CmaCh05G005980.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G005980.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr05 : 2988011 .. 2988304 (-)
Sequence length	180

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAGAATCATGATCATCATGGGACTGATTCCAAGCCTGCAAAAAAATCCATTAAGATTGACTCTATATTAATCGATCTATTTAGCTCGGATTATAAATGCAATGATCAAAAGAGTGAATTTTTCTCCATTCAGAAGCGTTTACAGCTTATTTATAGAGATGTCTTAATTATTGAGCTATATTTGTTCCGTGTTTTACGAGCTTTGGGGTTAATGGGTATTTTTCGTTTTTTTGGATATATTGTGTTGTAAGGGAGGGAGCTCGAGATGCGGGGTAGGGATAGCCTATAA

mRNA sequence

ATGGGAGAGAATCATGATCATCATGGGACTGATTCCAAGCCTGCAAAAAAATCCATTAAGATTGACTCTATATTAATCGATCTATTTAGCTCGGATTATAAATGCAATGATCAAAAGAGTGAATTTTTCTCCATTCAGAAGCGGAGGGAGCTCGAGATGCGGGGTAGGGATAGCCTATAA

Coding sequence (CDS)

ATGGGAGAGAATCATGATCATCATGGGACTGATTCCAAGCCTGCAAAAAAATCCATTAAGATTGACTCTATATTAATCGATCTATTTAGCTCGGATTATAAATGCAATGATCAAAAGAGTGAATTTTTCTCCATTCAGAAGCGGAGGGAGCTCGAGATGCGGGGTAGGGATAGCCTATAA

Protein sequence

MGENHDHHGTDSKPAKKSIKIDSILIDLFSSDYKCNDQKSEFFSIQKRRELEMRGRDSL

Homology

[Close]

BLAST of CmaCh05G005980.1 vs. TrEMBL
Match: A0A0A0LPT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G375180 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-07
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 1  MGENHDHHGTDSKPAKKSIKIDSILIDLFSSDYKCNDQKSEFFSIQ 47
          M EN+ H GTDS+PA+  ++IDSI IDLFSSD+ C+DQK E FSI+
Sbjct: 8  MEENNHHDGTDSRPARNFVQIDSIYIDLFSSDHICDDQKCELFSIR 53

[Close]

BLAST of CmaCh05G005980.1 vs. NCBI nr
Match: gi|778672077|ref|XP_011649739.1| (PREDICTED: protein EMBRYONIC FLOWER 1-like [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-07
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 1  MGENHDHHGTDSKPAKKSIKIDSILIDLFSSDYKCNDQKSEFFSIQ 47
          M EN+ H GTDS+PA+  ++IDSI IDLFSSD+ C+DQK E FSI+
Sbjct: 8  MEENNHHDGTDSRPARNFVQIDSIYIDLFSSDHICDDQKCELFSIR 53

[Close]

BLAST of CmaCh05G005980.1 vs. NCBI nr
Match: gi|659088526|ref|XP_008445028.1| (PREDICTED: protein EMBRYONIC FLOWER 1-like [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-07
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 1  MGENHDHHGTDSKPAKKSIKIDSILIDLFSSDYKCNDQKSEFFSIQ 47
          M EN+ H GTD++PA+K ++IDSI IDLFSSD+KC+ Q  E FSI+
Sbjct: 7  MEENNHHDGTDTRPARKFVQIDSIYIDLFSSDHKCDGQNCELFSIR 52

The following BLAST results are available for this feature:

BLAST of CmaCh05G005980.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh05G005980.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPT5_CUCSA	1.6e-07	63.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G375180 PE=4 SV=1	[more]

BLAST of CmaCh05G005980.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh05G005980.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778672077\|ref\|XP_011649739.1\|	2.4e-07	63.04	PREDICTED: protein EMBRYONIC FLOWER 1-like [Cucumis sativus]	[more]
gi\|659088526\|ref\|XP_008445028.1\|	4.0e-07	60.87	PREDICTED: protein EMBRYONIC FLOWER 1-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh05G005980	CmaCh05G005980	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh05G005980.1	CmaCh05G005980.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G005980.1.CDS.2	CmaCh05G005980.1.CDS.2	CDS
CmaCh05G005980.1.CDS.1	CmaCh05G005980.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G005980.1.exon.2	CmaCh05G005980.1.exon.2	exon
CmaCh05G005980.1.exon.1	CmaCh05G005980.1.exon.1	exon