Cucsa.365920.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAATAAATTACTTCATCGGTAAGATCAACAAATCAGCACCGTGAAGGCATTCCAAGAAACGCGCCTCAGGTTTGAACTTCGAAGTCACAATCATACTCTTTCTACATCAAATTTTGATTAACACTTTGGCAATTTAGAAGGTTTTGATTCATAATATGGACGGCCCTCCTGTGGGCGATATCTGTTCAATCTGCCATGGAAGATTCAACATCCCTTGTCAAGCAAATTGTTCGCACTGGTTCTGCGGTTGATTCTCTTTCTTCAATTCATTTTCTCTTTTGATGCTGCCTTTTTTTTTtCTTTTTAAATTTTTATAATTTAATCTCTCTTTGAATGATTCTGTTCCTCCATTTCATTTTCGTATTTCATTTCTTTGCAACTGTCGACTAGGTTTGTTTCTTGGAATTTGGAATCTGGTTGCTGTTTTTtCCTTTGTCCTGATTAGTCACATTAATCACGGCTTAGTTATCCGATATCGTGAATTGTAGTCTCTTCGAGCTATTTTTTACCGATGGACAAGTCTTGGATGAAATTTCTGTTTCTTGGTAACGTGTTCTCGAACCTCTGCATCTCAACAAATGGTCAAATGAAACTAAAATCTGAAACAGAGGCTGAGATTGAATTGCATCTCTTTGAGATTATTTGCTTCCAGCTGGAAATAACTGCCTAAATGATTGAGGGTGGTCACTGGAGTTAATCCTGTACAATTAAGAGAGAGTTCATCTAGTTTTTGGATCAGAGAAGGAACTTCGTGGTTTCATTTTCAACTTTAGGAACTTGTTGTATAAGAAATGCATTAAATCATGAGATGTGCATGAACATTTTTAATGTTGGAAGACAAAGTTCTGCTTGCTAGTTGTATTAATATCCCTTTTATGAGATTTGTTTGTAAAATATTTAAACAAAAGAAAAaGAAATGTTCATCTATGAAGCTCACTGCATTGTCTGCTTCCCTATATGTAGGCAAGTGTATAATGCTTGTCTGGGATCATGGATCACCACTACACCCATGCAAATGCCCCTTATGTCGTCGTTCAATCACTTTATTAGTTCCTTCGGAGGTTTCACCAATTCAACAAAGTGACCCAGAGGTTGCACGGGTTCTTAACAATATTAGGACTTATAACCGTCATTTCGGTGGCAACTCAACTGATTTAAGTCAGGTATTTCTCTTTTTTACATAATTTCTCTGATGAACTGCTAGTTAAAAGTGATTGTTGAATATTCTTTGGAACATGAAAAAGGATTTTCCATGAAGAATTGACCATAGAGAGTGAGCATTGATTTGCTAGGGCAGGAAGAAGGCAGGAAGCATTATTCCATGTCCAGTGAGAACAATTAGGACCAAGAAACTGAAGTTAATGGCCTAAATATGTCTCCTCGTATGAGAAGATAATGATAGTTTCATCAACAAACTGAACGTAGGAATTAGGAAATGGACATTGGACATAGCATGCCGATCATTCCCCAATTCAAAGCCTTTAGTCTAAGTTCTGTTTTCAGCAAGATTCAACGTTCTACTAAGGCAATTCAACACAAGAATAGTGAATAAAAAGGAAGGGGATAATGGGGCACCATGCCCAAGCTAACACTCTTCTCCACAAAGGCTACTACCTGAATTCCTCCTAACACACCATCATTCCCTGCCACATGTACTCTCAAATCATGTCCCACTTCTCTAACTAACCATCAGGTGTACCAGTTCCCTTTCTGCCCTTCCTACTATAAGTTTTTGTCACTTGGGGCTTCACATTTTTCCTTTGATGATAATGGATAAATTAGCTGAAGAGAGACAGCCTATAATTTACTAGAATATTGTTGACAATGTTCTAATCAGCTTTATTACAATCCTTCTTTTTTTTTGTGCTTCCACTCATCAATTAATTCATATGCAATAAGAGATGCATTGATTTGATGACCGATTGCAAAAATGGATTGATTttCTGTGATGGTGGATGGAAGAACTTGTTTAGTCTCTCTGATAAATCTCTAGGAATGATCTTATAGAGAAAAGTGGTGAGGCGAATGGCCTAAACCTACTGATTTGGCATCAGTCTTTTTGGGGATGAGGCAGAGGCAAGTTTTGTTGAGGCTAGCATTGGTAATATCATTCTCAGAAAAATCATTGAACACCCTCTTGATGCCATCCTTGAAAGTGTTCCAGGAGATTTTTTATTGAACAAATCGTAAAATGAATTTTCTAGTCTGAGAAAGGGAGTTCTAGCATCGTGCTTGTAATGAGGCAGCAATTAATGGAATGTGGCAGAAATCTGTTACCAACTTTTTGAGAACAAAGTTGGTAGTAAAAATCAACAAAAGACTTTTACAAACTCAGCTTCTATGTCACTGACAGCAAGGACACTAACCGTTCTGTGAGGGCATGTTTGGCTCAAGGAGTTTGAAAGTAGGAGTTGAGAAGTAGGGATTTTTGAACACCACTCCTTGTTTGGTCCCAGGAGTTTGTGAGTCTCACCACTAAAAGACATCAATTTTATACATTATCAACTCCTTACATAGTGCGCTCTAGGAGTTCACAACTCCGTAAACTTCATAACTCTTTACTTCTCAATATTCAACTCTTTACCTGAAACACCCCCTAGAGGATTTCAACGGTTGTGTTCTTTCTATATTTTGCAACAATAAGACAATGGAAGAATGAAATTTCATCACCATCAGCTTGCCAATTGGATTTACAGTGCTGTCTCTGCATAATCTCTTCATTTGCAGCAATGGGGAAATTGTCAGATCTAGTAGCTATGCGCCTGTGGATGGAATAATATCTAAAGGCCCATTTTCCTCATTTGGGTCAATGACTTATTATGCACTATCTGAAGCTGACTTTTGTAGTTAGAGTCAGTGGATGAATTCCAGTCCGTGAGAGATAATTTCAGGCATTTCAATCTCTGCATAAAACCACGACCCATCCAACCCACCATGCTGTTTTTGGTTCACCAATGAAACATCAGAACAGAATCATGATATGTTTCAGCCACGTATTAGCAAATTTGAATGAAGTAGGACCCCCTTTCTCTTCTCCAGCCTATGGGTAAATGGGAAAACTTTTTTAGGCAATTTGTTCCAGCCTTTAACCGATAGAAAGTCAAATTTAGATAAGATTCCATCCAAAATGAGAAATTTATCAATAAAGGTGTCGGAACCAAATTCTCTGCTACTGTACCATGTGAGAGGACTGTTTTGCAGTGGCAGTAAAGTGATTAATAGGATACTGATAGAACACCACTTCCTAACAAGAACCGAAATTTGAAATATATTGAGAATTAATGAAGAACTACAATATGATCCAAGTTTATGGTACTTGGGACCCCCTCTCTTGAGAATACTACTCAACCACCTCCCCcTTCTTCACTCACCCACTTCTTATTTGTAACCACTGCTATTAGTAACTGCCTAAATATCTAATTACCCTTATACCCCTAACCCATACTAATCTAGGTATCTAACAAATACATGGCTCTACAAATCCACTCCCCTTTACTATCAACATTAAAGTCTTCACTGAGGATCTAGTTATTGCCACAGGTACGATAAAACATAAAGCTCTTGCCAATAAGAAACATGGTTAGATGATGAAGATGGGCCATAAATACCCGATGACCAAAAGCTAAAATCATCAGCCAGATTGATGCGTAGGGAAAGGGTTTATGCACCTTCAATAGCATCCAAAACACCCAAAGATGGATCATTCCAAAGGATGAGAATACCACCAAAGAGCTTACAACATTTAGTGGAAGACCAACCACATCCTTAGAATTCCAAAGTGACTTAATGAATCTCTTATTGATAGAGGATTATTTAGTTTCCTGTAAAATCAAATCACAAAAACACAAATTCCCTTCTAGCCTGGATCTGATTTTTTAGAACCTTAAGGGGCCGTTTCTTTTGTGGGTAAAGAAGGTGGGAATAGGTATGGGCTTACAAAGGTTGATGGATATATTTTTTTtACCTTGGAAAAGATATTTCCCAGGGTTTATTATTCAACACAAGTGGAGGATTTCCAATGCCCTTGAGAAGGGAAGGTTTGCAATTCCTTCCCTCAAACTCAGGGTGATATCGGGGCAACTTTGCCCTAAGTTTCAAAATCTAAATCATTTTGTTTTTCAACTTGTGGCATCTCGGAGGAACTTTTGTCCAAAGTTTTAAAATCTAAATCCTTCTATTTTCATTATGGGGCATCTCGAGGCAACTTTGCCCTAGGTTTTAGAACATTTTCCTTTTGTTATTTCATTTCGGGACATTTCAGGGAAACTTTGCCCCGAGTTTTAAAATCTAAATCCTTCTGTTTTTCATCTCGAGGCATCTCATAGGAAATTTGGCTCGAGTTTGTCCCTTGACTATTTATTTTTTATTATTTATTTATTCCCATACATTCTTAATACCATTTCCATGCACAACCAAACACAAACATCTTTAATTCCCAGCAATCTAATTCTCAGACTTGTTATTCTCAGGCATCATTAATTCTCTGTAATGTTATTCCCATTTCAATTCCATCAATCCAAACAGCCCCTAATGGGGCTTTTGGTAATCTGTTGCGGTAGTTAGTATGTATGAATGGTTTGTTGAAACGATATTTACATAACAGAATCTTATTAGTTTAGATTATTAATTTATTTATTATCTAAAATCTAACTACAAGATGTTTACATTTTTTTTTTttATATTCGTGAGTGTTCCGACCAGTTTACGTGCACCTCGACTAATCTCACGGGAACAATATGTTTACAAGTTATAGCAAAAAGTTTACATTCCTTATAGTCCATATAGATATTGAGAGAGTCAATAATAGAAACTAATACAAGTCTATCATTGATAGACTAATGTCTATCAGCTATAGAAATTAATAGAGGCTGTATCATTTATACTATATAAGTGATAGAAAGTGATACAAGCCTATCATTACTAGAGGTTGATAGAAGTCTATCAGTGTCTATCAATGCTCTTTTTGCTACTTCTATAAATAGTTTGACATTTTTTCTATTTGTGAAAATTTATCATAAATTTAGTTACAATGGTTTTTATTTAATAAATCAATATTCAGAATTAATTAATGCAGCCTAAGATACTGAACTGCGTTTtTTtCTTCTGTACAGCGACTGCAGGACCTTCCTTTTCTCCTGCGGAGGTTGCTTCGAGAACTCCACAATCCACAGAGATCTCTTCCTCTTGTCATTCGAACACGTGTTTACATTGCAGTTAAGTCAATGCCTCAACCCAACTTTCTCAACATCAATTACTACTTATTTAAGTTATTTTAAATTAAAGTTAACTCGTAAATATCCTCTGTTTTTATTGTTCTTTTATTTATCTGAATGAAAAAATTGCTTTCCCATAAGAAGTCTGAACAATCAAGAGAGACACATAACTGAATTCTGGTTGATTGAATGTCATTATATCTGCTTTAATTTGTAATTTGTAATTTGTTTACAGATGGTACTAAGTGTAATCTACACTGTGAGTCCCATCGATATCATACCAGAAGGTAATATATATATATTTTTCACCCCAGATTACCTGTTTGTACTTTCTGTTGGTTTATTGGTTCCTTATGAATTTGTTTTTTtCTGTTTTGGCTTGACTGTTTATGTGCAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCTGTACTCTATAATCGTCATGGAGGAACTTGAACTTCTTTCACAGCTTTTCCAAGACCTGTTAGAAATCAGAGTAGCCATTTtAATTTtACA