Cucsa.356510 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.356510
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionLINE-1 reverse transcriptase isogeny
Locationscaffold03577 : 1322272 .. 1324029 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTGTTTCCCCTGTTCGATGGGGGGCTTTTACGTTAGAAAGGGTGTATGTTTTGTTATTATTGTTATTATTTTTACCCTTGATCTTTTTTTCTTTACTTTTTTTTGTGCAAAAGAGTTAGTTGGAAATCAGGAATTTTTTCCTCAACTAAGAATATGTCAAGAAAAGATTGAAATTTTTTTCATTCATCCTTATCACCCATTTTGGTTTCAGTAAATTTGCTGTTTGAAAGAGGGATTCCTATACTTTCCAATTCTTCTATTTTTTTGAACAATAAACAATTGTTTTTAAAGGAAACATGCCTCTTCATTCATATAATGAAAAGAGACTAATGTTCAGAATACAATATTAAGATGCAAGGAGAACAAAACACGAGAAACGACAACCAAACCCAAAACGCCCTCAGCAAAACCCAAAATGCCCTCAGCAAAACCCAAAATGGTTCGAGGATAACTAAAAAAACAAAAATAATAACAATACATATGAACATGCGTAAAACGATCAAGAAAATAAAAATCTGGTTGAAGAGGCTCTCTGATTCAAGTAGAGACCTTGTTGTGAGGATAGTAAAGACAGAACGAGCCCTTCAAGTCAAACAGAATGTGAGAGACATGCTGAAACCTTTCAAATCAAAATCCATCTAGTGGAACTTTAACGATACTGCACTGGGTCTTTTTCGGATAGTTTTATTCCAAAACAATCTATGTCTTCATTCAAACGGATTCAAAATTGTTCAACTATGGACTTCAAATGTCTTCAACTATAAACCGCTTCTCTTTGATGTAATGAGTAGTAATAGAAGCTTAAAGAGATGCAAACTCTCAAAAGGAGAGAGAAAAAAGACATGAAGAAATACAACCACGTTGAGATACACTTACAAACAACTACGACCAACAGCCCTCCTTCAAATTCTGAAAAACAAAGGCTGCTGCAAAGCTACTGGAGAAACCAAAAAGACGACCACCTACCCACAAAAAGATTAACAAGGAGCAAACTGACCGCTGAAAATGTTGGGAAGAAGTAAAGCACCGGGGCTGGATGGATTCACGAAAGAATTCTTAATCAAATTTTGGGATAAATTGAAGAGTGATTTGCATTCCCTTTTAAAGATTTCTATGCTAATGGGAAGCTCAATGCTTGTGTAATGGAAAACTTCATCTGTTTAATCAAGAAAAAAGACGATGCTTCAAAGGTGAAAGATTTCAGGCCAACAAGTCTTACTACTTTGACTTGCAAGCTGGTGGCAAAAGTATTGGCTGAAAAACTTGAGAAGACCATGCGAAGCATTATTGACCCTCCTCACAGTGCCTTTTTAGAAGGAAGGCAAATCATCGATCCCATTCTCATTGCCAACGAAGCAGTGGAAGAATACTGTGCGAAAAAGAAGAAAGGGTGGTTGATTAAGTTGGACCTTGAAAAAGCCTTTGATAGAGTTGATTGGGGACTTTTTAGAAAAAGTAATGGTGTAAAAATTTTTTGATGGCAGATGGATAAAATTGATAATGGGTTGTGTGCGCGACCCCAAATATTCAATCTTTATAAATGGATGACCACGAGGCAGAACTCAAGCATCAAAAGGCCTACGACAAGGAGACCCACTTTCCCCATTTCTCTTCCTCCTAGCAAGTGAAGTTCTAAGCAGTCTAATTTCAACGGTACATGCAAAAGGATTGTTTGAAGGCTTTATTGTAGGCAAAGACAAGGCTCATGTTTCCGTACTCCAGTTTGCTGATGATACTCATATTCTGCAAAAATGA

