Cucsa.328050.2 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAACCTTACTGCACCGCCGTTAACAAATCGCTCAACTTCCTGTAGTTCCCGGCGACTTTCAATTATCCGGTGAAAGACCTTCACCAAATTTCCCTTTCCCACACAAATCCAGGCTGTACTGCAATTAGTATTTGATTTGTTAAACAACTCAACAATTCCTGAAGAAATCCAAGTGACTGATGAGAATTTGACAATTACAAAGCTTCTTTCAATTACGATACAAGTCACATAAAGGTCGGAGATCAATATTTGACGTTTTTTCGATTTGTTTCTGCTCCGGTGATCGGCGACCCGGCATAAGGCGGTGTTTCGAGGAGAGAATCCGGTGAAGAAGGAGGAGGAGCAGCAGATGTTTGTTTTGGTAAGTAATTTGAAGTTAGGTTTAGGGTAAGCGAAAGGTATATTAATTAGGGAGCGGAGTCTGGTAAGGCCATTTGTTTGTCTCTTCCTTTATTAATTGCAATGAAAGAGAGAGAGAGAGAGAAGGACGTTCTGTATAATCTGCCATGGCAGGTGACCTTTTTTTAGGCTGATAACAGAAATAGCCAAGCTCTCTCTGACTCTGTTCCACCATTTATTCAAATTTCACTCTCTTTTTCTCTCTGTTCCATAAATTCAATCACCAAACTAGGGCGCTCCTTTGCCCCATTTTTTCACTCTTCCTTTTAATACTATCAGGGGGTTTCTGCCTCAGCACATTTCTGCTTCAGGGTTTTACATGGAGGTTGATACTTTTTGTTTTTTCATAATTTCTTCTTTAACTCTGTGTATTATATTCTTGTTTGAATATTTGACTTCCCTGTCTGTTCATGTTTCTTTTTCTCATTCTCTGATGTTTTGAATTCTTTCTGTTAGTGTACTTTTTTTTtCCTCCATTAACAGCGAGGTGGAGGATGGGGGTTGATTTTGTTTCATCATTAGTTGAAGATAAAGGAGAATTGGTGGGGGAATTTTCTTTGTTTGAATAATCATTTTAAGTTATGATGTTTCTGTTGAAAGTTTTTGTTTGCTTTTGAAAAGTTCTTCCAACTTTTTTTACCACTCGTCTTTTTCTATTTTTATTATTATTTTTGAGTATTGGTAACAGGGCTTTGGATTCCCAGCACGTATAGCCCAGAGAACTTTTTTTtATTTTTATTTTGAACCAAGTTATCGTGTAACAATGACTTTGATCTGATTTTCTTGATTTACTCAAGCGTTCTGTGCTGAGATTATTGTTAATTTTCATTGAAATGTCACTGCCTTTTATGGTAAATTGCTAACATTAGTTAGCTGATTCTCTGTAGTTCTTAAATGAGTGATTCTGGAGGGTCCGGACCTTGGCACCTGCTCAATCACCTAGGAGCTGACAATGCTATTCATTGTATGTAACTGTTATAATAGTTGGGAAGGgAGGGGGGTCTTCTTTTGGCTTTTGGCTTTTGCCAGTTTGAACTCAAACTTTTCTCTTTATTATCATTAAAATAGATTTGCTTGTTCTGCTTCAGAATAATTGATATAATTACAATATCTGAGGGGAATATATAGGAATTGCTAATGGAGTAATGGGTCACAGTCACAGATTATGATCCATTTCTTGGAATGACTTTTTTCCTTCACTCTGTTATAACATCAAAGTGGCAATGAAGAAGTTGTGTTTGATTTCCAATCTTATAGTGGACTGCAAAGTTTTATATTTGTCTCTTCCTTTTAAGCTCAGTTTTTTTtCTTCTTCGTTCGTCCATTCATAGAAGTTTAGAAAGTTGTTGAATTTCTGTTTCAATAAATTCATGTTTTTTGGCAGGTTCATGCTATCTTTCATGAAGGTTTGAATCTCTTGAAGGTCCTTTTGCCTCCATGATTTGTTAGCTATGAAACTGGGTATTAACATTTTCCATTGCCTTGTATTCTACTTGATCTTTATCATTTTGGTGCTACTTACACTCATCAATCCACCGCTTTTTCAATTTGTTGTCCTAACTTGGATTTGTGATTATGTATATGCAGACAGTGACTCTTCATTTTACCATTCAATGACCAGCCCGAACGATGCTCCAGAATCTCTCGAATGCAATTACAGCAGTACTGTGTTGCAACACCGGGTCATGACTAATAATCCAACTGGCCTCTCATTTCAACAGAAGATAAACCAGGAAAATGTTGTTCAATCTTCACATTCTTCTTGTGATGGGAATAGTTGCATGATTACTAAGATTAACCGGTCGTCTACAGATGTTTTTGATGATAATAATGCTGAAGGTATTAGTGCATTTGGGGCATCATCCAATATGAAACCCTCATTCTCATATGTTGACAAAAGTGTCATGGAATGTCAAATGTCAAAAACGATAGTCTGTGACCAAGAAGTTAATGTCAATGATGTGAAGGATATTTGCATCGATGATGGGGTGGCTTCTCTGGAAAATTTCTTCTTTAAGAGTACGGCCGAGAAGTCAATCAGTAAAATCTCCCCTCTGGAGGAAGACCGGAACGAAGGATCTATAAAAGAAAAAGAGACTTCTTCTGAGGTGTCCAAGTTCATAGCAGATGATCGTAAAGTTTCTTTAGAAGATCACTTTGCCATGGACTGGACTACTCATAATGATGCGAAGGACTTGACACAGATAGAGGAAGAAAAACTCAATCTGAGCGAGCCAGAGCTTTTGATGCAAAAGCTTGTTAAAAGAAGTTACTCTTCCGAGTCTTTAGATAAAATAGGTCTGCAGGTATGCATATTTCTGGCCAAATTATTAATCATGTTCTGTCGTACACTACATGTTTGTTCTATTTTTAATCTGAATATATTGAAGGATGCTCGTTTTGACAAAACAATTTTAGCTCCAGTGGTCATGTTTGATGTGGATTGCATTTCTTTTAACTTCAGATATCTGGTGAAAAAaCAAATTTGGAAGACCCTTCTTCAGCTTCCAAATCTGTTGATTCTTGCAACGACACTCCTGCTTTGGACTCTGCAGCAGAACCACCCAAGGATAACATCCCAGCGCATCCTTCAGGTTATAATGATGAATTTGAGAATGGAAGTATTGCACTTACTTTCAATTCGATATCTCCAGTGGCAAATGGTGGAGAAGAACGTCAGGAGTGTTGTGGAAGAAGTGATTCTGTAATTGGAACTCAAGTTTTAACCAATCTGGAATATAGAACTTCAGATAGTAGACTACTTTCAAGTCAAAACATGCACGACATTGGCGAGTCTAGTTTCTCTGCCGTAGATCCACTAGCTAGTCTTGTTACTTACTCAGGGCCAGTAGCTTATTCTGGAAGCATCTCGCTTCGATCAGAAAGTAGCACAACTAGCACACGTTCTTTTGCCTTCCCTATGTAAGTCGCAATCTAACTTCACCTCTCAAGCTTCATCTTTATATATCCCTTTCTTAATTGTAATCTAAGGTAAATTGTATTTACTCTCTGGGTTTACAGATTACAGTCCGAATGGAATAGTAGCCCGGTTAAAATGGTAAAAGCTGAACGAAGGCATTACCGAAAGTATCGAGGTTGGAGGGAGGGACTTCTATGCTGCAAATTCTAACTGGTTCTGTGCTATTTCTAGAGTTAGACTCTGTTTGTGCATCATCCAAATTTATTTTCACACACATGTAAGTAGATGTATTATTTCCTGGAGGTTATGCATTTCATTCATAGTCATTCTTTACAGTTTGGCCTATTATGTGAAATTTAATGTATTTGTAATACTTCATATCTCTCTTTTCTCTGGAAAATTTCTCCAGTGGACCATATTTCTCCATTATACAAGGATGGCAAAGCATGAAATGGTTGCTCTGTT TGAACCTTACTGCACCGCCGTTAACAAATCGCTCAACTTCCTGTAGTTCCCGGCGACTTTCAATTATCCGGTGAAAGACCTTCACCAAATTTCCCTTTCCCACACAAATCCAGGCTGTACTGCAATTAGTATTTGATTTGTTAAACAACTCAACAATTCCTGAAGAAATCCAAGTGACTGATGAGAATTTGACAATTACAAAGCTTCTTTCAATTACGATACAAGTCACATAAAGGTCGGAGATCAATATTTGACGTTTTTTCGATTTGTTTCTGCTCCGGTGATCGGCGACCCGGCATAAGGCGGTGTTTCGAGGAGAGAATCCGGTGAAGAAGGAGGAGGAGCAGCAGATGTTTGTTTTGGTTCATGCTATCTTTCATGAAGGTTTGAATCTCTTGAAGGTCCTTTTGCCTCCATGATTTGTTAGCTATGAAACTGGACAGTGACTCTTCATTTTACCATTCAATGACCAGCCCGAACGATGCTCCAGAATCTCTCGAATGCAATTACAGCAGTACTGTGTTGCAACACCGGGTCATGACTAATAATCCAACTGGCCTCTCATTTCAACAGAAGATAAACCAGGAAAATGTTGTTCAATCTTCACATTCTTCTTGTGATGGGAATAGTTGCATGATTACTAAGATTAACCGGTCGTCTACAGATGTTTTTGATGATAATAATGCTGAAGGTATTAGTGCATTTGGGGCATCATCCAATATGAAACCCTCATTCTCATATGTTGACAAAAGTGTCATGGAATGTCAAATGTCAAAAACGATAGTCTGTGACCAAGAAGTTAATGTCAATGATGTGAAGGATATTTGCATCGATGATGGGGTGGCTTCTCTGGAAAATTTCTTCTTTAAGAGTACGGCCGAGAAGTCAATCAGTAAAATCTCCCCTCTGGAGGAAGACCGGAACGAAGGATCTATAAAAGAAAAAGAGACTTCTTCTGAGGTGTCCAAGTTCATAGCAGATGATCGTAAAGTTTCTTTAGAAGATCACTTTGCCATGGACTGGACTACTCATAATGATGCGAAGGACTTGACACAGATAGAGGAAGAAAAACTCAATCTGAGCGAGCCAGAGCTTTTGATGCAAAAGCTTGTTAAAAGAAGTTACTCTTCCGAGTCTTTAGATAAAATAGGTCTGCAGATATCTGGTGAAAAAACAAATTTGGAAGACCCTTCTTCAGCTTCCAAATCTGTTGATTCTTGCAACGACACTCCTGCTTTGGACTCTGCAGCAGAACCACCCAAGGATAACATCCCAGCGCATCCTTCAGGTTATAATGATGAATTTGAGAATGGAAGTATTGCACTTACTTTCAATTCGATATCTCCAGTGGCAAATGGTGGAGAAGAACGTCAGGAGTGTTGTGGAAGAAGTGATTCTGTAATTGGAACTCAAGTTTTAACCAATCTGGAATATAGAACTTCAGATAGTAGACTACTTTCAAGTCAAAACATGCACGACATTGGCGAGTCTAGTTTCTCTGCCGTAGATCCACTAGCTAGTCTTGTTACTTACTCAGGGCCAGTAGCTTATTCTGGAAGCATCTCGCTTCGATCAGAAAGTAGCACAACTAGCACACGTTCTTTTGCCTTCCCTATATTACAGTCCGAATGGAATAGTAGCCCGGTTAAAATGGTAAAAGCTGAACGAAGGCATTACCGAAAGTATCGAGGTTGGAGGGAGGGACTTCTATGCTGCAAATTCTAACTGGTTCTGTGCTATTTCTAGAGTTAGACTCTGTTTGTGCATCATCCAAATTTATTTTCACACACATGTAAGTAGATGTATTATTTCCTGGAGGTTATGCATTTCATTCATAGTCATTCTTTACAGTTTGGCCTATTATGTGAAATTTAATGTATTTGTAATACTTCATATCTCTCTTTTCTCTGGAAAATTTCTCCAGTGGACCATATTTCTCCATTATACAAGGATGGCAAAGCATGAAATGGTTGCTCTGTT ATGAAACTGGACAGTGACTCTTCATTTTACCATTCAATGACCAGCCCGAACGATGCTCCAGAATCTCTCGAATGCAATTACAGCAGTACTGTGTTGCAACACCGGGTCATGACTAATAATCCAACTGGCCTCTCATTTCAACAGAAGATAAACCAGGAAAATGTTGTTCAATCTTCACATTCTTCTTGTGATGGGAATAGTTGCATGATTACTAAGATTAACCGGTCGTCTACAGATGTTTTTGATGATAATAATGCTGAAGGTATTAGTGCATTTGGGGCATCATCCAATATGAAACCCTCATTCTCATATGTTGACAAAAGTGTCATGGAATGTCAAATGTCAAAAACGATAGTCTGTGACCAAGAAGTTAATGTCAATGATGTGAAGGATATTTGCATCGATGATGGGGTGGCTTCTCTGGAAAATTTCTTCTTTAAGAGTACGGCCGAGAAGTCAATCAGTAAAATCTCCCCTCTGGAGGAAGACCGGAACGAAGGATCTATAAAAGAAAAAGAGACTTCTTCTGAGGTGTCCAAGTTCATAGCAGATGATCGTAAAGTTTCTTTAGAAGATCACTTTGCCATGGACTGGACTACTCATAATGATGCGAAGGACTTGACACAGATAGAGGAAGAAAAACTCAATCTGAGCGAGCCAGAGCTTTTGATGCAAAAGCTTGTTAAAAGAAGTTACTCTTCCGAGTCTTTAGATAAAATAGGTCTGCAGATATCTGGTGAAAAAaCAAATTTGGAAGACCCTTCTTCAGCTTCCAAATCTGTTGATTCTTGCAACGACACTCCTGCTTTGGACTCTGCAGCAGAACCACCCAAGGATAACATCCCAGCGCATCCTTCAGGTTATAATGATGAATTTGAGAATGGAAGTATTGCACTTACTTTCAATTCGATATCTCCAGTGGCAAATGGTGGAGAAGAACGTCAGGAGTGTTGTGGAAGAAGTGATTCTGTAATTGGAACTCAAGTTTTAACCAATCTGGAATATAGAACTTCAGATAGTAGACTACTTTCAAGTCAAAACATGCACGACATTGGCGAGTCTAGTTTCTCTGCCGTAGATCCACTAGCTAGTCTTGTTACTTACTCAGGGCCAGTAGCTTATTCTGGAAGCATCTCGCTTCGATCAGAAAGTAGCACAACTAGCACACGTTCTTTTGCCTTCCCTATATTACAGTCCGAATGGAATAGTAGCCCGGTTAAAATGGTAAAAGCTGAACGAAGGCATTACCGAAAGTATCGAGGTTGGAGGGAGGGACTTCTATGCTGCAAATTCTAA MKLDSDSSFYHSMTSPNDAPESLECNYSSTVLQHRVMTNNPTGLSFQQKINQENVVQSSHSSCDGNSCMITKINRSSTDVFDDNNAEGISAFGASSNMKPSFSYVDKSVMECQMSKTIVCDQEVNVNDVKDICIDDGVASLENFFFKSTAEKSISKISPLEEDRNEGSIKEKETSSEVSKFIADDRKVSLEDHFAMDWTTHNDAKDLTQIEEEKLNLSEPELLMQKLVKRSYSSESLDKIGLQISGEKTNLEDPSSASKSVDSCNDTPALDSAAEPPKDNIPAHPSGYNDEFENGSIALTFNSISPVANGGEERQECCGRSDSVIGTQVLTNLEYRTSDSRLLSSQNMHDIGESSFSAVDPLASLVTYSGPVAYSGSISLRSESSTTSTRSFAFPILQSEWNSSPVKMVKAERRHYRKYRGWREGLLCCKF*
BLAST of Cucsa.328050.2 vs. TrEMBL
Match: A0A0A0KFP8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G370190 PE=4 SV=1) HSP 1 Score: 836.6 bits (2160), Expect = 1.3e-239 Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 1
BLAST of Cucsa.328050.2 vs. TrEMBL
Match: A0A0A0KQY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606850 PE=4 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 8.2e-48 Identity = 153/470 (32.55%), Postives = 231/470 (49.15%), Query Frame = 1
BLAST of Cucsa.328050.2 vs. TrEMBL
Match: B9RLG9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1466920 PE=4 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 5.3e-47 Identity = 164/501 (32.73%), Postives = 240/501 (47.90%), Query Frame = 1
BLAST of Cucsa.328050.2 vs. TrEMBL
Match: D7TA77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g00560 PE=4 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 8.5e-45 Identity = 153/453 (33.77%), Postives = 226/453 (49.89%), Query Frame = 1
BLAST of Cucsa.328050.2 vs. TrEMBL
