Cucsa.375320.2 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAGCTCATTACATAGTTGAAAGTCCCTTCGTGGACTTGATTTTTATATGTTCTTGTATTCTTTTATTTCTTTGTTAATGAAAACAGTTGTTTCTATCCTTGAAGAAAACTCCTTGTTCTTCACTCTTTTCTATCTGTGCACTGACCATTGCCAAGCATTTTTAGTATCTGCACCTGCATCGATCCTCATTATTTGTCCTGAATTTGTTGAAGAAGATGTTTCTGATGCTTTCTATTTCTAGACTCATGCTATCAATAAAAACACGAGAGAAGTGAGATTCTGCTTTCTTTCTGATTGTTACACTTCAGTTATTTTCAGGAAAAACCACCTGCAATGAGATTCCATCCTTTGATTCGTGAGTGCTGCCTTTTAAGTTCAGTTGGGAACAAATTATTATGAAGTAATAGTAAATATTTTTTGAACTCCTGCATTTCACTCGCTTTTGTCTTTGTTCTTTGAATCAGCTATCAACCAACAATGACTGTGGAAGGGATGCATGTCAAAGTTGTTGACCCAAACACTCGAAAAAACTGTTTGAGTGGATACACTTTTTTACTAGGCAACGCACAGTCGGTAATGCTATATGTTTCAATTTCAGTCTGTCTTTTCATTTTCACATTTTCTGAGAGTTGCTGGACAATCCTCTAATGAATGAATTATAAAATAAATTAGCTTTATTTATAATTCATTCATCTTCCATTGTTTATGGCAAGTCTCACTGTTTTTGAGCGTTTTGCACACTTGAAGGCGTCTACTTATTCAACATATCTGCCTTAACCAGAATGCCTTTATCTCTCATGGAACTTAAGTCTTATCCAAGATACTTGGACGCAAGTGGTGTTTAGTACTATTCCTTAGGTTTCTGTCTGCTTATTTTTGGAACTTAAGAAATAAATGTGAGGCTACTGGTTGGGGATACAGGATATTGTGGAAATGGTAGTTGGTTATTGGTAAGGGACTAAGGGTATGGTGGTTATTAGTTAGGGAGGTGTTGTAGAGTTTAGGATATAAATAGAGAGTGGGGGAAATTTGGGTTGGGAGAGGTCTCAAGAGAGAGGGTGGGAGGGGGTGGAAGTGCCTCGAATTACTTGTTTATCTCTTAGGTGGGAGAGAGAAAAAAAAGTAATTTCTTTCATTCCAGATTGATGCAATTATTGTATAATAGAGGAGGCAACATATATATAGATTACAAGGGTAATTAAATCTTAACCACCTAACTCCGGACATTCTCTTATAATATATGTTTGCTCGTAAACCATATAATCTAAACAATTCCAACAACTTCAAACTAAAACTAATTCAATAGTAGCGATGCAAGAAAGTTGTTTTCTGTCATGTTGGGTCTGGACAGTTATTAGAAGTTGTATGTTTGTGTTTGGTATCCAGATTAGGATTTAAGTGAAGTAGCTAGCTACCTACCTATGAGAAAACCATCTTATGCTTTGTTTTGTGTGGGGGGAGTTCAAACCTCTCTAATATATGGGTTGCATGGAACTTTCCTGAATGTTTGTGAATAATCTCTAAAGTCTCAACTAGGCAGTCTTTATCTCTCAACCAGCACCCTAGGCCCTGTTCTGTTTTGGTGACATTGTTTTGCATTTTGACAGCTTCGTTTTCCCCTCTCTGGCCAGCCTTCTTTGGAGCATAACTTATATTTTCTTTGGGTCTAGTTTACACAGTAGCAGCTTTTGCTTTTGTTTACAGGTTCAGCCTTTGTACTGCTTTGTTTGCCTCATTTCCTTTTCTTTATTTTTCTTTATTTCTCTGTCTCAGCTTCTGTATTAGGCTGGATTATGTCTCCATTGTACTTTGGCATTTTTTATTTCTAGCTTTAATTGGGATTGTTTTGATGCTAAGAGGTGTCAACCTAGTTGAGATGTCTGGATGCACCTTCTGATCCCCCGCTTATTGCTTTCTAGGCTTCTTTATTACGCTCATTGTATAACTCTCTTGTACTTTGAGTTATTGTTAATAAAGTAGTTTGTCTCCGTTTCAAAAAAATCTCTGAAGTTGAGTTCTTATTAAAAAAGAATCTTTTGTCTCCGTTTCAAAAAAAAAAAAACTGAAATCTGAATTTTCTGTTTCGTATTTCTAGTTTTTGACATTCATTTTTCTAAAATTTAGCAGTACAAGTATGGGGATCGGTTGAAGATGTTATTACAACAAGTTGGTGGTGCGAATGTTTTGTCTATTGAGGACTTCTCTTCAGATAGCCAAGTATGAGGCTCTACCTCTTCTCACCTATACTGTATCCATCTTTTCCTAATTTCTTCTGAAGGCGTGGATAAACACTTTTATTTGACAATTTCATGTAAAATAATCTAAGTCACATTATTTCTAATAGCAATGTGGGAATTTTTCTAGTACTACGGAAGTACTCTACTCCCTTTGTTCACTCTATAAATTGGTCTTCATAAAACATCAACATATGCATAACATTTTTACTCATGAATTAGTAATTGTGTTCCAAACGGTAATGCTTCAGTTGTTAACAGTGTTTGGAAATATGTTCCAAATGGTGCTCTATGTAGTCTGTGATTAGAAAAAATATAACGGGTTGAAGTCTTTATTCCATTTCTTTTGTTTATCTCAATTCTGTGAACTTGGTGTTTGTTGGGCATTGATTTGCATGATAACTTTTGTAGGATTTGGGTAATGGAGAAAATGATCGTGTAGTATTCGTTATGCCTGGAGGATCAGTTGAAAAGTTGGATTCATCCTTTAAGGTTGATTCGTATTATAAAATAACTGAGTTGATTTTGATATCTTCTGTTTTGAGTGGAACACTAGACAGAGACAATTTGATACATCCCTGTGGTAAGCAGTCTTCTTCACTGCTACTTTCTCTAGTAGTATATTTTTCTAGTGATAATTGATAAGTTACGGTTGATTTCTCGATTTTAACTTCATTTGTCTAGCTGAATGTAGAGTTTCCTTGCAGAACCTGGTTCCTCTACATGCTCCACTGACGAGACTGTGGTAGCAGAATCCGATCTTGAAACAGAAACAAGTAAACCAGCTGTTTCTAATGTCCAAGGGCCAGATGCATATGTAAGCAAATCAGATGAATATTTAAGTAGACCACTGATTTCTGTTGACAATGCTACTACTGGATCAGTGGGTGGCCATGAAACAGTAAAAAATAGTTGCAGTGATATCGAGATGAGAAAGGACAAGATCGATGAATCCGACAGCAGAAATATAGACATAATATTCAGCCAAAATTTAATTGTGCAGCATGCCACGAAACCCTCCACTTTAGTAACTGCAGAAAACAATGGGATTAACTTCAAACGATTCAGAAAAGTATTGCTCTTTGCCTTTGAACGTCTTTTCCTGCATCATTCCATTTTAAATGGTGTGCAAATTATTGCTTCATGTTGATGAGATCTCAGCCATTATATATTTTTGCTCATCTTGAATGATGATCGTGATCATGTTGGCATTCAACTGTCAGTATGTTGGTTTAGGAATCAGTGGAAACAGATACTTTTGCCTCAAATATGCTTAGCAATGAAAACTTTCTTGTGTCGGTTGGCATATGGAGGAAAATATTATGGAAGTTGGTACTCATCACTCATGTCCTTAAAACTTTTTTGCAGACACAAACTCACTCTGGGAATAGCTTTAACAATCTTGTCCCATTTGATAAGTATCCTTACAAGTAAGTGTTTCTCTTGCTCTCTTTCTTTCTTTCTTTCCCCCTTTGAAGTGTTTTAAGATGTCACTAGATTTATTGCCTTTTTGTGGCTTTTTTTGGCCAAGCTTGATTGTTTTGGATTGAGGTCCCCTTTTCTTTGATGGTATCATCTAACATTTTCTTATGACTTTGTAGGGATAATGGTGATGGGAGGGAGGAAATTGCAGAGTCCTTGAAAGAAGAAAGAAGGCGGAAGGAAACAGAAGCTATAGCCGAAGATCTATTTCATAATGAGAAGGTGAGTCTTTTCTAACTTTAGCATCATAAGTTAATAGACAAGGAATACTTTAGGCTTGGGACATAAGTTTTTAACTTGATCAAATTTCAGGGACGGCGACGTGGAATGGCGGGTTCTCTTCAAGAGCTTTTTACTCGTTCTTAAAAGCAAATATTTAGGTTT tagctcattacatagttgaaagtcccttcgtggacttgatttttatatgttcttgtattcttttatttctttgttaatgaaaacagttgtttctatCCTTGAAGAAAACTCCTTGTTCTTCACTCTTTTCTATCTGTGCACTGACCATTGCCAAGCATTTTTAGTATCTGCACCTGCATCGATCCTCATTATTTGTCCTGAATTTGTTGAAGAAGATGTTTCTGATGCTTTCTATTTCTAGACTCATGCTATCAATAAAAACACGAGAGAAGTGAGATTCTGCTTTCTTTCTGATTGTTACACTTCAGTTATTTTCAGGAAAAACCACCTGCAATGAGATTCCATCCTTTGATTCCTATCAACCAACAATGACTGTGGAAGGGATGCATGTCAAAGTTGTTGACCCAAACACTCGAAAAAACTGTTTGAGTGGATACACTTTTTTACTAGGCAACGCACAGTCGGATTTGGGTAATGGAGAAAATGATCGTGTAGTATTCGTTATGCCTGGAGGATCAGTTGAAAAGTTGGATTCATCCTTTAAGGTTGATTCGTATTATAAAATAACTGAGTTGATTTTGATATCTTCTGTTTTGAGTGGAACACTAGACAGAGACAATTTGATACATCCCTGTGAACCTGGTTCCTCTACATGCTCCACTGACGAGACTGTGGTAGCAGAATCCGATCTTGAAACAGAAACAAGTAAACCAGCTGTTTCTAATGTCCAAGGGCCAGATGCATATGTAAGCAAATCAGATGAATATTTAAGTAGACCACTGATTTCTGTTGACAATGCTACTACTGGATCAGTGGGTGGCCATGAAACAGTAAAAAATAGTTGCAGTGATATCGAGATGAGAAAGGACAAGATCGATGAATCCGACAGCAGAAATATAGACATAATATTCAGCCAAAATTTAATTGTGCAGCATGCCACGAAACCCTCCACTTTAGTAACTGCAGAAAACAATGGGATTAACTTCAAACGATTCAGAAAAACACAAACTCACTCTGGGAATAGCTTTAACAATCTTGTCCCATTTGATAAGTATCCTTACAAGGATAATGGTGATGGGAGGGAGGAAATTGCAGAGTCCTTGAAAGAAGAAAGAAGGCGGAAGGAAACAGAAGCTATAGCCGAAGATCTATTTCATAATGAGAAGGGACGGCGACGTGGAATGGCGGGTTCTCTTCAAGAGCTTTTTACTCGTTCTTAAAAGCAAATATTTAGGTTT