mRNA sequence

TATTTGTTTCCCCTGTTCGATGGGGGGCTTTTACGTTAGAAAGGatgcaaggagaacaaaacacgagaaacgacaaccaaacccaaaaCGCCCTCAGCAAAACCCAAAATGCCCTCAGCAAAACCCAAAATGGTTCGAGGATAACTAAAAAAACAAAAATAATAACAATACATATGAACATGCGTAAAACGATCAAGAAAATAAAAATCTGGTTGAAGAGGCTCTCTGATTCAAGTAGAGACCTTGTTGTGAGGATAGTAAAGACAGAACGAGCCCTTCAAGTCAAACAGAATctcaatgcttgtgtaatggaaaacttcatctgtttaatcaagaaaaaagacgatgcttcaaaggtgaaagatttcaggccaacaagtcttactactttgacttgcaagctggtggcaaaagtattggctgaaaaacttgagaagaccatgcgaagcattattgaccctcctcacagtgcctttttagaaggaaggcaaatcatcgatcccattctcattgccaacgaagcagtggaagaatactgtgcgaaaaagaagaaagggtggttgattaagttggaccttgaaaaagcctttgatagagttgattggggactttttagaaaaagcagaactcaagcatcaaaaggcctacgacaaggagacccactttccccatttctcttcctcctagcaagtgaagttctaagcagtctaatttcaacggtacatgcaaaaggattgtttgaaggctttattgtaggcaaagacaaggctcatgtttccgtactccagtttgctgatgatactcatattctgcaaaaatga

Coding sequence (CDS)

TATTTGTTTCCCCTGTTCGATGGGGGGCTTTTACGTTAGAAAGGATGCAAGGAGAACAAAACACGAGAAACGACAACCAAACCCAAAACGCCCTCAGCAAAACCCAAAATGCCCTCAGCAAAACCCAAAATGGTTCGAGGATAACTAAAAAAACAAAAATAATAACAATACATATGAACATGCGTAAAACGATCAAGAAAATAAAAATCTGGTTGAAGAGGCTCTCTGATTCAAGTAGAGACCTTGTTGTGAGGATAGTAAAGACAGAACGAGCCCTTCAAGTCAAACAGAATCTCAATGCTTGTGTAATGGAAAACTTCATCTGTTTAATCAAGAAAAAAGACGATGCTTCAAAGGTGAAAGATTTCAGGCCAACAAGTCTTACTACTTTGACTTGCAAGCTGGTGGCAAAAGTATTGGCTGAAAAACTTGAGAAGACCATGCGAAGCATTATTGACCCTCCTCACAGTGCCTTTTTAGAAGGAAGGCAAATCATCGATCCCATTCTCATTGCCAACGAAGCAGTGGAAGAATACTGTGCGAAAAAGAAGAAAGGGTGGTTGATTAAGTTGGACCTTGAAAAAGCCTTTGATAGAGTTGATTGGGGACTTTTTAGAAAAAGCAGAACTCAAGCATCAAAAGGCCTACGACAAGGAGACCCACTTTCCCCATTTCTCTTCCTCCTAGCAAGTGAAGTTCTAAGCAGTCTAATTTCAACGGTACATGCAAAAGGATTGTTTGAAGGCTTTATTGTAGGCAAAGACAAGGCTCATGTTTCCGTACTCCAGTTTGCTGATGATACTCATATTCTGCAAAAATGA

Protein sequence

FVSPVRWGAFTLERMQGEQNTRNDNQTQNALSKTQNALSKTQNGSRITKKTKIITIHMNMRKTIKKIKIWLKRLSDSSRDLVVRIVKTERALQVKQNLNACVMENFICLIKKKDDASKVKDFRPTSLTTLTCKLVAKVLAEKLEKTMRSIIDPPHSAFLEGRQIIDPILIANEAVEEYCAKKKKGWLIKLDLEKAFDRVDWGLFRKSRTQASKGLRQGDPLSPFLFLLASEVLSSLISTVHAKGLFEGFIVGKDKAHVSVLQFADDTHILQK*
Homology
[Close]
BLAST of Cucsa.356510 vs. Swiss-Prot
Match: LORF2_HUMAN (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08
Identity = 57/222 (25.68%), Postives = 99/222 (44.59%), Query Frame = 1 

Query: 80  DLVVRIVKTERALQVKQNLNACVMENFICLIKKKD-DASKVKDFRPTSLTTLTCKLVAKV 139
           +LV  ++K  ++++ +  L     E  I LI K   D +K ++FRP SL  +  K++ K+
Sbjct: 487 ELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKI 546

Query: 140 LAEKLEKTMRSIIDPPHSAFLEGRQIIDPILIANEAVEEY-CAKKKKGWLIKLDLEKAFD 199
           LA ++++ ++ +I      F+ G Q    I  +   ++    AK K   +I +D EKAFD
Sbjct: 547 LANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFD 606

