGAGTATACTTGTGTGAGAACTCATGGACCTGATGCTAAAATTACTCATATTTTTGATAACTTCGTGGTGAAAAGCTCTGTTGATTCTGGACCTGAGAGAATTTCCATGGCGGATTTGAAGAACAAGAACAAGAACAACAAGAACAACAAGAATGATTTTCTTAGCTTCTGCTACACCTGCAACAGAAATCTTGAGCTCACAAAGGACATCTATATTTACAGAGGTGAGAAAGCTTTCTGCAGCCATGAATGTCGCTACCAAGAAATGCTTTTGGATGAAGAACAACAACAATCATCTTGA
Homology
[Close]
BLAST of CmoCh08G003320 vs. Swiss-Prot
Match: MARD1_ARATH (Protein MARD1 OS=Arabidopsis thaliana GN=MARD1 PE=2 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 9.1e-32
Identity = 110/281 (39.15%), Postives = 150/281 (53.38%), Query Frame = 1 

Query: 1   MLRNRSRA----------LMADQASP-------VSNSLFGSPRFKPFTPT---TTQSIDH 60
           MLRN+ RA          LMADQ  P        S SLF SP+F+ FT     T    D 
Sbjct: 1   MLRNKPRAAVTTKKQTSLLMADQPPPPKPNTCHCSPSLFSSPKFRFFTSKMMMTPFDSDF 60

Query: 61  SVISPTSVFDSKP-FFSLQNPFSCDPNTKPNSPKKPIFPGNKQKISGKNPIGLALIEEKY 120
           S++SPTS+ ++ P  FS +NP       KP S  +P  P N Q+    +  GLA + +  
Sbjct: 61  SLVSPTSILEANPSIFSSKNP-------KPVSYFEPTIP-NPQRFHSPDVFGLADLVKDG 120

Query: 121 DST-------LCKSVIFRAKLRVKIPPPLLPDSAVDDGG--GDLFP----SGIGDGGMMT 180
           DS        + K V+F +KLRV+IP      S+ D G   G  +P    S      ++ 
Sbjct: 121 DSNRDHSRKPVNKMVLFGSKLRVQIP------SSADFGTKTGIRYPPCQLSPCVQTKVLA 180

Query: 181 VKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLKNKNKNNKNNKND 240
           V E++  E+YT V +HGP+  ITHIFDN V    V++ P  + +     + K+ ++    
Sbjct: 181 VSEIDQTEDYTRVISHGPNPTITHIFDNSVF---VEATPCSVPLPQPAMETKSTES---- 240

Query: 241 FLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDE 248
           FLS C+TC +NL+  +DIYIYRGEK FCS ECRYQEMLLD+
Sbjct: 241 FLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQ 260

[Close]
BLAST of CmoCh08G003320 vs. TrEMBL
Match: A0A0A0K8U5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G388300 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.8e-64
Identity = 163/277 (58.84%), Postives = 181/277 (65.34%), Query Frame = 1 

Query: 1   MLRNRSRALMADQA----------------SPVSNSLFGSPRFKPFTPTTTQSIDH-SVI 60
           MLRNRSRA+   QA                 P+ NSLFGSP++K F+PT     DH SVI
Sbjct: 1   MLRNRSRAVSGKQALMAENQVSRFSSYSYTKPLENSLFGSPKYKAFSPTKRGIDDHNSVI 60

Query: 61  SPTSVFDS--KPFFSLQNPFSCDPNTKPNSPKKPIFPGNKQKISG-KNPIGLALIEEKYD 120
           SPTSV DS  KPFFSLQNPF   PN K  +    + P   + ISG K PIGLALIE+K D
Sbjct: 61  SPTSVLDSNNKPFFSLQNPFIKLPNPKIIAKTTRVSP---EIISGPKKPIGLALIEDKND 120

Query: 121 -STLCKSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFPSGIGDGGMMTVKEMEVCEEYTCV 180
            S   KSVIF AKLRV+IPPP    SAVD GG         +G +MTVKEMEVCEEYTCV
Sbjct: 121 DSKPTKSVIFGAKLRVQIPPP---GSAVDGGGNHN-----NNGSLMTVKEMEVCEEYTCV 180

Query: 181 RTHGPDAKITHIFDNFVVKSSVDS----GPER-ISMADL-KNKNKNNKNNKNDFLSFCYT 240
           + HGP+AKITHIFDNFVVK+ VD     G  R  S AD  K K K N NN N FL FCYT
Sbjct: 181 KRHGPNAKITHIFDNFVVKTMVDDYYHYGSSRNFSTADWRKKKKKMNNNNNNSFLRFCYT 240

