Cucsa.356900.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTTACAAATGTTTGAAGGGTGAATTATATTGGGATGGTATCAAAAGGGATGTTAAAGAATATTGTGATGAGCGTTTGATTTGTCAACGGAACAAAACCTTGGCTTTGTCTCCAACCGGGTTATTAATGCCACTGGAAATTCCAGAGGTTGTGTGGAGTGATATATCTATGGATTTTATTGAAGGATTATCCAAAACGGCAGGATTCGAGGTAATTTTCGTCGCGGTGGATCAATTGAGTAAATATGCACATTTTATAGCATTAAATCACCCATACACTGCTAAATTGTGTTGTGGTTAGATTACATGGATATCCTAAGTACATTGTGTTAGATAGGTACAAGGTTTTCCTTATTAATTTTTGGAGATAGATGTTCAGATTATCTGGTACCAAACTCAATAGAAGCTCGGCATACCATCCTCAATCTGATTGACAAACAAAAGCTGTTAATCGGAGTGTAGAGGTTTATCTAGTTGTTTATGTGGTGAGAAGCCTAAGGAGTGGATTAATTGGCTATACTGGACTGAGTATTGGTATAATACCACGTATCAGAGGGCGATCGGAATTACACCATTTCAGGCTGTTTATGGCCGTGCACCACCGCCTTTGATCTCTTATGGGGAGGCTGAAACATCTAATTCCACCCTTGACCAGCATCTTAGGGAAAGAGGTGTAGCATTAGCAGCATTGAAGGAACATCTCAAATTGGCCTAGGAGAAAATGAAGAAGGCTGCTGATTCAAAACGAGGAGATGTAGAGTTCCAAGTTGGTGATTTAGTACTTTTGAAGCTTCGTCCATATTGAGAAGTGTCTTTGAGAAAGAAGAGAAATGAGAAGTTGTCTCCGTAGTAGTTTGGGCCATATATGTTGATTGCACAGATTGGGCAAATAGCTTATAAGCTGGAACTTCCACCAGCAGCTGCCATACACCCTGTATTTCATGTCTCTCAATTAAAGAAGGTGGTTGGAGAACATAAGGAAGTGCACCAGTTGATTCCTTATATTTTGGAAGGCCATGAATGGGTTACTACACCAGAAGAAGTGCTGGATTATCAAAAAAATCCTACAACAGGTGTGTGGGAAGTCCTGATCAGTTGGAAGGGTCTGTTGCCTCACAAAGCAATGTGGGAGAACTGTGATGATTTTCAGAAGCAATTTCCGACGGACAAGGTGGTTTTGGAGGGGGGAAGTAATGTTAGACCTCCGATATTATTTACTTATAGTAGGAGAAAGAAGAAGGAGAaGTCAACAGTGTATCTTTGA atgacttacaaatgtttgaagggtgaattatattgggatggtatcaaaagggatgttaaagaatattgtgatgagcgtttgatttgtcaacggaacaaaaccttggctttgtctccaaccgggttattaatgccactggaaattccagaggttgtgtggagtgatatatctatggattttattgaaggattatccaaaacggcaggattcgaggtaattttcgtcgcggtggatcaattgagtaaatatgcacattttatagcattaaatcacccatacactgctaaATTGTGTTgtgcttataagctggaacttccaccagcagctgccatacaccctgtatttcatgtctctcaattaaagaaggtggttggagaacataaggaagtgcaccagttgattccttatattttggaaggccatgaatgggttactacaccagaagaagtgctggattatcaaaaaaaTCCTACAACAggtgtgtgggaagtcctgatcagttggaagggtctgttgcctcacaaagcaatgtgggagaactgtgatgattttcagaagcaatttccgacggacaaggtggttttggaggggggaagtaatgttagacctccgatattatttacttatagtaggagaaagaagaaGGAGAAGTCAACAGTGTATCTTTGA ATGACTTACAAATGTTTGAAGGGTGAATTATATTGGGATGGTATCAAAAGGGATGTTAAAGAATATTGTGATGAGCGTTTGATTTGTCAACGGAACAAAACCTTGGCTTTGTCTCCAACCGGGTTATTAATGCCACTGGAAATTCCAGAGGTTGTGTGGAGTGATATATCTATGGATTTTATTGAAGGATTATCCAAAACGGCAGGATTCGAGGTAATTTTCGTCGCGGTGGATCAATTGAGTAAATATGCACATTTTATAGCATTAAATCACCCATACACTGCTAAATTGTGTTGTGCTTATAAGCTGGAACTTCCACCAGCAGCTGCCATACACCCTGTATTTCATGTCTCTCAATTAAAGAAGGTGGTTGGAGAACATAAGGAAGTGCACCAGTTGATTCCTTATATTTTGGAAGGCCATGAATGGGTTACTACACCAGAAGAAGTGCTGGATTATCAAAAAAATCCTACAACAGGTGTGTGGGAAGTCCTGATCAGTTGGAAGGGTCTGTTGCCTCACAAAGCAATGTGGGAGAACTGTGATGATTTTCAGAAGCAATTTCCGACGGACAAGGTGGTTTTGGAGGGGGGAAGTAATGTTAGACCTCCGATATTATTTACTTATAGTAGGAGAAAGAAGAAGGAGAaGTCAACAGTGTATCTTTGA MTYKCLKGELYWDGIKRDVKEYCDERLICQRNKTLALSPTGLLMPLEIPEVVWSDISMDFIEGLSKTAGFEVIFVAVDQLSKYAHFIALNHPYTAKLCCAYKLELPPAAAIHPVFHVSQLKKVVGEHKEVHQLIPYILEGHEWVTTPEEVLDYQKNPTTGVWEVLISWKGLLPHKAMWENCDDFQKQFPTDKVVLEGGSNVRPPILFTYSRRKKKEKSTVYL*
BLAST of Cucsa.356900.1 vs. Swiss-Prot
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09 Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. Swiss-Prot
