CmaCh00G005200 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G005200
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionStAR-related lipid transfer protein 9, putative
LocationCma_Chr00 : 37842135 .. 37843714 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCACACGGGTTCTAAATCGTTGACGGCGACGGCGACAGAATGGGGAAAAGAGAAAGGCGAAAGCAGGGAAAGAGAGATGGTGGAGAACGGAGGAAGCGACGGTGGTAGTAACGCCCATTGGTGGTGGGCCTTGGCCGGCGCAACGCAGCTTGGTTGGGGTATCGCCTCTTTTCGGCGAGGAGTTATCGGCGATTCTAGCCTCATGCCCTTTAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGCTGCCTCCTCGTCCGCCATCGCTTCCTTAAAGGCCGCCGGCATCCACAAGGTTTACTTCACCTTCTTTCCTATTCTGCATCTAGTAGTTTCATTTCTTCTCCCTCCCTCCCCCTGATTTGGATTGCGTTAGAGGTTAATTGCGCAACTCTGATTAAGTTGGCTTTGAACTTGTGTCGTCCTCTGAAGAATTAACTCTCAAGCCAAATTTTATTCGTCGCATGTGGTGAATTTGGTTAATGTCTAGAAGGACATTTTGTTTAGTTTTTAACACTCAATTTGATCGAAACACTGAAACTGGAAACAATTGATCGAATCAGAATTGGCGTCCATTGATTAAGAAGAAAAATATTTTTGTAGGTTTTAGATTTTTAGGTTGTGTTGGATTCTTTGCAGCTGATATTAATAATCTTGCTGTTAATTTCGAGCATTTTCTCCCTTGGCTTGATATTGCTGTGAAATTCAGGTATATTCTTGATTGAATTTAGAAATTTTTTTACATGATTTGAGCATTGATGTCATGATAGAGTGAACTTATAAAAGAACTTAAGTAACGAGCATTGTTTTCATCCAATCTAATAATGGTTGCTGTTATTGGGTAGTGGAAGAGAAATTATTTTCAGATCAGTTTCAGTTCATTGCCTTTGTAGAAATTTTCTTACTGCGTTTGTAAATCACTATCAAAATGTGTTTAAGCAGTTTTCTGATTTCTTGTTGCTCTTATGGATGATCCGAATGAAGCCATTATTGTCATTCCTCACACAAAATCAGGGGCTTGATCTTGATTTGTGTAAGAAAAAGTATGTTTGTAGAAGAAATTCTTGCTGAAGTAAAGTGTATGAATACAAATTTGTGGGTTTGGTGTGTTGTGTTATATCAGGTTGAAGACGTGATGGAAGTAGGAGCTAATATCAGAAATGGTTTGGGGATTCGTCCAAGAACACGAGATGAATGAGTTTTTGTTTATACTGTTCATGAAATCTTGGATTTTGTGATTTAAAGTCTTGATCACGAGTCGAGTCGAGTCTTCGGCTCAGACTGCAATTCGGATGGTTAAAGATTCAAGAAGAGGCTCATTACTTTCTGTATCATCACTATAGTTGGGTATTTGTCTGAGTGTACTGAGTACTTGTGTATGTTCATAACCTTCCTTGAGTAATAATTTCTTCTTCATTTAGGAAACTTCCATCCTTCCTGGTGCTGATTTGTCAATCTTGTTTTTCCACTTTTTATTTTTCTTTCTTTTCCTGGTCATGCAAGTTAAATTTCTTGTAATGCATGAAAGATTTGAATGGGTTGCTTCATTATTTATATATTTAGTTACCTTTTCAA

mRNA sequence

ATGGTCCACACGGGTTCTAAATCGTTGACGGCGACGGCGACAGAATGGGGAAAAGAGAAAGGCGAAAGCAGGGAAAGAGAGATGGTGGAGAACGGAGGAAGCGACGGTGGTAGTAACGCCCATTGGTGGTGGGCCTTGGCCGGCGCAACGCAGCTTGGTTGGGGTATCGCCTCTTTTCGGCGAGGAGTTATCGGCGATTCTAGCCTCATGCCCTTTAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGCTGCCTCCTCGTCCGCCATCGCTTCCTTAAAGGCCGCCGGCATCCACAAGGTTGAAGACGTGATGGAAGTAGGAGCTAATATCAGAAATGGTTTGGGGATTCGTCCAAGAACACGAGATGAATGAGTTTTTGTTTATACTGTTCATGAAATCTTGGATTTTGTGATTTAAAGTCTTGATCACGAGTCGAGTCGAGTCTTCGGCTCAGACTGCAATTCGGATGGTTAAAGATTCAAGAAGAGGCTCATTACTTTCTGTATCATCACTATAGTTGGGTATTTGTCTGAGTGTACTGAGTACTTGTGTATGTTCATAACCTTCCTTGAGTAATAATTTCTTCTTCATTTAGGAAACTTCCATCCTTCCTGGTGCTGATTTGTCAATCTTGTTTTTCCACTTTTTATTTTTCTTTCTTTTCCTGGTCATGCAAGTTAAATTTCTTGTAATGCATGAAAGATTTGAATGGGTTGCTTCATTATTTATATATTTAGTTACCTTTTCAA

