Cucsa.356510.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.TATTTGTTTCCCCTGTTCGATGGGGGGCTTTTACGTTAGAAAGGGTGTATGTTTTGTTATTATTGTTATTATTTTTACCCTTGATCTTTTTTTCTTTACTTTTTTTTGTGCAAAAGAGTTAGTTGGAAATCAGGAATTTTTTCCTCAACTAAGAATATGTCAAGAAAAGATTGAAATTTTTTTCATTCATCCTTATCACCCATTTTGGTTTCAGTAAATTTGCTGTTTGAAAGAGGGATTCCTATACTTTCCAATTCTTCTATTTTTTTGAACAATAAACAATTGTTTTTAAAGGAAACATGCCTCTTCATTCATATAATGAAAAGAGACTAATGTTCAGAATACAATATTAAGATGCAAGGAGAACAAAACACGAGAAACGACAACCAAACCCAAAACGCCCTCAGCAAAACCCAAAATGCCCTCAGCAAAACCCAAAATGGTTCGAGGATAACTAAAAAAACAAAAATAATAACAATACATATGAACATGCGTAAAACGATCAAGAAAATAAAAATCTGGTTGAAGAGGCTCTCTGATTCAAGTAGAGACCTTGTTGTGAGGATAGTAAAGACAGAACGAGCCCTTCAAGTCAAACAGAATGTGAGAGACATGCTGAAACCTTTCAAATCAAAATCCATCTAGTGGAACTTTAACGATACTGCACTGGGTCTTTTTCGGATAGTTTTATTCCAAAACAATCTATGTCTTCATTCAAACGGATTCAAAATTGTTCAACTATGGACTTCAAATGTCTTCAACTATAAACCGCTTCTCTTTGATGTAATGAGTAGTAATAGAAGCTTAAAGAGATGCAAACTCTCAAAAGGAGAGAGAAAAAAGACATGAAGAAATACAACCACGTTGAGATACACTTACAAACAACTACGACCAACAGCCCTCCTTCAAATTCTGAAAAACAAAGGCTGCTGCAAAGCTACTGGAGAAACCAAAAAGACGACCACCTACCCACAAAAAGATTAACAAGGAGCAAACTGACCGCTGAAAATGTTGGGAAGAAGTAAAGCACCGGGGCTGGATGGATTCACGAAAGAATTCTTAATCAAATTTTGGGATAAATTGAAGAGTGATTTGCATTCCCTTTTAAAGATTTCTATGCTAATGGGAAGCTCAATGCTTGTGTAATGGAAAACTTCATCTGTTTAATCAAGAAAAAAGACGATGCTTCAAAGGTGAAAGATTTCAGGCCAACAAGTCTTACTACTTTGACTTGCAAGCTGGTGGCAAAAGTATTGGCTGAAAAACTTGAGAAGACCATGCGAAGCATTATTGACCCTCCTCACAGTGCCTTTTTAGAAGGAAGGCAAATCATCGATCCCATTCTCATTGCCAACGAAGCAGTGGAAGAATACTGTGCGAAAAAGAAGAAAGGGTGGTTGATTAAGTTGGACCTTGAAAAAGCCTTTGATAGAGTTGATTGGGGACTTTTTAGAAAAAGTAATGGTGTAAAAATTTTTTGATGGCAGATGGATAAAATTGATAATGGGTTGTGTGCGCGACCCCAAATATTCAATCTTTATAAATGGATGACCACGAGGCAGAACTCAAGCATCAAAAGGCCTACGACAAGGAGACCCACTTTCCCCATTTCTCTTCCTCCTAGCAAGTGAAGTTCTAAGCAGTCTAATTTCAACGGTACATGCAAAAGGATTGTTTGAAGGCTTTATTGTAGGCAAAGACAAGGCTCATGTTTCCGTACTCCAGTTTGCTGATGATACTCATATTCTGCAAAAATGA TATTTGTTTCCCCTGTTCGATGGGGGGCTTTTACGTTAGAAAGGatgcaaggagaacaaaacacgagaaacgacaaccaaacccaaaaCGCCCTCAGCAAAACCCAAAATGCCCTCAGCAAAACCCAAAATGGTTCGAGGATAACTAAAAAAACAAAAATAATAACAATACATATGAACATGCGTAAAACGATCAAGAAAATAAAAATCTGGTTGAAGAGGCTCTCTGATTCAAGTAGAGACCTTGTTGTGAGGATAGTAAAGACAGAACGAGCCCTTCAAGTCAAACAGAATctcaatgcttgtgtaatggaaaacttcatctgtttaatcaagaaaaaagacgatgcttcaaaggtgaaagatttcaggccaacaagtcttactactttgacttgcaagctggtggcaaaagtattggctgaaaaacttgagaagaccatgcgaagcattattgaccctcctcacagtgcctttttagaaggaaggcaaatcatcgatcccattctcattgccaacgaagcagtggaagaatactgtgcgaaaaagaagaaagggtggttgattaagttggaccttgaaaaagcctttgatagagttgattggggactttttagaaaaagcagaactcaagcatcaaaaggcctacgacaaggagacccactttccccatttctcttcctcctagcaagtgaagttctaagcagtctaatttcaacggtacatgcaaaaggattgtttgaaggctttattgtaggcaaagacaaggctcatgtttccgtactccagtttgctgatgatactcatattctgcaaaaatga TATTTGTTTCCCCTGTTCGATGGGGGGCTTTTACGTTAGAAAGGATGCAAGGAGAACAAAACACGAGAAACGACAACCAAACCCAAAACGCCCTCAGCAAAACCCAAAATGCCCTCAGCAAAACCCAAAATGGTTCGAGGATAACTAAAAAAACAAAAATAATAACAATACATATGAACATGCGTAAAACGATCAAGAAAATAAAAATCTGGTTGAAGAGGCTCTCTGATTCAAGTAGAGACCTTGTTGTGAGGATAGTAAAGACAGAACGAGCCCTTCAAGTCAAACAGAATCTCAATGCTTGTGTAATGGAAAACTTCATCTGTTTAATCAAGAAAAAAGACGATGCTTCAAAGGTGAAAGATTTCAGGCCAACAAGTCTTACTACTTTGACTTGCAAGCTGGTGGCAAAAGTATTGGCTGAAAAACTTGAGAAGACCATGCGAAGCATTATTGACCCTCCTCACAGTGCCTTTTTAGAAGGAAGGCAAATCATCGATCCCATTCTCATTGCCAACGAAGCAGTGGAAGAATACTGTGCGAAAAAGAAGAAAGGGTGGTTGATTAAGTTGGACCTTGAAAAAGCCTTTGATAGAGTTGATTGGGGACTTTTTAGAAAAAGCAGAACTCAAGCATCAAAAGGCCTACGACAAGGAGACCCACTTTCCCCATTTCTCTTCCTCCTAGCAAGTGAAGTTCTAAGCAGTCTAATTTCAACGGTACATGCAAAAGGATTGTTTGAAGGCTTTATTGTAGGCAAAGACAAGGCTCATGTTTCCGTACTCCAGTTTGCTGATGATACTCATATTCTGCAAAAATGA FVSPVRWGAFTLERMQGEQNTRNDNQTQNALSKTQNALSKTQNGSRITKKTKIITIHMNMRKTIKKIKIWLKRLSDSSRDLVVRIVKTERALQVKQNLNACVMENFICLIKKKDDASKVKDFRPTSLTTLTCKLVAKVLAEKLEKTMRSIIDPPHSAFLEGRQIIDPILIANEAVEEYCAKKKKGWLIKLDLEKAFDRVDWGLFRKSRTQASKGLRQGDPLSPFLFLLASEVLSSLISTVHAKGLFEGFIVGKDKAHVSVLQFADDTHILQK*