ATGACTGTGGAAGGGATGCATGTCAAAGTTGTTGACCCAAACACTCGAAAAAACTGTTTGAGTGGATACACTTTTTTACTAGGCAACGCACAGTCGGATTTGGGTAATGGAGAAAATGATCGTGTAGTATTCGTTATGCCTGGAGGATCAGTTGAAAAGTTGGATTCATCCTTTAAGGTTGATTCGTATTATAAAATAACTGAGTTGATTTTGATATCTTCTGTTTTGAGTGGAACACTAGACAGAGACAATTTGATACATCCCTGTGAACCTGGTTCCTCTACATGCTCCACTGACGAGACTGTGGTAGCAGAATCCGATCTTGAAACAGAAACAAGTAAACCAGCTGTTTCTAATGTCCAAGGGCCAGATGCATATGTAAGCAAATCAGATGAATATTTAAGTAGACCACTGATTTCTGTTGACAATGCTACTACTGGATCAGTGGGTGGCCATGAAACAGTAAAAAATAGTTGCAGTGATATCGAGATGAGAAAGGACAAGATCGATGAATCCGACAGCAGAAATATAGACATAATATTCAGCCAAAATTTAATTGTGCAGCATGCCACGAAACCCTCCACTTTAGTAACTGCAGAAAACAATGGGATTAACTTCAAACGATTCAGAAAAACACAAACTCACTCTGGGAATAGCTTTAACAATCTTGTCCCATTTGATAAGTATCCTTACAAGGATAATGGTGATGGGAGGGAGGAAATTGCAGAGTCCTTGAAAGAAGAAAGAAGGCGGAAGGAAACAGAAGCTATAGCCGAAGATCTATTTCATAATGAGAAGGGACGGCGACGTGGAATGGCGGGTTCTCTTCAAGAGCTTTTTACTCGTTCTTAA MTVEGMHVKVVDPNTRKNCLSGYTFLLGNAQSDLGNGENDRVVFVMPGGSVEKLDSSFKVDSYYKITELILISSVLSGTLDRDNLIHPCEPGSSTCSTDETVVAESDLETETSKPAVSNVQGPDAYVSKSDEYLSRPLISVDNATTGSVGGHETVKNSCSDIEMRKDKIDESDSRNIDIIFSQNLIVQHATKPSTLVTAENNGINFKRFRKTQTHSGNSFNNLVPFDKYPYKDNGDGREEIAESLKEERRRKETEAIAEDLFHNEKGRRRGMAGSLQELFTRS*
BLAST of Cucsa.375320.2 vs. Swiss-Prot
Match: NBS1_ARATH (Nijmegen breakage syndrome 1 protein OS=Arabidopsis thaliana GN=NBS1 PE=1 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 2.0e-35 Identity = 103/328 (31.40%), Postives = 163/328 (49.70%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. Swiss-Prot
Match: NBS1_ORYSJ (Nijmegen breakage syndrome 1 protein OS=Oryza sativa subsp. japonica GN=NBS1 PE=1 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 1.5e-30 Identity = 93/340 (27.35%), Postives = 167/340 (49.12%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. Swiss-Prot
Match: NBS1_ORYSI (Nijmegen breakage syndrome 1 protein OS=Oryza sativa subsp. indica GN=NBS1 PE=2 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 7.6e-19 Identity = 44/110 (40.00%), Postives = 73/110 (66.36%), Query Frame = 1
HSP 2 Score: 68.2 bits (165), Expect = 1.7e-10 Identity = 41/142 (28.87%), Postives = 74/142 (52.11%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. TrEMBL
Match: A0A0A0LA01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G308200 PE=4 SV=1) HSP 1 Score: 545.8 bits (1405), Expect = 3.1e-152 Identity = 281/313 (89.78%), Postives = 282/313 (90.10%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. TrEMBL