Query: 241 CNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEEQQ 251
              +L+LT DIYIYRGEKAFCSHECR QEMLLDEE +
Sbjct: 241 WKNDLQLTNDIYIYRGEKAFCSHECRNQEMLLDEEDE 266

[Close]
BLAST of CmoCh08G003320 vs. TrEMBL
Match: A0A061DXK3_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_004326 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 128/305 (41.97%), Postives = 160/305 (52.46%), Query Frame = 1 

Query: 1   MLRNRSRA------LMAD---QASPVSN------SLFGSPRFKPFTPTTTQSIDHSVISP 60
           MLRNRSRA      LMAD   Q++P  N      S FGSPRFK FT       + +V SP
Sbjct: 1   MLRNRSRAVTSKQALMADHSSQSTPAQNYTRPIPSFFGSPRFKAFTTKGLPDTE-AVKSP 60

Query: 61  TSVFDSKPFFSLQNPFSCDPNTKPNSPKKPIFPGNKQ-----KISGKNPIGLALIEEKYD 120
           TS+ D+KP F   +PF  D N +P SP+    P NKQ     K+  K  IGLA+++   D
Sbjct: 61  TSILDNKPLFPFGSPFGFDIN-QPKSPRV-FSPNNKQQHLPEKLDSKG-IGLAIVDTLND 120

Query: 121 S---------TLCKSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFPSGIGDG--------- 180
           +         T  K V+F AKLRV+IPP  LP S        + P+  G           
Sbjct: 121 TPIEDKSSSETSNKMVLFGAKLRVQIPP--LPSSLRSPTTSPISPTYFGIKNRNSHLSSP 180

Query: 181 ------------------GMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSG 240
                             G + V+EME+ E+YTCV +HGP+ K THIFDN VV+S     
Sbjct: 181 FGSPDSDIHVKDSPRVFTGCLPVREMELSEDYTCVISHGPNPKTTHIFDNCVVES----- 240

Query: 241 PERISMADLKNKNKNNKNNKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEML 250
                   L +K K+   +   FLSFC+TC +NLE   DIY+YRGEKAFCS ECRYQEML
Sbjct: 241 -----YCTLPDKPKSAPES---FLSFCHTCKKNLEQKIDIYMYRGEKAFCSQECRYQEML 286

[Close]
BLAST of CmoCh08G003320 vs. TrEMBL
Match: M5VXH5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008958mg PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.9e-37
Identity = 129/300 (43.00%), Postives = 154/300 (51.33%), Query Frame = 1 

Query: 1   MLRNRSRA------LMAD---QASPVSN------SLFGSPRFKPFTPTTTQSIDHSVISP 60
           MLRNRSRA      LMAD   Q+SP         S FGSPRF+ FT       D S+ISP
Sbjct: 19  MLRNRSRAVTSKQALMADHTSQSSPTQKNYTKAPSFFGSPRFRAFTIKGHSETD-SLISP 78

Query: 61  TSVFDSKPFFSLQNPFSCDPNTKPNSPKKPIFPGNKQKISGKNP--IGLALIE----EKY 120
           TS+ DSKPF     PFS D N +P +PK  +   NK       P  IGLAL+E    EK 
Sbjct: 79  TSILDSKPF-PFATPFSYDQN-QPKTPK--VVSANKSSWHQPEPKGIGLALLETLNDEKL 138

Query: 121 DSTLCK----SVIFRAKLRVKIPPPLLPDSAVDDGGGDLFP------------SGIGDG- 180
           +    K     V+F  KLRV+IP  L P SA+        P            S IG   
Sbjct: 139 EDNASKPNSGKVLFGTKLRVQIP--LFPASALSPTQSPKSPADFKIKIRNSQSSAIGSAI 198

Query: 181 ---------------GMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPER 240
                          G  +V EME+ E+YTCV + GP+ + THIFDN +V+S        
Sbjct: 199 SGIQTEHSNSAQAPTGCASVSEMELSEDYTCVISRGPNPRTTHIFDNCIVESFY------ 258

Query: 241 ISMADLKNKNKNNKNNKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDE 248
            S++D       + +    FLSFCYTC +NLE   DIYIYRGEKAFCS ECRYQEMLLDE
Sbjct: 259 -SLSD------QSSSASVSFLSFCYTCKKNLEQKNDIYIYRGEKAFCSRECRYQEMLLDE 298

[Close]
BLAST of CmoCh08G003320 vs. TrEMBL
Match: A0A0D2QSB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G138400 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-36
Identity = 122/304 (40.13%), Postives = 152/304 (50.00%), Query Frame = 1 