Query: 200 RVDWGLFRKSRTQ---------------------------------ASKGLRQGDPLSPF 259
           ++      K+  +                                    G RQG PLSP 
Sbjct: 607 KIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPL 666

Query: 260 LFLLASEVLSSLISTVHAKGLFEGFIVGKDKAHVSVLQFADD 267
           LF +  EVL+     +  +   +G  +GK++  +S+  FADD
Sbjct: 667 LFNIVLEVLA---RAIRQEKEIKGIQLGKEEVKLSL--FADD 703

[Close]
BLAST of Cucsa.356510 vs. Swiss-Prot
Match: LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07
Identity = 40/128 (31.25%), Postives = 68/128 (53.12%), Query Frame = 1 

Query: 80  DLVVRIVKTERALQVKQNLNACVMENFICLIKK-KDDASKVKDFRPTSLTTLTCKLVAKV 139
           DL+  + K    ++V+  L     E  I LI K + D +K+++FRP SL  +  K++ K+
Sbjct: 494 DLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKI 553

Query: 140 LAEKLEKTMRSIIDPPHSAFLEG-------RQIIDPILIANEAVEEYCAKKKKGWLIKLD 199
           LA ++++ +++II P    F+ G       R+ I+ I   N+       K K   +I LD
Sbjct: 554 LANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINK------LKDKNHMIISLD 613

[Close]
BLAST of Cucsa.356510 vs. Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-07
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 1 

Query: 212 SKGLRQGDPLSPFLFLLASEVLSSLISTVHAKGLFEGFIVGKDKAHVSVLQFADDT 268
           S+GLRQGDPLSP+LF+L +EVLS L      +G   G  V  +   ++ L FADDT
Sbjct: 25  SRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFADDT 80

[Close]
BLAST of Cucsa.356510 vs. TrEMBL
Match: A5BY79_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031264 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.7e-33
Identity = 85/208 (40.87%), Postives = 115/208 (55.29%), Query Frame = 1 

Query: 98   LNACVMENFICLIKKKDDASKVKDFRPTSLTTLTCKLVAKVLAEKLEKTMRSIIDPPHSA 157
            +N      FI ++ KK    K+ D+RP SL T   K++AKVL+ +L K +   I     A
Sbjct: 908  INQSTNATFIAMVPKKSQTFKISDYRPISLVTSLYKIIAKVLSGRLRKVLHETIFGSQGA 967

Query: 158  FLEGRQIIDPILIANEAVEEYCAKKKKGWLIKLDLEKAFDRVDWG-----LFRKSRTQ-- 217
            F+EGRQI+D +LI NE V+E     ++G + K+D EKA+D V+WG     L RK  +Q  
Sbjct: 968  FVEGRQILDAVLIXNEVVDEKRRSGEEGVVFKIDFEKAYDHVEWGFLDHVLQRKGFSQKW 1027

Query: 218  --------------------------ASKGLRQGDPLSPFLFLLASEVLSSLISTVHAKG 273
                                      AS+GLRQGDPLSPFLF L ++VLS L+      G
Sbjct: 1028 RSWMRGCLSSSSFAILVNGNAKXWVKASRGLRQGDPLSPFLFTLVADVLSRLMIRAEETG 1087

[Close]
BLAST of Cucsa.356510 vs. TrEMBL
Match: M5W794_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016462mg PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 82/179 (45.81%), Postives = 110/179 (61.45%), Query Frame = 1 

Query: 98  LNACVMENFICLIKKKDDASKVKDFRPTSLTTLTCKLVAKVLAEKLEKTMRSIIDPPHSA 157
           +N    E FICLI KK ++ KV D+RP SL T   K+++KVLA +L + + + I     A
Sbjct: 372 VNGVTNETFICLIPKKANSVKVTDYRPISLVTSLYKVISKVLASRLREVLGNTISQSQGA 431

Query: 158 FLEGRQIIDPILIANEAVEEYCAKKKKGWLIKLDLEKAFDRVDWG-----LFRKS-RTQA 217
           F++ RQI+D +L+ANE  EE   +K+KG + K+D EKA+D V+W      L RK    +A
Sbjct: 432 FVQKRQILDAVLVANEVAEEVRKQKRKGLVFKIDFEKAYDHVEWNFVDDVLDRKGFGFRA 491

