Cucsa.348890.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGGAAAAaGGTTGTTTTTCCGTGAGGGGACACCGACCTTTTTtATTGGTATCTTCCATTGCCAATCTCCTCATCATCTTCATCCACTTCTTCCTCCTCATAAACAATCAAATATCTTCTAAAACTCAACTAAATCCTAATTATGCTCCTCAAATCCTCTTCAACGCCGCTTCTTGGCTCTCTTCTCCCCCCGGATCACCACCACCATGACCTCCACGGGAAACACTCCCCTTCCACTTTCCCTTTCCACTGCAATAATAAACCGCTTTCTTTCTCCACCACCACTGCTTCTCTTAGCTCCTCCCCTGCTTTCTCCGACCACCATCGTGCCGCTGCTCCATCTGGCTTCCGGAGAACCAACTCTGAAGGGAATTTGAATACTGTTTCTCATGCTTCTGATGTAATCGATGTCCATGAAGATCCGTTTTCTTTTGATTCTGTCAATTTCAAATCTTCTAAGAAGTTTTGTCATGGCCTTAAACGCTCTATTCTCCAGACTATTCCCTCGTTTTCCTTCTACGGTTCTAGAGCTAGGACTGAGGAAGAGGAGGAGGAGGAGGATCGAGAGATTGATGGGAAGGAAGAGGAAGATGGTTTGGGGAATTTTAGCATTGACGCTGCCATTGTAACTCCGGAGGTTAGGGCTATGGAACAAGCTTGGAGTAGAGTGGGTGCTGGTGGTGATGGGATGGGATTTGTGGGTGATTTACGGAAAGAGATGTACCTGGCTAGAGGGCTCGGCATCGGAGGAGGACCGGGTGATGGTGGCGGTGGTGGTCGACTGCAGGGTGGAGGCGGCGGTGGGGGAGGAGGTGAAGAATATGGCATGGAGGAGTATTACAAGAAAATGGTGGTGGAGAATCCGAGCAATGCTCTTGTTTTAAGTAACTATGCAGAGTTCTTGTACCAGGCAAGTTCGTTTTACCCTTGTTTCCATTTCTCTACTATGCTATGAATTTTTTAGGCCAAACGGTAAACATTTTGGTTAGAATAACCATCACTCTTTTATTATAAATCTTCAATTCAGTCCTTTTGTTTTCCAAATTTATAGTAAAAAAaCAACAATACAAAAAGAAGATTTTTACAAAAATCAGCATTCAAAATTGGACAATTGATAGTACTAAAGAGCAAAACTGAAGAACTTCAAAGGAAAAGAAATGAAATTATATTTTATTTAACTTTTCAAAAAAAaTTAATGTTGTTCTATCAACCACCATAAATTGTACTAAAAAACAATCATTCAACGTGGAGTTTGTTATAATAGTTTGCACATACACATTATAGTATGTTAAGGGTAGACTATTTTAGTATAGGTTAAAAAGTTGAAGAGATTTTTCAAACAATTGAGAACTTCAATACCGATTCCGATTCCAATTCCAATTCCGCCCTTTCATATGGTCATAATTAGCGAGACAATCTAAAGGAATTTCTTTGCATATGATTTTGATCGCAGAGGAAAGGAGACCTGGGAAGAGCAGAAGAATATTACAGCAGAGCTATTTTAATGGATTCCCACGATGGAGAAACTTTGTCAAAATATGCCAAGTTAGTGTGGGAGTTGCATCATGACCAACAAAAAGCTTTATCCTATTTTCAAAGGGCTCTGCAAGCTTCTCCACTTGACAGGTACTCACTTCCCACCTTCATTCTATCTTTTCCCTCTTTACTATTTCACAACTAAGTCATCAACGGTAAATATACACAAACAACCTTGACTAGTGGTTTAAAGCACTTATTCTTTTGTTTAATATTCATGTGCACTGGTTGAACATGTATCAGACACTTGTTAGAGTAACAAATGTGTTAAACATGCATAGAATTTTCGTCAAGTAGATTAGAAAGATGAATAATACTAACTTTGTGTAAATACATTAAGCTAGGTTTTTTAAGCATATAAATGCATCAGAATGTCTAGATTTTTAAAACATGATGAGTCTTGTGTCCATGCCATGTCAGCTTAGATGGAGACTAGGTCAACAAGATATTAGTATAAACTGAATCCCTATGGTATAGCGCTTTTACTGTGTTAAGAATGAGAATAATAAGAAAGAAATGTTTGAGGAGGAAGATGCTATAATTTGATGCAAAAAAaTTTACATTGTGTGAATCTTTCAGCCACGTGCAAGCAGCCTATGCCAATTTCCTGTGGGAAACAGAAGAGAATGAAGATGAACAAAGCTTAGTTAAAGAGACAGCAACTAAAACTTACACGGCAGCAGCAACTGCTTGAGATGAAAGTGAATGGCAATGGCAACTTCTTTTTCTTGTTTCCTTCTTTGTAGAATAATCTCATCATCATTGATAATAAACATTGCTGCAACATTTTCAAATTTGTTCCAAGTTTCTGAAATGCAATGTTAGTGAAGAAACAAACAAGAATAAACAGAGGCAGTAGGGTGAAAGCAAACAAGTTTAAGTATAAGATTTAATGAAAAGGATAATTATCTCTCAAGTCTATTTCCCTCACATTGCCTAACAAGTGCTTGTACTTGAAATGCCAAAATTTCCCCACTTGAATTGCATCTTAAAAACCATCCAAGGGGgAAAAGTACCATCTTATCTTAATAATTAATTCCTCACAAATTAACATTTCCAGTAATGTCAACTCACACGCTCAAAAACACAAACTACAAACCAATTCCTAAACCACTCAACACCGGAGACGCTGCTTTTTCTCTGAACCATCAAACGTAGTAACCACCTTCCATATCAAAAACTCTTCCAAAGTTTCATCTCCATAATGGTTATAAACAAACTGGTACTGATTGATTGATGATACTATTGAACCTTGTGGTAACCCCGCTGAGGGAAACCGTTGCCTCTCAACCGACCATAGTCACTTCCGTCCTGGCTGCTTCCTCGACCCAAACTACGAGAACCAAATCGTCCTCTGGGGGCATCTGACTGGTAACTACCTCTCGCTCTGCCTCTTCCTGTTCATGGCA