Query: 1   MLRNRSRA------LMAD---QASPVSN------SLFGSPRFKPFTPTTTQSIDHSVISP 60
           MLRNR RA      LMAD   QASP  N      S F SPRFK FT       + S+ SP
Sbjct: 1   MLRNRPRAVTSKQTLMADHSSQASPAQNCTKPNPSFFDSPRFKAFTSKAFPDTE-SLKSP 60

Query: 61  TSVFDSKPFFSLQNPFSCDPNTKPNSPKKPIFPGNKQ-KISGKNPIGLALI--------E 120
           TS+ D+KPFF   NPF+ D N  P SP KP  P N         P G+AL          
Sbjct: 61  TSILDNKPFFPFGNPFALDRN-HPKSP-KPFSPNNTHPSPENSEPKGIALAIVDTFLNKN 120

Query: 121 EKYDSTLC-----KSVIFRAKLRVKIPPPLLP----------DSAVDDGGGDLFPSGIGD 180
           +  + + C     K V+F  +LRV+IPP L P          D  +      L P+    
Sbjct: 121 QTENKSCCEASNKKKVLFGTELRVQIPPVLPPSLVSPTTSPTDFGIKTRNSHLTPAFASP 180

Query: 181 -------------GGMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVK---SSVDSGP 240
                         G + V+EME+ E+YTCV +HGP+ + THIFDN VV+   S +D+ P
Sbjct: 181 NYGIHMKDSPRVFNGCLPVREMELSEDYTCVISHGPNPRTTHIFDNCVVENYCSVLDNKP 240

Query: 241 ERISMADLKNKNKNNKNNKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLL 250
                          K     FLSFC+TC +NL+   DIYIYRGEKAFCS ECR+QEMLL
Sbjct: 241 ---------------KPAPESFLSFCHTCKKNLQQKIDIYIYRGEKAFCSQECRHQEMLL 286

[Close]
BLAST of CmoCh08G003320 vs. TrEMBL
Match: G7IDN1_MEDTR (Senescence-associated protein SAG102 OS=Medicago truncatula GN=MTR_1g071780 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-36
Identity = 115/273 (42.12%), Postives = 151/273 (55.31%), Query Frame = 1 

Query: 1   MLRNRSRA-----LMADQASPVSN-----SLFGSPRFKPFTPTTTQSID--HSVISPTSV 60
           +LRNRSRA     LM +Q SP  N     SLFGSP ++ F  T+ +S+    ++ISPTS 
Sbjct: 2   LLRNRSRAVTKQTLMGEQ-SPNQNFTTLPSLFGSPNYRDFHFTSKKSLTGTEALISPTST 61

Query: 61  FDSKPFFSLQNPFSCDPNTKPNSPKKPIFPGNKQKISGKNPIGLALI--------EEKYD 120
            D+K   S +NPFS   + K  S         + K++ K  IGL LI         +  D
Sbjct: 62  LDTKALTSFENPFSITNSNKVCS--------TRDKVASKT-IGLGLIGVLKDEPSHQNSD 121

Query: 121 STLC-KSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFPSGIGDGGMMTVKEMEVCEEYTCV 180
             L  + V+F  +LRVKIPP  LP S  +               ++++ EME+ EEYTCV
Sbjct: 122 HKLSNRKVLFGTELRVKIPP--LPPSMFE-----------SQKSVLSLSEMELSEEYTCV 181

Query: 181 RTHGPDAKITHIFDNFVVKS---SVDSGPERISMADLKNKNKNNKNNKNDFLSFCYTCNR 240
            +HGP+ K THIFDN VV+    SV + P   SM               +FLSFCYTC  
Sbjct: 182 ISHGPNPKTTHIFDNCVVEESYCSVTNSPHSFSM---------------NFLSFCYTCKN 236

Query: 241 NLELTKDIYIYRGEKAFCSHECRYQEMLLDEEQ 250
           +LE TKDI+IYRGEKAFCS ECR++EM+LDE +
Sbjct: 242 HLEHTKDIFIYRGEKAFCSQECRHKEMVLDEAE 236

[Close]
BLAST of CmoCh08G003320 vs. TAIR10
Match: AT3G63210.1 (AT3G63210.1 Protein of unknown function (DUF581))

HSP 1 Score: 138.7 bits (348), Expect = 5.1e-33
Identity = 110/281 (39.15%), Postives = 150/281 (53.38%), Query Frame = 1 