BLAST of Cucsa.356510.1 vs. Swiss-Prot
Match: LORF2_HUMAN (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08 Identity = 57/222 (25.68%), Postives = 99/222 (44.59%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. Swiss-Prot
Match: LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2) HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07 Identity = 40/128 (31.25%), Postives = 68/128 (53.12%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 2.2e-07 Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. TrEMBL
Match: A5BY79_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031264 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 4.7e-33 Identity = 85/208 (40.87%), Postives = 115/208 (55.29%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. TrEMBL
Match: M5W794_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016462mg PE=4 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32 Identity = 82/179 (45.81%), Postives = 110/179 (61.45%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. TrEMBL
Match: A5BQI4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030910 PE=4 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 4.0e-32 Identity = 86/208 (41.35%), Postives = 114/208 (54.81%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. TrEMBL
Match: A5BN97_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009103 PE=4 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 5.2e-32 Identity = 80/185 (43.24%), Postives = 114/185 (61.62%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. TrEMBL
Match: A5BN18_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006980 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 5.8e-31 Identity = 85/221 (38.46%), Postives = 119/221 (53.85%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. TAIR10
Match: ATMG01250.1 (ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)) HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08 Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. TAIR10
Match: AT4G20520.1 (AT4G20520.1 RNA binding;RNA-directed DNA polymerases) HSP 1 Score: 55.1 bits (131), Expect = 8.0e-08 Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. NCBI nr
Match: gi|694414464|ref|XP_009335445.1| (PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri]) HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34 Identity = 91/220 (41.36%), Postives = 117/220 (53.18%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. NCBI nr
Match: gi|147783561|emb|CAN68445.1| (hypothetical protein VITISV_031264 [Vitis vinifera]) HSP 1 Score: 149.8 bits (377), Expect = 6.8e-33 Identity = 85/208 (40.87%), Postives = 115/208 (55.29%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. NCBI nr
Match: gi|658048925|ref|XP_008360144.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]) HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32 Identity = 86/203 (42.36%), Postives = 115/203 (56.65%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. NCBI nr
Match: gi|595799047|ref|XP_007201486.1| (hypothetical protein PRUPE_ppa016462mg, partial [Prunus persica]) HSP 1 Score: 148.7 bits (374), Expect = 1.5e-32 Identity = 82/179 (45.81%), Postives = 110/179 (61.45%), Query Frame = 1
BLAST of Cucsa.356510.1 vs. NCBI nr
Match: gi|658030603|ref|XP_008350747.1| (PREDICTED: uncharacterized protein LOC103414113 [Malus domestica]) HSP 1 Score: 147.1 bits (370), Expect = 4.4e-32 Identity = 85/203 (41.87%), Postives = 114/203 (56.16%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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