Query: 218 SKGLRQGDPLSPFLFLLASEVLSSLISTVHAKGLFEGFIVGKDKAHVSVLQFADDTHIL 271
            +GLRQ DPLSPFLF L S+VL  +I       L  G + G D+  VS LQFADDT  L
Sbjct: 492 FRGLRQRDPLSPFLFTLVSDVLRRIIERAQDVNLVHGIVSGHDQVEVSHLQFADDTIFL 550

[Close]
BLAST of Cucsa.356510 vs. TrEMBL
Match: A5BQI4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030910 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.0e-32
Identity = 86/208 (41.35%), Postives = 114/208 (54.81%), Query Frame = 1 

Query: 98  LNACVMENFICLIKKKDDASKVKDFRPTSLTTLTCKLVAKVLAEKLEKTMRSIIDPPHSA 157
           +N      FI L+ KK  + K+ D+RP SL T   K++AKVL+ +L K +   I     A
Sbjct: 145 INQSTNATFIALVPKKSQSVKISDYRPISLVTSLYKIIAKVLSGRLRKVLHETISDSQGA 204

Query: 158 FLEGRQIIDPILIANEAVEEYCAKKKKGWLIKLDLEKAFDRVDWG-----LFRKSRTQA- 217
           F+EGR I+D +LIANE V+E     ++G + K+D EKA+D VDWG     L RK  +Q  
Sbjct: 205 FVEGRHILDAVLIANEVVDEKRRSGEEGIVFKIDFEKAYDHVDWGFLDHVLQRKGFSQKW 264

Query: 218 --------------------SKG-------LRQGDPLSPFLFLLASEVLSSLISTVHAKG 273
                               +KG       LRQGDPLSPFLF L ++VLS ++      G
Sbjct: 265 RLWIRGCLYSSSFAILVNGNAKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLFRAEETG 324

[Close]
BLAST of Cucsa.356510 vs. TrEMBL
Match: A5BN97_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009103 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.2e-32
Identity = 80/185 (43.24%), Postives = 114/185 (61.62%), Query Frame = 1 

Query: 94  VKQNLNACVMENFICLIKKKDDASKVKDFRPTSLTTLTCKLVAKVLAEKLEKTMRSIIDP 153
           + QN NA    +FI L+ KK  + K+ DFRP SL T   K++AKVL+ +L   ++  I  
Sbjct: 207 INQNTNA----SFIVLLPKKSQSKKISDFRPISLITCLYKMIAKVLSGRLRGVLQETIHS 266

Query: 154 PHSAFLEGRQIIDPILIANEAVEEYCAKKKKGWLIKLDLEKAFDRVDW----------GL 213
              AF++GRQI+D +LIANE V+E     ++G + K+D EKA+D V W          G 
Sbjct: 267 TQGAFVQGRQILDAVLIANEIVDEKKRSGEEGVVFKIDFEKAYDHVKWDFLDHVLENKGF 326

Query: 214 FRKSRT-QASKGLRQGDPLSPFLFLLASEVLSSLISTVHAKGLFEGFIVGKDKAHVSVLQ 268
             K R+   ++GLRQGDPLSPFLF + ++VLS ++     + L EGF VG+++  V+ LQ
Sbjct: 327 SSKWRSWMRARGLRQGDPLSPFLFTIVADVLSRMLLKAEERNLLEGFRVGRNRCRVTHLQ 386

[Close]
BLAST of Cucsa.356510 vs. TrEMBL
Match: A5BN18_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006980 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.8e-31
Identity = 85/221 (38.46%), Postives = 119/221 (53.85%), Query Frame = 1 

Query: 80  DLVVRIVKTERALQVKQNLNACVMENFICLIKKKDDASKVKDFRPTSLTTLTCKLVAKVL 139
           DLV    +  R+  + Q+ NA    +FI L+ KK  A K+ D+RP SL T   K++AKVL
Sbjct: 224 DLVRVFDEFHRSGIINQSTNA----SFIVLLPKKSMAKKISDYRPISLITSLYKIIAKVL 283

Query: 140 AEKLEKTMRSIIDPPHSAFLEGRQIIDPILIANEAVEEYCAKKKKGWLIKLDLEKAFDRV 199
           A +L   +   I     AF++GRQI+D +LIANE V+E     ++G + K+D EKA+D V
Sbjct: 284 AGRLRGILHETIHSTQGAFVQGRQILDAVLIANEIVDEKKRSGEEGVVFKIDFEKAYDHV 343