CAATAAATTACTTCATCGGTAAGATCAACAAATCAGCACCGTGAAGGCATTCCAAGAAACGCGCCTCAGGTTTGAACTTCGAAGTCACAATCATACTCTTTCTACATCAAATTTTGATTAACACTTTGGCAATTTAGAAGGTTTTGATTCATAATATGGACGGCCCTCCTGTGGGCGATATCTGTTCAATCTGCCATGGAAGATTCAACATCCCTTGTCAAGCAAATTGTTCGCACTGGTTCTGCGGCAAGTGTATAATGCTTGTCTGGGATCATGGATCACCACTACACCCATGCAAATGCCCCTTATGTCGTCGTTCAATCACTTTATTAGTTCCTTCGGAGGTTTCACCAATTCAACAAAGTGACCCAGAGGTTGCACGGGTTCTTAACAATATTAGGACTTATAACCGTCATTTCGGTGGCAACTCAACTGATTTAAGTCAGCGACTGCAGGACCTTCCTTTTCTCCTGCGGAGGTTGCTTCGAGAACTCCACAATCCACAGAGATCTCTTCCTCTTGTCATTCGAACACGTGTTTACATTGCAATGGTACTAAGTGTAATCTACACTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCTGTACTCTATAATCGTCATGGAGGAACTTGAACTTCTTTCACAGCTTTTCCAAGACCTGTTAGAAATCAGAGTAGCCATTTTAATTTTACA ATGGACGGCCCTCCTGTGGGCGATATCTGTTCAATCTGCCATGGAAGATTCAACATCCCTTGTCAAGCAAATTGTTCGCACTGGTTCTGCGGCAAGTGTATAATGCTTGTCTGGGATCATGGATCACCACTACACCCATGCAAATGCCCCTTATGTCGTCGTTCAATCACTTTATTAGTTCCTTCGGAGGTTTCACCAATTCAACAAAGTGACCCAGAGGTTGCACGGGTTCTTAACAATATTAGGACTTATAACCGTCATTTCGGTGGCAACTCAACTGATTTAAGTCAGCGACTGCAGGACCTTCCTTTTCTCCTGCGGAGGTTGCTTCGAGAACTCCACAATCCACAGAGATCTCTTCCTCTTGTCATTCGAACACGTGTTTACATTGCAATGGTACTAAGTGTAATCTACACTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCTGTACTCTATAATCGTCATGGAGGAACTTGA MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT*
BLAST of Cucsa.365920.1 vs. Swiss-Prot
Match: RN170_DANRE (E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 3.9e-32 Identity = 70/180 (38.89%), Postives = 103/180 (57.22%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. Swiss-Prot
Match: RN170_XENLA (E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 4.3e-31 Identity = 65/172 (37.79%), Postives = 99/172 (57.56%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. Swiss-Prot
Match: RN170_BOVIN (E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2) HSP 1 Score: 135.2 bits (339), Expect = 7.4e-31 Identity = 63/172 (36.63%), Postives = 99/172 (57.56%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. Swiss-Prot
Match: RN170_HUMAN (E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2) HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30 Identity = 64/172 (37.21%), Postives = 98/172 (56.98%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. Swiss-Prot
Match: RN170_MOUSE (E3 ubiquitin-protein ligase RNF170 OS=Mus musculus GN=Rnf170 PE=1 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30 Identity = 63/172 (36.63%), Postives = 98/172 (56.98%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. TrEMBL
Match: B9IQE5_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s10760g PE=4 SV=1) HSP 1 Score: 293.5 bits (750), Expect = 1.8e-76 Identity = 134/185 (72.43%), Postives = 156/185 (84.32%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. TrEMBL
