CmaCh05G005980 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh05G005980
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr05 : 2988011 .. 2988304 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAGAATCATGATCATCATGGGACTGATTCCAAGCCTGCAAAAAAATCCATTAAGATTGACTCTATATTAATCGATCTATTTAGCTCGGATTATAAATGCAATGATCAAAAGAGTGAATTTTTCTCCATTCAGAAGCGTTTACAGCTTATTTATAGAGATGTCTTAATTATTGAGCTATATTTGTTCCGTGTTTTACGAGCTTTGGGGTTAATGGGTATTTTTCGTTTTTTTGGATATATTGTGTTGTAAGGGAGGGAGCTCGAGATGCGGGGTAGGGATAGCCTATAA

mRNA sequence

ATGGGAGAGAATCATGATCATCATGGGACTGATTCCAAGCCTGCAAAAAAATCCATTAAGATTGACTCTATATTAATCGATCTATTTAGCTCGGATTATAAATGCAATGATCAAAAGAGTGAATTTTTCTCCATTCAGAAGCGGAGGGAGCTCGAGATGCGGGGTAGGGATAGCCTATAA

Coding sequence (CDS)

ATGGGAGAGAATCATGATCATCATGGGACTGATTCCAAGCCTGCAAAAAAATCCATTAAGATTGACTCTATATTAATCGATCTATTTAGCTCGGATTATAAATGCAATGATCAAAAGAGTGAATTTTTCTCCATTCAGAAGCGGAGGGAGCTCGAGATGCGGGGTAGGGATAGCCTATAA

Protein sequence

MGENHDHHGTDSKPAKKSIKIDSILIDLFSSDYKCNDQKSEFFSIQKRRELEMRGRDSL
Homology
[Close]
BLAST of CmaCh05G005980 vs. TrEMBL
Match: A0A0A0LPT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G375180 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-07
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 1  MGENHDHHGTDSKPAKKSIKIDSILIDLFSSDYKCNDQKSEFFSIQ 47
          M EN+ H GTDS+PA+  ++IDSI IDLFSSD+ C+DQK E FSI+
Sbjct: 8  MEENNHHDGTDSRPARNFVQIDSIYIDLFSSDHICDDQKCELFSIR 53

[Close]
BLAST of CmaCh05G005980 vs. NCBI nr
Match: gi|778672077|ref|XP_011649739.1| (PREDICTED: protein EMBRYONIC FLOWER 1-like [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-07
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 1  MGENHDHHGTDSKPAKKSIKIDSILIDLFSSDYKCNDQKSEFFSIQ 47
          M EN+ H GTDS+PA+  ++IDSI IDLFSSD+ C+DQK E FSI+
Sbjct: 8  MEENNHHDGTDSRPARNFVQIDSIYIDLFSSDHICDDQKCELFSIR 53

[Close]
BLAST of CmaCh05G005980 vs. NCBI nr
Match: gi|659088526|ref|XP_008445028.1| (PREDICTED: protein EMBRYONIC FLOWER 1-like [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-07
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 1  MGENHDHHGTDSKPAKKSIKIDSILIDLFSSDYKCNDQKSEFFSIQ 47
          M EN+ H GTD++PA+K ++IDSI IDLFSSD+KC+ Q  E FSI+
Sbjct: 7  MEENNHHDGTDTRPARKFVQIDSIYIDLFSSDHKCDGQNCELFSIR 52

The following BLAST results are available for this feature:
BLAST of CmaCh05G005980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh05G005980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPT5_CUCSA1.6e-0763.04Uncharacterized protein OS=Cucumis sativus GN=Csa_2G375180 PE=4 SV=1[more]
BLAST of CmaCh05G005980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh05G005980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778672077|ref|XP_011649739.1|2.4e-0763.04PREDICTED: protein EMBRYONIC FLOWER 1-like [Cucumis sativus][more]
gi|659088526|ref|XP_008445028.1|4.0e-0760.87PREDICTED: protein EMBRYONIC FLOWER 1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G005980.1CmaCh05G005980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh05G005980Cucurbita pepo (Zucchini)cmacpeB766
CmaCh05G005980Cucurbita pepo (Zucchini)cmacpeB794
CmaCh05G005980Bottle gourd (USVL1VR-Ls)cmalsiB728
CmaCh05G005980Bottle gourd (USVL1VR-Ls)cmalsiB737
CmaCh05G005980Cucumber (Gy14) v2cgybcmaB251
CmaCh05G005980Melon (DHL92) v3.6.1cmamedB822
CmaCh05G005980Melon (DHL92) v3.6.1cmamedB826
CmaCh05G005980Silver-seed gourdcarcmaB0083
CmaCh05G005980Silver-seed gourdcarcmaB1356
CmaCh05G005980Cucumber (Chinese Long) v3cmacucB0927
CmaCh05G005980Cucumber (Chinese Long) v3cmacucB0939
CmaCh05G005980Watermelon (97103) v2cmawmbB803
CmaCh05G005980Watermelon (97103) v2cmawmbB830
CmaCh05G005980Wax gourdcmawgoB0944
CmaCh05G005980Wax gourdcmawgoB0962
CmaCh05G005980Cucurbita maxima (Rimu)cmacmaB194
CmaCh05G005980Cucumber (Gy14) v1cgycmaB0460
CmaCh05G005980Cucumber (Gy14) v1cgycmaB0873
CmaCh05G005980Cucurbita moschata (Rifu)cmacmoB767
CmaCh05G005980Cucurbita moschata (Rifu)cmacmoB786
CmaCh05G005980Wild cucumber (PI 183967)cmacpiB794
CmaCh05G005980Wild cucumber (PI 183967)cmacpiB805
CmaCh05G005980Cucumber (Chinese Long) v2cmacuB785
CmaCh05G005980Cucumber (Chinese Long) v2cmacuB796
CmaCh05G005980Melon (DHL92) v3.5.1cmameB728
CmaCh05G005980Watermelon (Charleston Gray)cmawcgB687
CmaCh05G005980Watermelon (Charleston Gray)cmawcgB709
CmaCh05G005980Watermelon (97103) v1cmawmB751
CmaCh05G005980Watermelon (97103) v1cmawmB768