Query: 1   MLRNRSRA----------LMADQASP-------VSNSLFGSPRFKPFTPT---TTQSIDH 60
           MLRN+ RA          LMADQ  P        S SLF SP+F+ FT     T    D 
Sbjct: 1   MLRNKPRAAVTTKKQTSLLMADQPPPPKPNTCHCSPSLFSSPKFRFFTSKMMMTPFDSDF 60

Query: 61  SVISPTSVFDSKP-FFSLQNPFSCDPNTKPNSPKKPIFPGNKQKISGKNPIGLALIEEKY 120
           S++SPTS+ ++ P  FS +NP       KP S  +P  P N Q+    +  GLA + +  
Sbjct: 61  SLVSPTSILEANPSIFSSKNP-------KPVSYFEPTIP-NPQRFHSPDVFGLADLVKDG 120

Query: 121 DST-------LCKSVIFRAKLRVKIPPPLLPDSAVDDGG--GDLFP----SGIGDGGMMT 180
           DS        + K V+F +KLRV+IP      S+ D G   G  +P    S      ++ 
Sbjct: 121 DSNRDHSRKPVNKMVLFGSKLRVQIP------SSADFGTKTGIRYPPCQLSPCVQTKVLA 180

Query: 181 VKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLKNKNKNNKNNKND 240
           V E++  E+YT V +HGP+  ITHIFDN V    V++ P  + +     + K+ ++    
Sbjct: 181 VSEIDQTEDYTRVISHGPNPTITHIFDNSVF---VEATPCSVPLPQPAMETKSTES---- 240

Query: 241 FLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDE 248
           FLS C+TC +NL+  +DIYIYRGEK FCS ECRYQEMLLD+
Sbjct: 241 FLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQ 260

[Close]
BLAST of CmoCh08G003320 vs. TAIR10
Match: AT3G22550.1 (AT3G22550.1 Protein of unknown function (DUF581))

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-26
Identity = 89/279 (31.90%), Postives = 138/279 (49.46%), Query Frame = 1 

Query: 1   MLRNRSR---ALMAD----------QASPVSNSLFGSPRFKPFTPTTTQSIDHSVISPTS 60
           ML+ RSR   ALMA+          + +P          FK FT       + +V SPTS
Sbjct: 1   MLKKRSRSKQALMAETNQSQNQKQSKTTPFPRLFTAFSSFKSFTE------NDAVASPTS 60

Query: 61  VFDSKPFFSLQNPFSCDPNTKPNSPKKPIFPGNKQKISGKNPIGLALIEEKYDSTLCK-- 120
           + D+KPF  L+NPF  D N K   P+       + K+  K  IGLA+++        +  
Sbjct: 61  ILDTKPFSVLKNPFGSD-NPKTQEPE------TRLKLEPKR-IGLAIVDSLIQDETPEPG 120

Query: 121 ----SVIFRAKLRVKIPPPLLPDSAVDDGGGDLFP--------SGIGD----GGMMTVKE 180
               +++F ++LR+++P   +  S       +  P        SG+G      G     +
Sbjct: 121 PRSGTILFGSQLRIRVPDSPISSSDFGIKTRNSQPETKKPGSESGLGSPRIISGYFPASD 180

Query: 181 MEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLKNKNKNNKNNKNDFLS 240
           ME+ E+YTCV  HGP+ +  HIFDN +V+S    G      +D  N++ ++ +  + FLS
Sbjct: 181 MELSEDYTCVTCHGPNPRTIHIFDNCIVESQ--PGVVFFRSSDPVNESDSDYSPPDSFLS 240

Query: 241 FCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEE 249
            C  C ++L    DI++YRG++AFCS ECR  EM++ EE
Sbjct: 241 CCCNCKKSLGPRDDIFMYRGDRAFCSSECRSIEMMMSEE 263

[Close]
BLAST of CmoCh08G003320 vs. TAIR10
Match: AT5G11460.1 (AT5G11460.1 Protein of unknown function (DUF581))

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-17
Identity = 49/123 (39.84%), Postives = 70/123 (56.91%), Query Frame = 1 

Query: 146 TVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLKNKN-KNNKNN- 205
           T  +ME+ E+YTCV +HGP+ K TH + + V++S        +   +LKN+  KN K + 
Sbjct: 200 TESDMEISEDYTCVISHGPNPKTTHFYGDQVMES--------VEREELKNRCCKNEKESI 259

Query: 206 ----------------KNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDE 251
                             DFLSFCY C++ L + +DIY+Y G KAFCS ECR +E+ LDE
Sbjct: 260 FAVAPLDLTTPVDVLPPKDFLSFCYGCSKKLGMGEDIYMYSGYKAFCSSECRSKEIDLDE 314

[Close]
BLAST of CmoCh08G003320 vs. TAIR10
Match: AT2G25690.1 (AT2G25690.1 Protein of unknown function (DUF581))

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-13
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1 

Query: 135 FPSGIGDGGMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLK 194
           FP    D    +  +ME   +YTC+  HGP+ K THI+ + V++               K
Sbjct: 202 FPGSGSDNAFSSEDDME---DYTCIIAHGPNPKTTHIYGDRVLECH-------------K 261

Query: 195 NKNKNNKNNK---------NDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLL 249
           N+ K +++NK         ++FL  C  CN+ L    DIY+YR EK+FCS ECR +EM++
Sbjct: 262 NELKGDEDNKEKFGSVFPSDNFLGICNFCNKKLGGGDDIYMYR-EKSFCSEECRSEEMMI 307

[Close]
BLAST of CmoCh08G003320 vs. TAIR10
Match: AT5G49120.1 (AT5G49120.1 Protein of unknown function (DUF581))

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-08
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 1 

Query: 207 FLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEEQ 250
           FL  C+ C R L   KDIY+Y+G++AFCS ECR ++M++DEE+
Sbjct: 68  FLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDEEE 110

[Close]
BLAST of CmoCh08G003320 vs. NCBI nr
Match: gi|449458484|ref|XP_004146977.1| (PREDICTED: uncharacterized protein LOC101203170 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 4.0e-64
Identity = 163/277 (58.84%), Postives = 181/277 (65.34%), Query Frame = 1 

Query: 1   MLRNRSRALMADQA----------------SPVSNSLFGSPRFKPFTPTTTQSIDH-SVI 60
           MLRNRSRA+   QA                 P+ NSLFGSP++K F+PT     DH SVI
Sbjct: 1   MLRNRSRAVSGKQALMAENQVSRFSSYSYTKPLENSLFGSPKYKAFSPTKRGIDDHNSVI 60

Query: 61  SPTSVFDS--KPFFSLQNPFSCDPNTKPNSPKKPIFPGNKQKISG-KNPIGLALIEEKYD 120
           SPTSV DS  KPFFSLQNPF   PN K  +    + P   + ISG K PIGLALIE+K D
Sbjct: 61  SPTSVLDSNNKPFFSLQNPFIKLPNPKIIAKTTRVSP---EIISGPKKPIGLALIEDKND 120

Query: 121 -STLCKSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFPSGIGDGGMMTVKEMEVCEEYTCV 180
            S   KSVIF AKLRV+IPPP    SAVD GG         +G +MTVKEMEVCEEYTCV
Sbjct: 121 DSKPTKSVIFGAKLRVQIPPP---GSAVDGGGNHN-----NNGSLMTVKEMEVCEEYTCV 180

Query: 181 RTHGPDAKITHIFDNFVVKSSVDS----GPER-ISMADL-KNKNKNNKNNKNDFLSFCYT 240
           + HGP+AKITHIFDNFVVK+ VD     G  R  S AD  K K K N NN N FL FCYT
Sbjct: 181 KRHGPNAKITHIFDNFVVKTMVDDYYHYGSSRNFSTADWRKKKKKMNNNNNNSFLRFCYT 240

Query: 241 CNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEEQQ 251
              +L+LT DIYIYRGEKAFCSHECR QEMLLDEE +
Sbjct: 241 WKNDLQLTNDIYIYRGEKAFCSHECRNQEMLLDEEDE 266

[Close]
BLAST of CmoCh08G003320 vs. NCBI nr
Match: gi|659131356|ref|XP_008465643.1| (PREDICTED: uncharacterized protein LOC103503283 [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 1.2e-63
Identity = 159/279 (56.99%), Postives = 180/279 (64.52%), Query Frame = 1 

Query: 1   MLRNRSRALMADQA----------------SPVSNSLFGSPRFKPFTPTTTQSIDH-SVI 60
           ML NRSRA+   QA                 P+ NSLFGSP++K F+PT     DH SVI
Sbjct: 1   MLWNRSRAVSGKQALMADSQISRFSSYSYTKPLENSLFGSPKYKAFSPTKQAIDDHTSVI 60

Query: 61  SPTSVFDS--KPFFSLQNPFSCDPNTKPNSPKKPIFPGNKQKISG-KNPIGLALIEEKY- 120
           SPTSV DS  K FFSLQNPF   PN K  +    I   +++ ISG K PIGLALIE+K  
Sbjct: 61  SPTSVLDSNNKSFFSLQNPFIKLPNPKVIAKTTKI---SQEIISGPKKPIGLALIEDKND 120