Coding sequence (CDS)

ATGGTCCACACGGGTTCTAAATCGTTGACGGCGACGGCGACAGAATGGGGAAAAGAGAAAGGCGAAAGCAGGGAAAGAGAGATGGTGGAGAACGGAGGAAGCGACGGTGGTAGTAACGCCCATTGGTGGTGGGCCTTGGCCGGCGCAACGCAGCTTGGTTGGGGTATCGCCTCTTTTCGGCGAGGAGTTATCGGCGATTCTAGCCTCATGCCCTTTAAGGCCTTCGCCGTTGCTTCGCTTTTCGTCGGCGCTGCCTCCTCGTCCGCCATCGCTTCCTTAAAGGCCGCCGGCATCCACAAGGTTGAAGACGTGATGGAAGTAGGAGCTAATATCAGAAATGGTTTGGGGATTCGTCCAAGAACACGAGATGAATGA

Protein sequence

MVHTGSKSLTATATEWGKEKGESREREMVENGGSDGGSNAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAASSSAIASLKAAGIHKVEDVMEVGANIRNGLGIRPRTRDE
Homology
[Close]
BLAST of CmaCh00G005200 vs. TrEMBL
Match: A0A0A0L700_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118070 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-36
Identity = 81/97 (83.51%), Postives = 86/97 (88.66%), Query Frame = 1 

Query: 28  MVENGGSDGGSNAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAASS 87
           M ENGGSD GSNAHWWWA AGA QLGWGIASFRRG IGDSS MP KAFAVASLFVGAA+S
Sbjct: 1   MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60

Query: 88  SAIASLKAAGIHKVEDVMEVGANIRNGLGIRPRTRDE 125
           S IASLKA+GIHKVEDVMEVGA IR+GLGIR R +D+
Sbjct: 61  STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 97

[Close]
BLAST of CmaCh00G005200 vs. TrEMBL
Match: F6GV86_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g02030 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.9e-27
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1 

Query: 29  VENGGSDGGSNAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAASSS 88
           +E  G   G  +HWWWALA A QLGWG+ S+RRG +GDSSLMP KAF VASLFVGAA+S+
Sbjct: 1   MEENGHGSGDGSHWWWALASAAQLGWGVFSYRRGGVGDSSLMPVKAFGVASLFVGAAASA 60

Query: 89  AIASLKAAGIHKVEDVMEVGANIRNGLGIRPR 121
           A   L A+GIHKVED+ E+GANIR GLG+RPR
Sbjct: 61  AFGVLHASGIHKVEDLKEMGANIRTGLGVRPR 92

[Close]
BLAST of CmaCh00G005200 vs. TrEMBL
Match: A0A0B0PN24_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12557 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.7e-26
Identity = 61/100 (61.00%), Postives = 81/100 (81.00%), Query Frame = 1 

Query: 27  EMVENGGSDGGS--NAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGA 86
           E  ENGG +G    N+HW+WA+A  +QLGW ++S+R+G  GD   MP KAFAVASLF+GA
Sbjct: 2   ETAENGGDNGKIHINSHWYWAIASVSQLGWAVSSYRKGYTGDHRFMPLKAFAVASLFLGA 61

Query: 87  ASSSAIASLKAAGIHKVEDVMEVGANIRNGLGIRPRTRDE 125
           ++S+++A LKA+GIHKVED+M VGA+IR+GLGIRPRT D+
Sbjct: 62  SASASVAFLKASGIHKVEDLMGVGASIRSGLGIRPRTGDK 101

[Close]
BLAST of CmaCh00G005200 vs. TrEMBL
Match: A0A0D2QYT2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G039500 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-25
Identity = 61/100 (61.00%), Postives = 80/100 (80.00%), Query Frame = 1 

Query: 27  EMVENGGSDGGS--NAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGA 86
           E  ENGG +     N+HW+WA+A  +QLGW ++S+RRG  GD   MP KAFAVASLF+GA
Sbjct: 2   ETAENGGDNDKILINSHWYWAIASVSQLGWAVSSYRRGYTGDHRFMPLKAFAVASLFLGA 61

Query: 87  ASSSAIASLKAAGIHKVEDVMEVGANIRNGLGIRPRTRDE 125
           ++S+++A LKA+GIHKVED+M VGA+IR+GLGIRPRT D+
Sbjct: 62  SASASVAFLKASGIHKVEDLMGVGASIRSGLGIRPRTGDK 101