AAGGAAAAAGGTTGTTTTTCCGTGAGGGGACACCGACCTTTTTTATTGGTATCTTCCATTGCCAATCTCCTCATCATCTTCATCCACTTCTTCCTCCTCATAAACAATCAAATATCTTCTAAAACTCAACTAAATCCTAATTATGCTCCTCAAATCCTCTTCAACGCCGCTTCTTGGCTCTCTTCTCCCCCCGGATCACCACCACCATGACCTCCACGGGAAACACTCCCCTTCCACTTTCCCTTTCCACTGCAATAATAAACCGCTTTCTTTCTCCACCACCACTGCTTCTCTTAGCTCCTCCCCTGCTTTCTCCGACCACCATCGTGCCGCTGCTCCATCTGGCTTCCGGAGAACCAACTCTGAAGGGAATTTGAATACTGTTTCTCATGCTTCTGATGTAATCGATGTCCATGAAGATCCGTTTTCTTTTGATTCTGTCAATTTCAAATCTTCTAAGAAGTTTTGTCATGGCCTTAAACGCTCTATTCTCCAGACTATTCCCTCGTTTTCCTTCTACGGTTCTAGAGCTAGGACTgaggaagaggaggaggaggaggaTCGAGAGATTGATGGGAAGGAAGAGGAAGATGGTTTGGGGAATTTTAGCATTGACGCTGCCATTGTAACTCCGGAGGTTAGGGCTATGGAACAAGCTTGGAGTAGAGTGGGTGCTGGTGGTGATGGGATGGGATTTGTGGGTGATTTACGGAAAGAGATGTACCTGGCTAGAGGGCTCGGCATCGGAGGAGGACCGGGTGATGGTGGCGGTGGTGGTCGACTGCAGGGTGGAGGCGGCGGTGGGGGAGGAGGTGAAGAATATGGCATGGAGGAGTATTACAAGAAAATGGTGGTGGAGAATCCGAGCAATGCTCTTGTTTTAAGTAACTATGCAGAGTTCTTGTACCAGAGGAAAGGAGACCTGGGAAGAGCAGAAGAATATTACAGCAGAGCTATTTTAATGGATTCCCACGATGGAGAAACTTTGTCAAAATATGCCAAGTTAGTGTGGGAGTTGCATCATGACCAACAAAAAGCTTTATCCTATTTTCAAAGGGCTCTGCAAGCTTCTCCACTTGACAGCCACGTGCAAGCAGCCTATGCCAATTTCCTGTGGGAAACAGAAGAGAATGAAGATGAACAAAGCTTAGTTAAAGAGACAGCAACTAAAACTTACACGGCAGCAGCAACTGCTTGAGATGAAAGTGAATGGCAATGGCAACTTCTTTTTCTTGTTTCCTTCTTTGTAGAATAATCTCATCATCATTGATAATAAACATTGCTGCAACATTTTCAAATTTGTTCCAAGTTTCTGAAATGCAATGTTAGTGAAGAAACAAACAAGAATAAACAGAGGCAGTAGGGTGAAAGCAAACAAGTTTAAGTATAAGATTTAATGAAAAGGATAATTATCTCTCAAGTCTATTTCCCTCACATTGCCTAACAAGTGCTTGTACTTGAAATGCCAAAATTTCCCCACTTGAATTGCATCTTAAAAACCATCCAAGGGGGAAAAGTACCATCTTATCTTAATAATTAATTCCTCACAAATTAACATTTCCAGTAATGTCAACTCACACGCTCAAAAACACAAACTACAAACCAATTCCTAAACCACTCAACACCGGAGACGCTGCTTTTTCTCTGAACCATCAAACGTAGTAACCACCTTCCATATCAAAAACTCTTCCAAAGTTTCATCTCCATAATGGTTATAAACAAACTGGTACTGATTGATTGATGATACTATTGAACCTTGTGGTAACCCCGCTGAGGGAAACCGTTGCCTCTCAACCGACCATAGTCACTTCCGTCCTGGCTGCTTCCTCGACCCAAACTACGAGAACCAAATCGTCCTCTGGGGGCATCTGACTGGTAACTACCTCTCGCTCTGCCTCTTCCTGTTCATGGCA ATGCTCCTCAAATCCTCTTCAACGCCGCTTCTTGGCTCTCTTCTCCCCCCGGATCACCACCACCATGACCTCCACGGGAAACACTCCCCTTCCACTTTCCCTTTCCACTGCAATAATAAACCGCTTTCTTTCTCCACCACCACTGCTTCTCTTAGCTCCTCCCCTGCTTTCTCCGACCACCATCGTGCCGCTGCTCCATCTGGCTTCCGGAGAACCAACTCTGAAGGGAATTTGAATACTGTTTCTCATGCTTCTGATGTAATCGATGTCCATGAAGATCCGTTTTCTTTTGATTCTGTCAATTTCAAATCTTCTAAGAAGTTTTGTCATGGCCTTAAACGCTCTATTCTCCAGACTATTCCCTCGTTTTCCTTCTACGGTTCTAGAGCTAGGACTGAGGAAGAGGAGGAGGAGGAGGATCGAGAGATTGATGGGAAGGAAGAGGAAGATGGTTTGGGGAATTTTAGCATTGACGCTGCCATTGTAACTCCGGAGGTTAGGGCTATGGAACAAGCTTGGAGTAGAGTGGGTGCTGGTGGTGATGGGATGGGATTTGTGGGTGATTTACGGAAAGAGATGTACCTGGCTAGAGGGCTCGGCATCGGAGGAGGACCGGGTGATGGTGGCGGTGGTGGTCGACTGCAGGGTGGAGGCGGCGGTGGGGGAGGAGGTGAAGAATATGGCATGGAGGAGTATTACAAGAAAATGGTGGTGGAGAATCCGAGCAATGCTCTTGTTTTAAGTAACTATGCAGAGTTCTTGTACCAGAGGAAAGGAGACCTGGGAAGAGCAGAAGAATATTACAGCAGAGCTATTTTAATGGATTCCCACGATGGAGAAACTTTGTCAAAATATGCCAAGTTAGTGTGGGAGTTGCATCATGACCAACAAAAAGCTTTATCCTATTTTCAAAGGGCTCTGCAAGCTTCTCCACTTGACAGCCACGTGCAAGCAGCCTATGCCAATTTCCTGTGGGAAACAGAAGAGAATGAAGATGAACAAAGCTTAGTTAAAGAGACAGCAACTAAAACTTACACGGCAGCAGCAACTGCTTGA MLLKSSSTPLLGSLLPPDHHHHDLHGKHSPSTFPFHCNNKPLSFSTTTASLSSSPAFSDHHRAAAPSGFRRTNSEGNLNTVSHASDVIDVHEDPFSFDSVNFKSSKKFCHGLKRSILQTIPSFSFYGSRARTEEEEEEEDREIDGKEEEDGLGNFSIDAAIVTPEVRAMEQAWSRVGAGGDGMGFVGDLRKEMYLARGLGIGGGPGDGGGGGRLQGGGGGGGGGEEYGMEEYYKKMVVENPSNALVLSNYAEFLYQRKGDLGRAEEYYSRAILMDSHDGETLSKYAKLVWELHHDQQKALSYFQRALQASPLDSHVQAAYANFLWETEENEDEQSLVKETATKTYTAAATA*
BLAST of Cucsa.348890.1 vs. Swiss-Prot
Match: FOXD1_CHICK (Forkhead box protein D1 OS=Gallus gallus GN=FOXD1 PE=2 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.8e-09 Identity = 50/140 (35.71%), Postives = 65/140 (46.43%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. TrEMBL
Match: A0A0A0KA70_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088010 PE=4 SV=1) HSP 1 Score: 644.4 bits (1661), Expect = 7.9e-182 Identity = 313/315 (99.37%), Postives = 314/315 (99.68%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. TrEMBL
Match: A0A061DPH6_THECC (Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_003908 PE=4 SV=1) HSP 1 Score: 282.0 bits (720), Expect = 1.0e-72 Identity = 185/381 (48.56%), Postives = 231/381 (60.63%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. TrEMBL
Match: A0A061DWD9_THECC (Tetratricopeptide repeat-like superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_003908 PE=4 SV=1) HSP 1 Score: 282.0 bits (720), Expect = 1.0e-72 Identity = 185/381 (48.56%), Postives = 231/381 (60.63%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. TrEMBL
Match: A0A0D2M2D7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G237800 PE=4 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 1.5e-68 Identity = 175/389 (44.99%), Postives = 224/389 (57.58%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. TrEMBL
Match: A0A0B0NB65_GOSAR (Beta-lactamase hcpB OS=Gossypium arboreum GN=F383_16008 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 4.9e-67 Identity = 169/386 (43.78%), Postives = 220/386 (56.99%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. TAIR10
Match: AT1G80130.1 (AT1G80130.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 140.6 bits (353), Expect = 1.9e-33 Identity = 69/144 (47.92%), Postives = 101/144 (70.14%), Query Frame = 1
HSP 2 Score: 38.5 bits (88), Expect = 1.0e-02 Identity = 43/164 (26.22%), Postives = 63/164 (38.41%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. TAIR10
Match: AT4G17940.1 (AT4G17940.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 136.7 bits (343), Expect = 2.7e-32 Identity = 70/162 (43.21%), Postives = 99/162 (61.11%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. TAIR10
Match: AT5G20190.1 (AT5G20190.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 136.0 bits (341), Expect = 4.6e-32 Identity = 65/135 (48.15%), Postives = 92/135 (68.15%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. TAIR10
Match: AT4G32340.1 (AT4G32340.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 128.3 bits (321), Expect = 9.6e-30 Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. TAIR10
Match: AT1G04530.1 (AT1G04530.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 112.5 bits (280), Expect = 5.5e-25 Identity = 55/112 (49.11%), Postives = 79/112 (70.54%), Query Frame = 1
HSP 2 Score: 78.6 bits (192), Expect = 8.7e-15 Identity = 40/118 (33.90%), Postives = 68/118 (57.63%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. NCBI nr
Match: gi|778711625|ref|XP_004140576.2| (PREDICTED: uncharacterized protein LOC101206684 [Cucumis sativus]) HSP 1 Score: 718.4 bits (1853), Expect = 6.2e-204 Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. NCBI nr
Match: gi|659120013|ref|XP_008459965.1| (PREDICTED: uncharacterized protein LOC103498923 [Cucumis melo]) HSP 1 Score: 647.5 bits (1669), Expect = 1.3e-182 Identity = 320/354 (90.40%), Postives = 333/354 (94.07%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. NCBI nr
Match: gi|700191169|gb|KGN46373.1| (hypothetical protein Csa_6G088010 [Cucumis sativus]) HSP 1 Score: 644.4 bits (1661), Expect = 1.1e-181 Identity = 313/315 (99.37%), Postives = 314/315 (99.68%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. NCBI nr
Match: gi|590715332|ref|XP_007050165.1| (Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]) HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72 Identity = 185/381 (48.56%), Postives = 231/381 (60.63%), Query Frame = 1
BLAST of Cucsa.348890.1 vs. NCBI nr
Match: gi|590715335|ref|XP_007050166.1| (Tetratricopeptide repeat-like superfamily protein, putative isoform 2 [Theobroma cacao]) HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72 Identity = 185/381 (48.56%), Postives = 231/381 (60.63%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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