Cucsa.349100.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCACGCACCGGTCTTTTGCTGTCGTCTCTCGTCGACGCCTTCCCTTCTCTTCCTAAAGCCCTAAACCCCGTCGTCGTCGAAGAAGAAGAAGAAGAAGAAGATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTTCTCTAACTTTTCTCAACTCTTCCTTCTTTCACACTCTCCATCACGCATTTCCTTCTTAACTCTTTTCTTCTTCTTCTTCTCTCAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGTGAGTCATTCCCACTGCCTCCTTATTATCTCTTTCTTTTAAATTTCTGGAACTCGAACATAGATTTAAATTATATTTACATGCTGGCGAGAATCGTTCTGCAAATTCAACTTCACTTCAAATTAGTAATAACAGTTCTCAATTTCTCTATACCATTACGAAGTTTGTTTGAAGTTTCGTTTTCCTTGAAGACAGCCTAATAAACTCTAATTTGAGGCCATATGCTTTGCATTTTCCCTTGAGTCATAAGAGTTTTAAATTTTATCATATTGAGGATTCAATTGTCGCTTTTAACCACAAGGATCAGATTTGAGTACTAATAGTTTTTTtCCCATAGAATTATGGCTGGTTACCACCTACCCGAGAGGACTTTTGAAAAGTAATGTTCCGTATCCTTTTTGTAAGGCAGAAGTTGGGGTCAAGATTTCTTTAGAGAGAACCCAGCTCACAGTGAATGAAGAGGTGGTTGTGGTTCATAGTTTTCACATCTTTTCTGCATATGATTGATAGATATGAGATGTTAGGCTATATAGAAAGTGATGACCTCCTTTGCCTTCTGTCTTGAGATTAACACTTATGTAGGCCGTAAATATAAAACCTGTTAGGGAGCTTACTGGTGTAAACCAATCAGTATTTTTTtCTTGAATCAAAATTGTGCCCTTTTACCAAGAGGACTACTATTTATACTAGTCTTTCTCTTAACCAGAAATAGCAAGCTTAACTAACTACTCTAACAGCTAACAACCAACTTTCCCAACATCCATATCAACTGAAAATTTACCCACATCACTCACGTTCCAAAATAAGCTCCACAAGAGAAGAACCCAACTGGATTAATTAGAGGCAAGCAGTTATTGTTGTTTTGTATAAAAAACAATAATTGTCAAATTGGAGTCAACCTTGAAGTTCACTGACATATGAGAAAAGATGCCGTCTGAATCAAGTTTCCAAAGCAGTCCATCCTTATAAGTGCTTAGCCTTATCAGATTGAGCTTAATAGAAAAAAGGATGCACTCTTTACTTTTCAATCTCCTAGTCTCCTCCTCAAGCCTACATCCCATAGACTCCTGTTTCTGTAGATTCTTAATTtCGGTTTTTGGAACATCAGTATCTTGTGAGAAATAGGAGTGTCTATCATCCAACCATCTTTCACAAATGTAATTGTCTCTCATGCCAACTTTGTCTACAATTAAATTACAAATTATCAATGGACCTTGGGTTTTGACAACTCCGTGGCTAACAATCAACTCCATGATCACGACCTTCTACATTTGTGAGCCATCGGATGGGATAAGAACAGCATTTACTCCATAAAACTTCTACACCAGTGCCACTGTATTATTAAGGTTAAATTGCATACATCTAGACTAATCTCCTATTAAAATGGACTGAATACACCAAGAAGGTTGCGCAAACAGACACTTGGTTACAACATCATAATATTTTTTACTTGTAGTGCTTTCTCATCTGAACTCATAAGTTTCCTCTTTATCTGTTTGTTTGGGGATAAAATGATTGGCAATTTATCTTGCTTCCACAAAAATGAAAGAAAATGGTTTCTGCTCTTTGTTTCCTTTTATTTTCTAGACATATAACAGTAGCTTTTCCGACCACAAATTTCAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAACAATAGAATCACTCGTATCAATCCAAATATTGGAGGTGAGCTTTCCATTATGCCTTCATAGTATTATATAGGCACTGTATGGTAACCATTTTGGTTTCGTGTTCTCTTTCAAAATATTATATTTTTTACTCTGAAAATTTTGTTTTGGTGAGTTTTCCACCTTTCATGAGAACACATTTGAAGTCTAAATCAAAATTCAAAAACAAAATCAAGATTTTAAAAATTACTCATTTTACTTCTCAAAATTTTtCTTGGCGTTTTCAAAACGATATTTAAGTGCAGGTGATGAATCAAGGAAATTATATGTGAAAGTATTGTTTACAAGCTTAATTTTCAAAAATAAAAAACCAAAAAACAAAATGGTTATTTGATGGGCTTTAGCAGTATTATTTTTGAAATTATGTTCTTAAAAAATCAATTGTCTTTGTTCATTTCAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGTAACTTTTTCCTGCATTTGGACCTTACTATTTAAGGAATGGCTTTAATTCTATACTTGTTTCTGCATTTTACATCGACAATCCAGAAACGTTTAGAAGAGAATTTCAGGTTTGATTCAAATTTTTTATCCGATGGGGTATTTTGAAAATGTTCTAACTTTTAGTATTTGTAAGTACGTAGACCTTGAGTTTTTTTTtATTGTATTTAATATGATATTTGACTCTAAGTTGTGTTTTGATTGTGCTAGTTTCTAACAAATCTTAAACTTCTTGCTATTTTTAGAAGTATTATGCAATCCATGTTCTATTGTTTATTAGAGACTAGAGAGGACACGTTTCCTGCGCATGATAAATGTGCATATGCTCATATGTTAATACCTAAAGAATACAAATGCATTCAGTTTTAATGTCCACAATCATGTGCCTGAGAATTAGTTTTTTGGCTAAAGAAATAAGAAGTAAAAATACTGAAGAAGTGCCTATAAATAGAGTTGAACTTTATTCTATTATAGTAGAACATCCGTGGACAACTAGGATGTGCACGTGTAAGAGTCACTATTTTTGGACAAGTAGGGTTCCACTCTACTTCATTCAACTCCGATTCAATGTGTATGCTTGGTTTAGAGTCTAATTTTGTTCTTGAATCTAATTGGTGCATACATACAAAAATTTCTTGTTGTGTTGGACTTTGGGCACTAGATATCCAATGCCTACTGCATCTCTTCATTTCTAAATGTCAAATGACAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGTGTGTACGCTATGAAAAAAaCTTAAGTTCACCTGCCTTTTCTTGTCTGGAGAAAGGTCAAGCTCTAAAACTTTTAGGGTAAAATGCACTTTTGGTCCAGAGTTCAGAGTCAAATTGCTGAGAAAAAAaTTGCTGAAGTTTCAAAACAGATATTTTAATCCATGAGGTCTAGTAAATAGTTCTATATAGTCCTTGACATTTTAATTCATAATGCTTACATGTGAAAAAAAaGTGTATTTTTCCGAACCTCTTTTGTTAACTACCATTTCCTCACGGTAAAAGTATAACAAGAAATGTATTTTTAGGGATTAAAAATTCAAATGGCATCACCTAATATATGGCTTTTGTACAAGTGTTTCACCATCACATGCTTCCTACAACATCTTCTGATCAATCCATTTTTCACATTACAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGTATGCTTCGTTTTCGTGTCTTCTACAGTCCCCCTCCTCAAAAGGAAAATGCAGGAGAAAAATCTCTATTTAAATGTTATGGGAGTAATAACGTGAGAAAACTCTTCTTTGTTGGCACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGTACCACAAACCTTTATGCCTCAGATCGGTTGTTTTCTTTGAGCATATTTCTTTCTTATACCTTTGACGATTTCTAGTTAACGATGTATATCATGTATGTTTTTCATTATTCTGTTTGTGGTTGTAGGAATAACAGTAGAAAACTATTGCTGTGACTACTGTGGTGGCTCATCTGTAAGTGTTCATCGGTAGCGATCCTGTCGTGCTGAGTTGTGGACATTTTTAAAAGAACCATTTGAGAAGTCTAAGCATGGCACTTCCCGGGCAGGGGATGTTAGGCGGATCTTTTGCTTCTCTTTGTAAGAGTTGGGTTCTCTTCTTCTTTTACTTTCTTTCATTTTTCCTTTTTCGGGTAAAGAATATTCTTAAAATATGTACGGAGATTTTGTTGTATTTACCACACTTTTGATGGCTTTTGAAATTTCCTTTACTTTAAAATATAATATGTAAAACGATTATTTAGCGTAGTGTGGGGTTTTGCCTCTTTTTTTtGTTCCTTTTATCTTCGAACATTGAAGTCAGAAAAAaGGAAAAGAAGAGAAAAAGTACAATTGGTTTTTTGTACATTTC TCCACGCACCGGTCTTTTGCTGTCGTCTCTCGTCGACGCCTTCCCTTCTCTTCCTAAAGCCCTAAACCCCGTCGTCGTCgaagaagaagaagaagaagaagaTGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAACAATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGAATAACAGTAGAAAACTATTGCTGTGACTACTGTGGTGGCTCATCTGTAAGTGTTCATCGGTAGCGATCCTGTCGTGCTGAGTTGTGGACATTTTTAAAAGAACCATTTGAGAAGTCTAAGCATGGCACTTCCCGGGCAGGGGATGTTAGGCGGATCTTTTGCTTCTCTTTGTAAGAGTTGGGTTCTCTTCTTCTTTTACTTTCTTTCATTTTTCCTTTTTCGGGTAAAGAATATTCTTAAAATATGTACGGAGATTTTGTTGTATTTACCACACTTTTGATGGCTTTTGAAATTTCCTTTACTTTAAAATATAATATGTAAAACGATTATTTAGCGTAGTGTGGGGTTTTGCCTCTTTTTTTTGTTCCTTTTATCTTCGAACATTGAAGTCAGAAAAAAGGAAAAGAAGAGAAAAAGTACAATTGGTTTTTTGTACATTTC ATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAACAATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGAATAA MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE*
BLAST of Cucsa.349100.1 vs. Swiss-Prot
Match: RU2A_ARATH (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2) HSP 1 Score: 370.2 bits (949), Expect = 2.1e-101 Identity = 191/239 (79.92%), Postives = 209/239 (87.45%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. Swiss-Prot
Match: RU2A_HUMAN (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2) HSP 1 Score: 226.5 bits (576), Expect = 3.7e-58 Identity = 128/238 (53.78%), Postives = 162/238 (68.07%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. Swiss-Prot
Match: RU2A_MACFA (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 3.7e-58 Identity = 128/238 (53.78%), Postives = 162/238 (68.07%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. Swiss-Prot
Match: RU2A_MOUSE (U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2) HSP 1 Score: 223.4 bits (568), Expect = 3.1e-57 Identity = 127/238 (53.36%), Postives = 161/238 (67.65%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. Swiss-Prot
