Cucsa.356550.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.TTGTCAGTATGGTGAAAGGTGCAAATTTCTCCACGCCACTCAGCAAGCACAACAACAAAAACCTAATCCCTTTGGATTTGGAGTTCCTAACAACGGTCAATCTAAAGCGGTTGCTGATTTTGGATCCAAACAAAACCAATATAAG TTGTCAGTATGGTGAAAGGTGCAAATTTCTCCACGCCACTCAGCAAGCACAACAACAAAAACCTAATCCCTTTGGATTTGGAGTTCCTAACAACGGTCAATCTAAAGCGGTTGCTGATTTTGGATCCAAACAAAACCAATATAAG TTGTCAGTATGGTGAAAGGTGCAAATTTCTCCACGCCACTCAGCAAGCACAACAACAAAAACCTAATCCCTTTGGATTTGGAGTTCCTAACAACGGTCAATCTAAAGCGGTTGCTGATTTTGGATCCAAACAAAACCAATATAAG CQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAVADFGSKQNQYK
BLAST of Cucsa.356550.1 vs. TrEMBL
Match: A0A061GQX2_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_039821 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 8.9e-12 Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1
BLAST of Cucsa.356550.1 vs. TrEMBL
Match: A0A061GYK8_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_039821 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 8.9e-12 Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1
BLAST of Cucsa.356550.1 vs. TrEMBL
Match: A0A061GRV6_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 5 OS=Theobroma cacao GN=TCM_039821 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 8.9e-12 Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1
BLAST of Cucsa.356550.1 vs. TrEMBL
Match: A0A061GSU7_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 6 (Fragment) OS=Theobroma cacao GN=TCM_039821 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 8.9e-12 Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1
BLAST of Cucsa.356550.1 vs. TrEMBL
Match: A0A061GS52_THECC (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_039821 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 8.9e-12 Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1
BLAST of Cucsa.356550.1 vs. NCBI nr
Match: gi|778664070|ref|XP_011660211.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Cucumis sativus]) HSP 1 Score: 107.1 bits (266), Expect = 8.9e-21 Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1
BLAST of Cucsa.356550.1 vs. NCBI nr
Match: gi|778664073|ref|XP_011660212.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 [Cucumis sativus]) HSP 1 Score: 107.1 bits (266), Expect = 8.9e-21 Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1
BLAST of Cucsa.356550.1 vs. NCBI nr
Match: gi|659085902|ref|XP_008443667.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Cucumis melo]) HSP 1 Score: 100.5 bits (249), Expect = 8.3e-19 Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1
BLAST of Cucsa.356550.1 vs. NCBI nr
Match: gi|659085904|ref|XP_008443668.1| (PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 [Cucumis melo]) HSP 1 Score: 100.5 bits (249), Expect = 8.3e-19 Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1
BLAST of Cucsa.356550.1 vs. NCBI nr
Match: gi|590582326|ref|XP_007014593.1| (Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1 [Theobroma cacao]) HSP 1 Score: 76.6 bits (187), Expect = 1.3e-11 Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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