Query: 121 DSTLCKSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFPSGIGDGGMMTVKEMEVCEEYTCV 180
           DS   KSVIF AKLR++IPP   PDS VD GG     +    G +MTVKEMEVCEEYTCV
Sbjct: 121 DSKPTKSVIFSAKLRLQIPP---PDSTVDGGGNHNNNNNDNIGTLMTVKEMEVCEEYTCV 180

Query: 181 RTHGPDAKITHIFDNFVVKSSVD-----SGPERISMADLKNKNKNNKNNKNDFLSFCYTC 240
           + HGP+AKITHIFDNFVVK+ VD           SMAD   + K  K N NDFL FCYTC
Sbjct: 181 KRHGPNAKITHIFDNFVVKTLVDDYCHYGSSCNFSMAD---RRKKKKMNNNDFLRFCYTC 240

Query: 241 NRNLELTKDIYIYRGEKAFCSHECRYQEMLLDEEQQQSS 254
             +L+LT DIYIYRGEK FCSHECR QEMLLDEE + SS
Sbjct: 241 KNDLQLTNDIYIYRGEKGFCSHECRNQEMLLDEEDEDSS 270

[Close]
BLAST of CmoCh08G003320 vs. NCBI nr
Match: gi|657988580|ref|XP_008386467.1| (PREDICTED: uncharacterized protein LOC103448977 [Malus domestica])

HSP 1 Score: 169.9 bits (429), Expect = 5.9e-39
Identity = 124/277 (44.77%), Postives = 154/277 (55.60%), Query Frame = 1 

Query: 1   MLRNRSRA------LMADQASPV-------SNSLFGSPRFKPFTPTTTQSIDHSVISPTS 60
           MLRNRSR       LMAD    +       S S F SPRF+ FT   +   D ++ISPTS
Sbjct: 1   MLRNRSRTVTSKQPLMADSQPSLTQKNYSKSPSFFDSPRFRGFTMKGSSETDSNLISPTS 60

Query: 61  VFDS-KPFFSLQNPFSCDPNTKPNSPKKPIFPGNK---QKISGKNPIGLALI-------- 120
           + D+ KPF   +NPFS D   +P +PK  I PGNK   +K   K  IGLAL+        
Sbjct: 61  ILDTTKPFPFGKNPFSGD-QIQPKTPK--IQPGNKPFWEKSEAKG-IGLALVQTLKDENL 120

Query: 121 EEKYDSTLCKSVIFRAKLRVKIPPPLLPD----SAVDDGGGDLFP-SGIGDGGMMTVKEM 180
           E+K   T  + V+F  KLRV+IP  L        +V+ G     P SG G G +    EM
Sbjct: 121 EDKNSKTSNRKVLFGTKLRVQIPKTLNSQFSETGSVNSGIQTENPNSGSGSGCVSERSEM 180

Query: 181 EVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLKNKNKNNKNNKNDFLSF 240
           E+ E+YTCV + GP  + THIFDN +V+S         +++D  +    N      FLSF
Sbjct: 181 ELSEDYTCVISRGPKPRTTHIFDNCIVESYH-------TLSDQSSSGSEN------FLSF 240

Query: 241 CYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDE 248
           CYTC +NLE   DIYIYRGEKAFCS ECRYQEMLLDE
Sbjct: 241 CYTCRKNLEQKIDIYIYRGEKAFCSQECRYQEMLLDE 260

[Close]
BLAST of CmoCh08G003320 vs. NCBI nr
Match: gi|694383310|ref|XP_009367618.1| (PREDICTED: uncharacterized protein LOC103957220 [Pyrus x bretschneideri])

HSP 1 Score: 169.5 bits (428), Expect = 7.7e-39
Identity = 127/277 (45.85%), Postives = 155/277 (55.96%), Query Frame = 1 

Query: 1   MLRNRSRA------LMAD-QASP------VSNSLFGSPRFKPFTPTTTQSIDHSVISPTS 60
           MLRNRSRA      LMAD Q SP       S S F SPRF+ F    +   D ++ISPTS
Sbjct: 1   MLRNRSRAVTSKQPLMADSQPSPNHKNYSKSPSFFDSPRFRGFAIKGSSETDSNLISPTS 60

Query: 61  VFDS-KPFFSLQNPFSCDPNTKPNSPKKPIFPGNK---QKISGKNPIGLALI-------- 120
           + D+ KPF   +NPFS D   +P +PK    PGNK   +K   K  IGLAL+        
Sbjct: 61  ILDTTKPFPFGRNPFSGD-QIQPKTPKTQ--PGNKPFWEKSEAKG-IGLALVQTLKDENL 120