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09 Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. Swiss-Prot
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09 Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. Swiss-Prot
Match: TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09 Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. Swiss-Prot
Match: TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09 Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 3.2e-27 Identity = 58/95 (61.05%), Postives = 73/95 (76.84%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. TrEMBL
Match: B4YF15_ANACO (Polyprotein (Fragment) OS=Ananas comosus PE=4 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 8.6e-25 Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. TrEMBL
Match: A0A151QWC6_CAJCA (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cajanus cajan GN=KK1_044479 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24 Identity = 56/95 (58.95%), Postives = 68/95 (71.58%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. TrEMBL
Match: A0A151QR50_CAJCA (Retrotransposable element Tf2 (Fragment) OS=Cajanus cajan GN=KK1_046431 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24 Identity = 56/95 (58.95%), Postives = 68/95 (71.58%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. TrEMBL
Match: E2DMZ5_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 1.9e-24 Identity = 57/99 (57.58%), Postives = 68/99 (68.69%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. NCBI nr
Match: gi|731390478|ref|XP_010650386.1| (PREDICTED: uncharacterized protein LOC100264062 [Vitis vinifera]) HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30 Identity = 89/234 (38.03%), Postives = 116/234 (49.57%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. NCBI nr
Match: gi|307136175|gb|ADN34016.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 130.2 bits (326), Expect = 4.5e-27 Identity = 58/95 (61.05%), Postives = 73/95 (76.84%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. NCBI nr
Match: gi|659105263|ref|XP_008453052.1| (PREDICTED: uncharacterized protein LOC103493874 [Cucumis melo]) HSP 1 Score: 129.8 bits (325), Expect = 5.9e-27 Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. NCBI nr
Match: gi|659105263|ref|XP_008453052.1| (PREDICTED: uncharacterized protein LOC103493874 [Cucumis melo]) HSP 1 Score: 83.2 bits (204), Expect = 6.4e-13 Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 1
HSP 2 Score: 123.2 bits (308), Expect = 5.6e-25 Identity = 58/95 (61.05%), Postives = 71/95 (74.74%), Query Frame = 1
BLAST of Cucsa.356900.1 vs. NCBI nr
Match: gi|659113889|ref|XP_008456800.1| (PREDICTED: uncharacterized protein LOC103496640 [Cucumis melo]) HSP 1 Score: 52.8 bits (125), Expect = 9.2e-04 Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 1
HSP 2 Score: 32.7 bits (73), Expect = 9.9e+02 Identity = 19/39 (48.72%), Postives = 26/39 (66.67%), Query Frame = 1
HSP 3 Score: 122.1 bits (305), Expect = 1.2e-24 Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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