Query: 200 DWGLF---------------------------------RKSRTQASKGLRQGDPLSPFLF 259
            W                                     K   +AS+GLRQGDPLSPFLF
Sbjct: 344 SWDFLDHVMEKKGFNPRWRKWIRGCLSSVSFAILVNGNAKGXVKASRGLRQGDPLSPFLF 403

Query: 260 LLASEVLSSLISTVHAKGLFEGFIVGKDKAHVSVLQFADDT 268
            + ++VLS ++     + +FEGF VG+++  VS LQFADDT
Sbjct: 404 TIVADVLSRMLLRAEERNVFEGFRVGRNRTRVSHLQFADDT 440

[Close]
BLAST of Cucsa.356510 vs. TAIR10
Match: ATMG01250.1 (ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase))

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 1 

Query: 212 SKGLRQGDPLSPFLFLLASEVLSSLISTVHAKGLFEGFIVGKDKAHVSVLQFADDT 268
           S+GLRQGDPLSP+LF+L +EVLS L      +G   G  V  +   ++ L FADDT
Sbjct: 25  SRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFADDT 80

[Close]
BLAST of Cucsa.356510 vs. TAIR10
Match: AT4G20520.1 (AT4G20520.1 RNA binding;RNA-directed DNA polymerases)

HSP 1 Score: 55.1 bits (131), Expect = 8.0e-08
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1 

Query: 139 LAEKLEKTMRSIIDPPHSAFLEGRQIIDPILIANEAVEEYCAKK-KKGW-LIKLDLEKAF 198
           + E+L+  M ++I P  ++F+ GR   D I+   EAV     KK  KGW L+KLDLEKA+
Sbjct: 1   MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60

Query: 199 DRVDW 202
           DR+ W
Sbjct: 61  DRIRW 65

[Close]
BLAST of Cucsa.356510 vs. NCBI nr
Match: gi|694414464|ref|XP_009335445.1| (PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri])

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 91/220 (41.36%), Postives = 117/220 (53.18%), Query Frame = 1 

Query: 81  LVVRIVKTERALQVKQNLNACVMENFICLIKKKDDASKVKDFRPTSLTTLTCKLVAKVLA 140
           L V IVK          +NA   E FICLI KK D+ KV D+RP SL T   K+VAK L 
Sbjct: 291 LKVDIVKVMEEFFETGIINAVTNETFICLIPKKSDSLKVTDYRPISLVTGLYKIVAKTLV 350

Query: 141 EKLEKTMRSIIDPPHSAFLEGRQIIDPILIANEAVEEYCAKKKKGWLIKLDLEKAFDRVD 200
            +L + M S I P    F++GRQI+D +LIANE VEE   KK++G + K+D EKA+D V+
Sbjct: 351 SRLREVMGSTISPHQGGFVKGRQILDAVLIANELVEEVRQKKEEGLMFKIDFEKAYDHVE 410

Query: 201 WGLFR---------------------------------KSRTQASKGLRQGDPLSPFLFL 260
           W                                     K +  AS+ LRQGDPLSPFLF 
Sbjct: 411 WRFLDEILQRKGFGNRWRKWVQGCQNSANFSILINGRPKGKFHASRRLRQGDPLSPFLFT 470

Query: 261 LASEVLSSLISTVHAKGLFEGFIVGKDKAHVSVLQFADDT 268
           L  +VLS L+   H   L +G  +G+++  +S LQFADDT
Sbjct: 471 LVVDVLSRLMEKAHENHLIKGLGIGQERVEISHLQFADDT 510

[Close]
BLAST of Cucsa.356510 vs. NCBI nr
Match: gi|147783561|emb|CAN68445.1| (hypothetical protein VITISV_031264 [Vitis vinifera])

HSP 1 Score: 149.8 bits (377), Expect = 6.8e-33
Identity = 85/208 (40.87%), Postives = 115/208 (55.29%), Query Frame = 1 

Query: 98   LNACVMENFICLIKKKDDASKVKDFRPTSLTTLTCKLVAKVLAEKLEKTMRSIIDPPHSA 157
            +N      FI ++ KK    K+ D+RP SL T   K++AKVL+ +L K +   I     A
Sbjct: 908  INQSTNATFIAMVPKKSQTFKISDYRPISLVTSLYKIIAKVLSGRLRKVLHETIFGSQGA 967