Query: 121 EEKYDSTLCKSVIFRAKLRVKIPPPLLPD----SAVDDGGGDLFP-SGIGDGGMMTVKEM 180
           E+K   T  + V+F  KLRV+IP  L        +V+ G     P SG G G +    EM
Sbjct: 121 EDKNSKTSNRKVLFGTKLRVQIPKTLNSQFSETGSVNSGIQTENPNSGSGSGCVSERSEM 180

Query: 181 EVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSGPERISMADLKNKNKNNKNNKNDFLSF 240
           E+ E+YTCV + GP  + THIFDN +V+S         +M+D  +    N      FLSF
Sbjct: 181 ELSEDYTCVISRGPTPRTTHIFDNCIVESYH-------TMSDQSSSGSEN------FLSF 240

Query: 241 CYTCNRNLELTKDIYIYRGEKAFCSHECRYQEMLLDE 248
           CYTC +NLE   DIYIYRGEKAFCS ECRYQEMLLDE
Sbjct: 241 CYTCRKNLEQKIDIYIYRGEKAFCSQECRYQEMLLDE 260

[Close]
BLAST of CmoCh08G003320 vs. NCBI nr
Match: gi|590717202|ref|XP_007050556.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 167.5 bits (423), Expect = 2.9e-38
Identity = 128/305 (41.97%), Postives = 160/305 (52.46%), Query Frame = 1 

Query: 1   MLRNRSRA------LMAD---QASPVSN------SLFGSPRFKPFTPTTTQSIDHSVISP 60
           MLRNRSRA      LMAD   Q++P  N      S FGSPRFK FT       + +V SP
Sbjct: 1   MLRNRSRAVTSKQALMADHSSQSTPAQNYTRPIPSFFGSPRFKAFTTKGLPDTE-AVKSP 60

Query: 61  TSVFDSKPFFSLQNPFSCDPNTKPNSPKKPIFPGNKQ-----KISGKNPIGLALIEEKYD 120
           TS+ D+KP F   +PF  D N +P SP+    P NKQ     K+  K  IGLA+++   D
Sbjct: 61  TSILDNKPLFPFGSPFGFDIN-QPKSPRV-FSPNNKQQHLPEKLDSKG-IGLAIVDTLND 120

Query: 121 S---------TLCKSVIFRAKLRVKIPPPLLPDSAVDDGGGDLFPSGIGDG--------- 180
           +         T  K V+F AKLRV+IPP  LP S        + P+  G           
Sbjct: 121 TPIEDKSSSETSNKMVLFGAKLRVQIPP--LPSSLRSPTTSPISPTYFGIKNRNSHLSSP 180

Query: 181 ------------------GMMTVKEMEVCEEYTCVRTHGPDAKITHIFDNFVVKSSVDSG 240
                             G + V+EME+ E+YTCV +HGP+ K THIFDN VV+S     
Sbjct: 181 FGSPDSDIHVKDSPRVFTGCLPVREMELSEDYTCVISHGPNPKTTHIFDNCVVES----- 240

Query: 241 PERISMADLKNKNKNNKNNKNDFLSFCYTCNRNLELTKDIYIYRGEKAFCSHECRYQEML 250
                   L +K K+   +   FLSFC+TC +NLE   DIY+YRGEKAFCS ECRYQEML
Sbjct: 241 -----YCTLPDKPKSAPES---FLSFCHTCKKNLEQKIDIYMYRGEKAFCSQECRYQEML 286