Match: A0A151TRT8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_008982 PE=4 SV=1) HSP 1 Score: 177.6 bits (449), Expect = 3.3e-41 Identity = 128/345 (37.10%), Postives = 187/345 (54.20%), Query Frame = 1
BLAST of Cucsa.328050.2 vs. TAIR10
Match: AT2G03810.1 (AT2G03810.1 18S pre-ribosomal assembly protein gar2-related) HSP 1 Score: 114.0 bits (284), Expect = 2.3e-25 Identity = 95/341 (27.86%), Postives = 164/341 (48.09%), Query Frame = 1
HSP 2 Score: 56.6 bits (135), Expect = 4.4e-08 Identity = 39/139 (28.06%), Postives = 60/139 (43.17%), Query Frame = 1
BLAST of Cucsa.328050.2 vs. TAIR10
Match: AT1G13650.2 (AT1G13650.2 BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4)) HSP 1 Score: 67.8 bits (164), Expect = 1.9e-11 Identity = 62/218 (28.44%), Postives = 90/218 (41.28%), Query Frame = 1
BLAST of Cucsa.328050.2 vs. NCBI nr
Match: gi|449452821|ref|XP_004144157.1| (PREDICTED: uncharacterized protein LOC101217989 [Cucumis sativus]) HSP 1 Score: 860.9 bits (2223), Expect = 9.4e-247 Identity = 431/431 (100.00%), Postives = 431/431 (100.00%), Query Frame = 1
BLAST of Cucsa.328050.2 vs. NCBI nr
Match: gi|700192470|gb|KGN47674.1| (hypothetical protein Csa_6G370190 [Cucumis sativus]) HSP 1 Score: 836.6 bits (2160), Expect = 1.9e-239 Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 1
BLAST of Cucsa.328050.2 vs. NCBI nr
Match: gi|659089264|ref|XP_008445414.1| (PREDICTED: uncharacterized protein LOC103488449 isoform X1 [Cucumis melo]) HSP 1 Score: 798.1 bits (2060), Expect = 7.5e-228 Identity = 402/431 (93.27%), Postives = 414/431 (96.06%), Query Frame = 1
BLAST of Cucsa.328050.2 vs. NCBI nr
Match: gi|659089276|ref|XP_008445421.1| (PREDICTED: uncharacterized protein LOC103488449 isoform X2 [Cucumis melo]) HSP 1 Score: 778.1 bits (2008), Expect = 8.0e-222 Identity = 392/419 (93.56%), Postives = 402/419 (95.94%), Query Frame = 1
BLAST of Cucsa.328050.2 vs. NCBI nr
Match: gi|778705669|ref|XP_011655722.1| (PREDICTED: uncharacterized protein LOC101218906 isoform X3 [Cucumis sativus]) HSP 1 Score: 199.5 bits (506), Expect = 1.2e-47 Identity = 153/470 (32.55%), Postives = 231/470 (49.15%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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