Match: A0A061FKC6_THECC (RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) isoform 1 OS=Theobroma cacao GN=TCM_036509 PE=4 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 5.2e-76 Identity = 132/185 (71.35%), Postives = 154/185 (83.24%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. TrEMBL
Match: A0A067JVY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22198 PE=4 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 5.2e-76 Identity = 131/185 (70.81%), Postives = 153/185 (82.70%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. TrEMBL
Match: A0A0D3D024_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 6.4e-74 Identity = 131/185 (70.81%), Postives = 154/185 (83.24%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. TrEMBL
Match: A0A0D3D7B9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 8.4e-74 Identity = 129/185 (69.73%), Postives = 157/185 (84.86%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. TAIR10
Match: AT1G72175.1 (AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232)) HSP 1 Score: 277.7 bits (709), Expect = 5.2e-75 Identity = 127/185 (68.65%), Postives = 150/185 (81.08%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. TAIR10
Match: AT1G22510.2 (AT1G22510.2 RING/U-box protein with domain of unknown function (DUF 1232)) HSP 1 Score: 226.1 bits (575), Expect = 1.8e-59 Identity = 106/155 (68.39%), Postives = 131/155 (84.52%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. TAIR10
Match: AT4G33940.1 (AT4G33940.1 RING/U-box superfamily protein) HSP 1 Score: 134.4 bits (337), Expect = 7.1e-32 Identity = 63/174 (36.21%), Postives = 99/174 (56.90%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. NCBI nr
Match: gi|449441207|ref|XP_004138374.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus]) HSP 1 Score: 389.0 bits (998), Expect = 4.5e-105 Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. NCBI nr
Match: gi|659126217|ref|XP_008463070.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo]) HSP 1 Score: 378.3 bits (970), Expect = 8.0e-102 Identity = 180/185 (97.30%), Postives = 182/185 (98.38%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. NCBI nr
Match: gi|224146326|ref|XP_002325966.1| (zinc finger family protein [Populus trichocarpa]) HSP 1 Score: 293.5 bits (750), Expect = 2.6e-76 Identity = 134/185 (72.43%), Postives = 156/185 (84.32%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. NCBI nr
Match: gi|802716459|ref|XP_012085009.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]) HSP 1 Score: 292.0 bits (746), Expect = 7.5e-76 Identity = 131/185 (70.81%), Postives = 153/185 (82.70%), Query Frame = 1
BLAST of Cucsa.365920.1 vs. NCBI nr
Match: gi|590603943|ref|XP_007020133.1| (RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) isoform 1 [Theobroma cacao]) HSP 1 Score: 292.0 bits (746), Expect = 7.5e-76 Identity = 132/185 (71.35%), Postives = 154/185 (83.24%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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