The following BLAST results are available for this feature:
BLAST of CmoCh08G003320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MARD1_ARATH9.1e-3239.15Protein MARD1 OS=Arabidopsis thaliana GN=MARD1 PE=2 SV=2[more]
BLAST of CmoCh08G003320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8U5_CUCSA2.8e-6458.84Uncharacterized protein OS=Cucumis sativus GN=Csa_7G388300 PE=4 SV=1[more]
A0A061DXK3_THECC2.0e-3841.97Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_004326 PE=4 SV=1[more]
M5VXH5_PRUPE2.9e-3743.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008958mg PE=4 SV=1[more]
A0A0D2QSB4_GOSRA1.1e-3640.13Uncharacterized protein OS=Gossypium raimondii GN=B456_007G138400 PE=4 SV=1[more]
G7IDN1_MEDTR1.1e-3642.12Senescence-associated protein SAG102 OS=Medicago truncatula GN=MTR_1g071780 PE=2... [more]
BLAST of CmoCh08G003320 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G63210.15.1e-3339.15 Protein of unknown function (DUF581)[more]
AT3G22550.13.5e-2631.90 Protein of unknown function (DUF581)[more]
AT5G11460.15.1e-1739.84 Protein of unknown function (DUF581)[more]
AT2G25690.13.4e-1336.59 Protein of unknown function (DUF581)[more]
AT5G49120.11.1e-0853.49 Protein of unknown function (DUF581)[more]
BLAST of CmoCh08G003320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458484|ref|XP_004146977.1|4.0e-6458.84PREDICTED: uncharacterized protein LOC101203170 [Cucumis sativus][more]
gi|659131356|ref|XP_008465643.1|1.2e-6356.99PREDICTED: uncharacterized protein LOC103503283 [Cucumis melo][more]
gi|657988580|ref|XP_008386467.1|5.9e-3944.77PREDICTED: uncharacterized protein LOC103448977 [Malus domestica][more]
gi|694383310|ref|XP_009367618.1|7.7e-3945.85PREDICTED: uncharacterized protein LOC103957220 [Pyrus x bretschneideri][more]
gi|590717202|ref|XP_007050556.1|2.9e-3841.97Uncharacterized protein isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007650Zf-FLZ_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G003320.1CmoCh08G003320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007650Zf-FLZ domainPFAMPF04570zf-FLZcoord: 198..248
score: 4.1
NoneNo IPR availablePANTHERPTHR33059FAMILY NOT NAMEDcoord: 2..250
score: 3.6
NoneNo IPR availablePANTHERPTHR33059:SF11SUBFAMILY NOT NAMEDcoord: 2..250
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G003320Cucsa.084340Cucumber (Gy14) v1cgycmoB0153
CmoCh08G003320CmaCh17G002260Cucurbita maxima (Rimu)cmacmoB373
CmoCh08G003320CmaCh17G011900Cucurbita maxima (Rimu)cmacmoB374
CmoCh08G003320CmaCh08G003360Cucurbita maxima (Rimu)cmacmoB913
CmoCh08G003320Cla007514Watermelon (97103) v1cmowmB874
CmoCh08G003320Cla014776Watermelon (97103) v1cmowmB843
CmoCh08G003320Csa7G388300Cucumber (Chinese Long) v2cmocuB900
CmoCh08G003320ClCG09G007210Watermelon (Charleston Gray)cmowcgB785
CmoCh08G003320ClCG06G006300Watermelon (Charleston Gray)cmowcgB804
CmoCh08G003320CSPI07G16210Wild cucumber (PI 183967)cmocpiB913
CmoCh08G003320Lsi09G013100Bottle gourd (USVL1VR-Ls)cmolsiB802
CmoCh08G003320Lsi02G022780Bottle gourd (USVL1VR-Ls)cmolsiB809
CmoCh08G003320Cp4.1LG17g06260Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G003320Cp4.1LG12g11530Cucurbita pepo (Zucchini)cmocpeB839
CmoCh08G003320CsaV3_7G027960Cucumber (Chinese Long) v3cmocucB1066
CmoCh08G003320Cla97C09G169810Watermelon (97103) v2cmowmbB916
CmoCh08G003320Cla97C06G115810Watermelon (97103) v2cmowmbB901
CmoCh08G003320Bhi09G000892Wax gourdcmowgoB1120
CmoCh08G003320CsGy7G014700Cucumber (Gy14) v2cgybcmoB955
CmoCh08G003320Carg07262Silver-seed gourdcarcmoB0157
CmoCh08G003320Carg24891Silver-seed gourdcarcmoB0074
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh08G003320CmoCh17G011680Cucurbita moschata (Rifu)cmocmoB319
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G003320Melon (DHL92) v3.5.1cmomeB809
CmoCh08G003320Watermelon (Charleston Gray)cmowcgB809
CmoCh08G003320Watermelon (97103) v1cmowmB854
CmoCh08G003320Bottle gourd (USVL1VR-Ls)cmolsiB825
CmoCh08G003320Melon (DHL92) v3.6.1cmomedB912
CmoCh08G003320Silver-seed gourdcarcmoB1024
CmoCh08G003320Cucumber (Chinese Long) v3cmocucB1035
CmoCh08G003320Watermelon (97103) v2cmowmbB905
CmoCh08G003320Wax gourdcmowgoB1113
CmoCh08G003320Cucurbita moschata (Rifu)cmocmoB401
CmoCh08G003320Cucurbita moschata (Rifu)cmocmoB485
CmoCh08G003320Cucurbita maxima (Rimu)cmacmoB536
CmoCh08G003320Cucurbita maxima (Rimu)cmacmoB838