Query: 158  FLEGRQIIDPILIANEAVEEYCAKKKKGWLIKLDLEKAFDRVDWG-----LFRKSRTQ-- 217
            F+EGRQI+D +LI NE V+E     ++G + K+D EKA+D V+WG     L RK  +Q  
Sbjct: 968  FVEGRQILDAVLIXNEVVDEKRRSGEEGVVFKIDFEKAYDHVEWGFLDHVLQRKGFSQKW 1027

Query: 218  --------------------------ASKGLRQGDPLSPFLFLLASEVLSSLISTVHAKG 273
                                      AS+GLRQGDPLSPFLF L ++VLS L+      G
Sbjct: 1028 RSWMRGCLSSSSFAILVNGNAKXWVKASRGLRQGDPLSPFLFTLVADVLSRLMIRAEETG 1087

[Close]
BLAST of Cucsa.356510 vs. NCBI nr
Match: gi|658048925|ref|XP_008360144.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 86/203 (42.36%), Postives = 115/203 (56.65%), Query Frame = 1 

Query: 98  LNACVMENFICLIKKKDDASKVKDFRPTSLTTLTCKLVAKVLAEKLEKTMRSIIDPPHSA 157
           +NA   E FICLI KK D+ KV DFRP SL T   K++AK LA +L++ + S I     A
Sbjct: 13  INAVTNETFICLIPKKSDSMKVTDFRPISLVTGLYKIMAKTLASRLKEVLGSTISQNQGA 72

Query: 158 FLEGRQIIDPILIANEAVEEYCAKKKKGWLIKLDLEKAFDRV----------------DW 217
           F++ RQI+D +LIANE VEE   KK++G ++K+D EKA+D V                 W
Sbjct: 73  FVKDRQILDAVLIANEVVEEVRQKKEEGLVLKIDFEKAYDHVEWRFLDEVLQRKSFGNRW 132

Query: 218 GLFR-----------------KSRTQASKGLRQGDPLSPFLFLLASEVLSSLISTVHAKG 268
             +                  + + QAS+GLRQGDPLSPFLF L  +VLS L+       
Sbjct: 133 RKWMQGCLSSANFSVLINGRPRGKFQASRGLRQGDPLSPFLFTLVVDVLSRLMEKAQENH 192

[Close]
BLAST of Cucsa.356510 vs. NCBI nr
Match: gi|595799047|ref|XP_007201486.1| (hypothetical protein PRUPE_ppa016462mg, partial [Prunus persica])

HSP 1 Score: 148.7 bits (374), Expect = 1.5e-32
Identity = 82/179 (45.81%), Postives = 110/179 (61.45%), Query Frame = 1 

Query: 98  LNACVMENFICLIKKKDDASKVKDFRPTSLTTLTCKLVAKVLAEKLEKTMRSIIDPPHSA 157
           +N    E FICLI KK ++ KV D+RP SL T   K+++KVLA +L + + + I     A
Sbjct: 372 VNGVTNETFICLIPKKANSVKVTDYRPISLVTSLYKVISKVLASRLREVLGNTISQSQGA 431

Query: 158 FLEGRQIIDPILIANEAVEEYCAKKKKGWLIKLDLEKAFDRVDWG-----LFRKS-RTQA 217
           F++ RQI+D +L+ANE  EE   +K+KG + K+D EKA+D V+W      L RK    +A
Sbjct: 432 FVQKRQILDAVLVANEVAEEVRKQKRKGLVFKIDFEKAYDHVEWNFVDDVLDRKGFGFRA 491

Query: 218 SKGLRQGDPLSPFLFLLASEVLSSLISTVHAKGLFEGFIVGKDKAHVSVLQFADDTHIL 271
            +GLRQ DPLSPFLF L S+VL  +I       L  G + G D+  VS LQFADDT  L
Sbjct: 492 FRGLRQRDPLSPFLFTLVSDVLRRIIERAQDVNLVHGIVSGHDQVEVSHLQFADDTIFL 550

[Close]
BLAST of Cucsa.356510 vs. NCBI nr
Match: gi|658030603|ref|XP_008350747.1| (PREDICTED: uncharacterized protein LOC103414113 [Malus domestica])

HSP 1 Score: 147.1 bits (370), Expect = 4.4e-32
Identity = 85/203 (41.87%), Postives = 114/203 (56.16%), Query Frame = 1 