Match: RU2A_CAEEL (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=mog-2 PE=1 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 3.7e-50 Identity = 110/238 (46.22%), Postives = 154/238 (64.71%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. TrEMBL
Match: E5GB46_CUCME (U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 530.4 bits (1365), Expect = 1.3e-147 Identity = 274/279 (98.21%), Postives = 274/279 (98.21%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. TrEMBL
Match: M5XHK1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018334mg PE=4 SV=1) HSP 1 Score: 434.9 bits (1117), Expect = 7.5e-119 Identity = 226/285 (79.30%), Postives = 243/285 (85.26%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. TrEMBL
Match: A0A059ADU7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01697 PE=4 SV=1) HSP 1 Score: 432.6 bits (1111), Expect = 3.7e-118 Identity = 222/287 (77.35%), Postives = 246/287 (85.71%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. TrEMBL
Match: U7DXL9_POPTR (U2 small nuclear ribonucleoprotein A OS=Populus trichocarpa GN=POPTR_0381s00210g PE=4 SV=1) HSP 1 Score: 432.6 bits (1111), Expect = 3.7e-118 Identity = 225/285 (78.95%), Postives = 245/285 (85.96%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. TrEMBL
Match: D7TFN0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00590 PE=4 SV=1) HSP 1 Score: 431.0 bits (1107), Expect = 1.1e-117 Identity = 221/287 (77.00%), Postives = 246/287 (85.71%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. TAIR10
Match: AT1G09760.1 (AT1G09760.1 U2 small nuclear ribonucleoprotein A) HSP 1 Score: 370.2 bits (949), Expect = 1.2e-102 Identity = 191/239 (79.92%), Postives = 209/239 (87.45%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. NCBI nr
Match: gi|778711690|ref|XP_004140564.2| (PREDICTED: U2 small nuclear ribonucleoprotein A', partial [Cucumis sativus]) HSP 1 Score: 538.9 bits (1387), Expect = 5.3e-150 Identity = 277/278 (99.64%), Postives = 277/278 (99.64%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. NCBI nr
Match: gi|659119954|ref|XP_008459932.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo]) HSP 1 Score: 530.4 bits (1365), Expect = 1.9e-147 Identity = 274/279 (98.21%), Postives = 274/279 (98.21%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. NCBI nr
Match: gi|645231236|ref|XP_008222301.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Prunus mume]) HSP 1 Score: 438.7 bits (1127), Expect = 7.5e-120 Identity = 229/286 (80.07%), Postives = 245/286 (85.66%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. NCBI nr
Match: gi|596228279|ref|XP_007224240.1| (hypothetical protein PRUPE_ppa018334mg, partial [Prunus persica]) HSP 1 Score: 434.9 bits (1117), Expect = 1.1e-118 Identity = 226/285 (79.30%), Postives = 243/285 (85.26%), Query Frame = 1
BLAST of Cucsa.349100.1 vs. NCBI nr
Match: gi|566256109|ref|XP_006388045.1| (U2 small nuclear ribonucleoprotein A' [Populus trichocarpa]) HSP 1 Score: 432.6 bits (1111), Expect = 5.4e-118 Identity = 225/285 (78.95%), Postives = 245/285 (85.96%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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