[Close]
BLAST of CmaCh00G005200 vs. TrEMBL
Match: M5VSJ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013770mg PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.8e-25
Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 1 

Query: 24  REREMVENGGSDG--GSNAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLF 83
           +E E +E+GGS G  GS AH WWA A A QLGW + S RRG  G+S+ MPFKAFAVASL+
Sbjct: 2   QEEETLESGGSGGRGGSRAHLWWAGASAAQLGWAVVSSRRGCAGNSTTMPFKAFAVASLY 61

Query: 84  VGAASSSAIASLKAAGIHKVEDVMEVGANIRNGLGIRPRTRDE 125
           VG+ +++ +A L+A+GI KVED++E+GANIR GLG+  RTRDE
Sbjct: 62  VGSIATAGVAGLQASGIRKVEDLVELGANIRTGLGVHRRTRDE 104

[Close]
BLAST of CmaCh00G005200 vs. TAIR10
Match: AT3G60480.1 (AT3G60480.1 unknown protein)

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-21
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 1 

Query: 30  ENGGSDGGSNA------HWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVG 89
           +N G+  G ++      HWWWAL    Q+ WGI   RRG  GD  LMP KAF VASLFVG
Sbjct: 4   QNAGTGAGESSLLDGSGHWWWALGSGAQIMWGIRLIRRGYAGDVRLMPLKAFGVASLFVG 63

Query: 90  AASSSAIASLKAAGIHKVEDVMEVGANIRNGLGIRPRTRDE 125
           + ++S++A ++A GIH V+D +++GANIR  LG+ P+  D+
Sbjct: 64  SLATSSVALVRATGIHTVQDAIDLGANIRTNLGVTPQIPDK 104

[Close]
BLAST of CmaCh00G005200 vs. NCBI nr
Match: gi|659074821|ref|XP_008437814.1| (PREDICTED: uncharacterized protein LOC103483131 [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 3.8e-39
Identity = 86/107 (80.37%), Postives = 93/107 (86.92%), Query Frame = 1 

Query: 18  KEKGESREREMVENGGSDGGSNAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAV 77
           KE     E+EM ENGGSDGGSNAHWWWA AGA QLGWGIASFRRG +GDSS MP KAFAV
Sbjct: 19  KESNAKAEKEMEENGGSDGGSNAHWWWAFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAV 78

Query: 78  ASLFVGAASSSAIASLKAAGIHKVEDVMEVGANIRNGLGIRPRTRDE 125
           ASLFVGAA+SSAIASLKA+GIHKVEDVMEVGA IR+GLGIR R +D+
Sbjct: 79  ASLFVGAAASSAIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 125

[Close]
BLAST of CmaCh00G005200 vs. NCBI nr
Match: gi|449431982|ref|XP_004133779.1| (PREDICTED: uncharacterized protein LOC101221895 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 3.0e-36
Identity = 81/97 (83.51%), Postives = 86/97 (88.66%), Query Frame = 1 

Query: 28  MVENGGSDGGSNAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAASS 87
           M ENGGSD GSNAHWWWA AGA QLGWGIASFRRG IGDSS MP KAFAVASLFVGAA+S
Sbjct: 1   MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60

Query: 88  SAIASLKAAGIHKVEDVMEVGANIRNGLGIRPRTRDE 125
           S IASLKA+GIHKVEDVMEVGA IR+GLGIR R +D+
Sbjct: 61  STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 97

[Close]
BLAST of CmaCh00G005200 vs. NCBI nr
Match: gi|1009140453|ref|XP_015887660.1| (PREDICTED: uncharacterized protein LOC107422691 [Ziziphus jujuba])

HSP 1 Score: 140.6 bits (353), Expect = 1.9e-30
Identity = 70/104 (67.31%), Postives = 85/104 (81.73%), Query Frame = 1 

Query: 25  EREMVENGGSDGG----SNAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASL 84
           E E+V+  G++GG    S +HWWW +A A QLGWGI S RRG  G S+LMPFKAF VASL
Sbjct: 4   EEEVVDVDGNEGGGGVGSESHWWWGMASAAQLGWGIVSLRRGYTGHSNLMPFKAFTVASL 63

Query: 85  FVGAASSSAIASLKAAGIHKVEDVMEVGANIRNGLGIRPRTRDE 125
           FVG+A+S+++ASL A+GIHKVED+MEVGANIR GLGIRPRTR+E
Sbjct: 64  FVGSAASASVASLHASGIHKVEDLMEVGANIRTGLGIRPRTREE 107