Query: 98   LNACVMENFICLIKKKDDASKVKDFRPTSLTTLTCKLVAKVLAEKLEKTMRSIIDPPHSA 157
            +NA   E FICLI KK D+ KV DFRP SL T   K++AK LA +L++ + S I     A
Sbjct: 1036 INAVTNETFICLIPKKSDSMKVTDFRPISLVTGLYKIMAKTLASRLKEVLGSTISQNQGA 1095

Query: 158  FLEGRQIIDPILIANEAVEEYCAKKKKGWLIKLDLEKAFDRV----------------DW 217
            F++ RQI+D +LIANE VEE   KK++G ++K+D EKA+D V                 W
Sbjct: 1096 FVKDRQILDAVLIANEVVEEVRQKKEEGLVLKIDFEKAYDHVEWRFLDEVLQRKSFGNRW 1155

Query: 218  GLFR-----------------KSRTQASKGLRQGDPLSPFLFLLASEVLSSLISTVHAKG 268
              +                  + + QAS+GLRQGDPLSPFLF L  +VLS L+       
Sbjct: 1156 RKWMQGCLSSANFSVLINGRPRGKFQASRGLRQGDPLSPFLFTLVVDVLSRLMEKAQENH 1215

The following BLAST results are available for this feature:
BLAST of Cucsa.356510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LORF2_HUMAN1.5e-0825.68LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1[more]
LORF2_MOUSE1.3e-0731.25LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2[more]
M1250_ARATH2.2e-0750.00Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg0... [more]
BLAST of Cucsa.356510 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BY79_VITVI4.7e-3340.87Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031264 PE=4 SV=1[more]
M5W794_PRUPE1.1e-3245.81Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016462mg PE=4 S... [more]
A5BQI4_VITVI4.0e-3241.35Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030910 PE=4 SV=1[more]
A5BN97_VITVI5.2e-3243.24Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009103 PE=4 SV=1[more]
A5BN18_VITVI5.8e-3138.46Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006980 PE=4 SV=1[more]
BLAST of Cucsa.356510 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG01250.11.2e-0850.00ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)[more]
AT4G20520.18.0e-0844.62 RNA binding;RNA-directed DNA polymerases[more]
BLAST of Cucsa.356510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|694414464|ref|XP_009335445.1|1.6e-3441.36PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri][more]
gi|147783561|emb|CAN68445.1|6.8e-3340.87hypothetical protein VITISV_031264 [Vitis vinifera][more]
gi|658048925|ref|XP_008360144.1|1.2e-3242.36PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|595799047|ref|XP_007201486.1|1.5e-3245.81hypothetical protein PRUPE_ppa016462mg, partial [Prunus persica][more]
gi|658030603|ref|XP_008350747.1|4.4e-3241.87PREDICTED: uncharacterized protein LOC103414113 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.356510.1Cucsa.356510.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 110..270
score: 3.1
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 106..237
score: 3.6
NoneNo IPR availablePANTHERPTHR19446:SF368SUBFAMILY NOT NAMEDcoord: 106..237
score: 3.6
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 92..234
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.356510Melon (DHL92) v3.6.1cgymedB575
Cucsa.356510Silver-seed gourdcarcgyB0613
Cucsa.356510Silver-seed gourdcarcgyB1085
Cucsa.356510Cucumber (Chinese Long) v3cgycucB542
Cucsa.356510Watermelon (97103) v2cgywmbB608
Cucsa.356510Wax gourdcgywgoB711
Cucsa.356510Cucurbita maxima (Rimu)cgycmaB0969
Cucsa.356510Cucurbita maxima (Rimu)cgycmaB0970
Cucsa.356510Cucurbita moschata (Rifu)cgycmoB0972
Cucsa.356510Cucurbita moschata (Rifu)cgycmoB0973
Cucsa.356510Wild cucumber (PI 183967)cgycpiB528
Cucsa.356510Cucumber (Chinese Long) v2cgycuB500
Cucsa.356510Melon (DHL92) v3.5.1cgymeB574
Cucsa.356510Watermelon (Charleston Gray)cgywcgB605
Cucsa.356510Watermelon (97103) v1cgywmB638
Cucsa.356510Cucurbita pepo (Zucchini)cgycpeB0927
Cucsa.356510Cucurbita pepo (Zucchini)cgycpeB0928
Cucsa.356510Bottle gourd (USVL1VR-Ls)cgylsiB573