Match: A0A067K4W4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21011 PE=4 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 3.3e-53 Identity = 130/316 (41.14%), Postives = 185/316 (58.54%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. TrEMBL
Match: B9SIQ5_RICCO (Nibrin, putative OS=Ricinus communis GN=RCOM_0538810 PE=4 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 7.3e-53 Identity = 137/317 (43.22%), Postives = 188/317 (59.31%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. TrEMBL
Match: B9IDC7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12710g PE=4 SV=2) HSP 1 Score: 211.8 bits (538), Expect = 1.1e-51 Identity = 133/318 (41.82%), Postives = 182/318 (57.23%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. TrEMBL
Match: M5W7W1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004302mg PE=4 SV=1) HSP 1 Score: 209.1 bits (531), Expect = 6.8e-51 Identity = 132/312 (42.31%), Postives = 177/312 (56.73%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. TAIR10
Match: AT3G02680.1 (AT3G02680.1 nijmegen breakage syndrome 1) HSP 1 Score: 151.0 bits (380), Expect = 1.1e-36 Identity = 103/328 (31.40%), Postives = 163/328 (49.70%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. NCBI nr
Match: gi|449456249|ref|XP_004145862.1| (PREDICTED: nijmegen breakage syndrome 1 protein isoform X2 [Cucumis sativus]) HSP 1 Score: 545.8 bits (1405), Expect = 4.4e-152 Identity = 281/313 (89.78%), Postives = 282/313 (90.10%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. NCBI nr
Match: gi|700202671|gb|KGN57804.1| (hypothetical protein Csa_3G308200 [Cucumis sativus]) HSP 1 Score: 545.8 bits (1405), Expect = 4.4e-152 Identity = 281/313 (89.78%), Postives = 282/313 (90.10%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. NCBI nr
Match: gi|778680802|ref|XP_011651398.1| (PREDICTED: nijmegen breakage syndrome 1 protein isoform X1 [Cucumis sativus]) HSP 1 Score: 545.4 bits (1404), Expect = 5.8e-152 Identity = 281/314 (89.49%), Postives = 282/314 (89.81%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. NCBI nr
Match: gi|659114408|ref|XP_008457038.1| (PREDICTED: uncharacterized protein LOC103496815 isoform X2 [Cucumis melo]) HSP 1 Score: 505.8 bits (1301), Expect = 5.1e-140 Identity = 264/314 (84.08%), Postives = 272/314 (86.62%), Query Frame = 1
BLAST of Cucsa.375320.2 vs. NCBI nr
Match: gi|659114412|ref|XP_008457040.1| (PREDICTED: uncharacterized protein LOC103496815 isoform X4 [Cucumis melo]) HSP 1 Score: 505.4 bits (1300), Expect = 6.6e-140 Identity = 264/315 (83.81%), Postives = 272/315 (86.35%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
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