[Close]
BLAST of CmaCh00G005200 vs. NCBI nr
Match: gi|225453438|ref|XP_002275512.1| (PREDICTED: uncharacterized protein LOC100266789 [Vitis vinifera])

HSP 1 Score: 129.0 bits (323), Expect = 5.6e-27
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1 

Query: 29  VENGGSDGGSNAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAASSS 88
           +E  G   G  +HWWWALA A QLGWG+ S+RRG +GDSSLMP KAF VASLFVGAA+S+
Sbjct: 1   MEENGHGSGDGSHWWWALASAAQLGWGVFSYRRGGVGDSSLMPVKAFGVASLFVGAAASA 60

Query: 89  AIASLKAAGIHKVEDVMEVGANIRNGLGIRPR 121
           A   L A+GIHKVED+ E+GANIR GLG+RPR
Sbjct: 61  AFGVLHASGIHKVEDLKEMGANIRTGLGVRPR 92

[Close]
BLAST of CmaCh00G005200 vs. NCBI nr
Match: gi|728848410|gb|KHG27853.1| (hypothetical protein F383_12557 [Gossypium arboreum])

HSP 1 Score: 125.2 bits (313), Expect = 8.1e-26
Identity = 61/100 (61.00%), Postives = 81/100 (81.00%), Query Frame = 1 

Query: 27  EMVENGGSDGGS--NAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGA 86
           E  ENGG +G    N+HW+WA+A  +QLGW ++S+R+G  GD   MP KAFAVASLF+GA
Sbjct: 2   ETAENGGDNGKIHINSHWYWAIASVSQLGWAVSSYRKGYTGDHRFMPLKAFAVASLFLGA 61

Query: 87  ASSSAIASLKAAGIHKVEDVMEVGANIRNGLGIRPRTRDE 125
           ++S+++A LKA+GIHKVED+M VGA+IR+GLGIRPRT D+
Sbjct: 62  SASASVAFLKASGIHKVEDLMGVGASIRSGLGIRPRTGDK 101

The following BLAST results are available for this feature:
BLAST of CmaCh00G005200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G005200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L700_CUCSA2.1e-3683.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118070 PE=4 SV=1[more]
F6GV86_VITVI3.9e-2767.39Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g02030 PE=4 SV=... [more]
A0A0B0PN24_GOSAR5.7e-2661.00Uncharacterized protein OS=Gossypium arboreum GN=F383_12557 PE=4 SV=1[more]
A0A0D2QYT2_GOSRA1.6e-2561.00Uncharacterized protein OS=Gossypium raimondii GN=B456_004G039500 PE=4 SV=1[more]
M5VSJ5_PRUPE4.8e-2560.19Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013770mg PE=4 SV=1[more]
BLAST of CmaCh00G005200 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G60480.12.9e-2147.52 unknown protein[more]
BLAST of CmaCh00G005200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074821|ref|XP_008437814.1|3.8e-3980.37PREDICTED: uncharacterized protein LOC103483131 [Cucumis melo][more]
gi|449431982|ref|XP_004133779.1|3.0e-3683.51PREDICTED: uncharacterized protein LOC101221895 [Cucumis sativus][more]
gi|1009140453|ref|XP_015887660.1|1.9e-3067.31PREDICTED: uncharacterized protein LOC107422691 [Ziziphus jujuba][more]
gi|225453438|ref|XP_002275512.1|5.6e-2767.39PREDICTED: uncharacterized protein LOC100266789 [Vitis vinifera][more]
gi|728848410|gb|KHG27853.1|8.1e-2661.00hypothetical protein F383_12557 [Gossypium arboreum][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G005200.1CmaCh00G005200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh00G005200Cucsa.259720Cucumber (Gy14) v1cgycmaB0707
CmaCh00G005200Csa3G118070Cucumber (Chinese Long) v2cmacuB004
CmaCh00G005200CSPI03G07420Wild cucumber (PI 183967)cmacpiB004
CmaCh00G005200CmoCh06G010030Cucurbita moschata (Rifu)cmacmoB017
CmaCh00G005200Cp4.1LG08g00520Cucurbita pepo (Zucchini)cmacpeB023
CmaCh00G005200Cla97C05G080360Watermelon (97103) v2cmawmbB007
CmaCh00G005200CsGy3G007550Cucumber (Gy14) v2cgybcmaB280
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G005200Cucurbita maxima (Rimu)cmacmaB015
CmaCh00G005200Cucurbita moschata (Rifu)cmacmoB012
CmaCh00G005200Cucumber (Gy14) v2cgybcmaB275
CmaCh00G005200Melon (DHL92) v3.6.1cmamedB002
CmaCh00G005200Silver-seed gourdcarcmaB0323
CmaCh00G005200Cucumber (Chinese Long) v3cmacucB0002
CmaCh00G005200Watermelon (97103) v2cmawmbB002