Cucsa.327700.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGAGAATAGGTAAAGTTCAAATTGCGTTAATATAAAAAGGATGCTATGTGTATGTATGTATATATAGGCATAATTCTGATTGCCAAAGTCAAGCCAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTGTGGGAAGTTGTTATTGGGTTTGATAATGGCGGCCTCATTTGCTGCTCCGGCTCAGGGTTTGGTTCACCGTCAAAATCTGACGCTCTCATTTTCCAATTACAACTTCAAACCTACTCAGCTTCAGTTTCAGGGCACACTTTCTGCTAAATCCCAACCCCTCTCCTTCTCTTCTCAATTCAACCTTCTTAACCATCCTTCTTCCCCCAACAATCACCGTTCCTCTTTTGCTCACACCGCCGCCGTTCGCCACATCGCTGGCTCTCTTGCCAAAGCTGGTGGCCTTCGCTTTGCTGTGGTCATTTCTCTTTTCTCTTTTCTTTTTGTTGTTTTTTTCTCCCTCTTCTTCTAATTCATGATGTTTTGTTCGTTCTCTAGGGTACTTAGCCGTTTTTGTTCATCATTTTGAACTCTCAAGTTGTTTTTCCTTATCGTTTACCTAAAAACGTGTAGTAAATATAATGACGTCTCGTCTGAGGATTTATTCGCTTCTAAGCACCGTTCTATTGATTTGTTGCCTGCATTCAATTCAAAGATTATGCGACAATGATTAATATCTGTGATGTATTAAATTGAACTTCTTACAATTTTTGTCCATTCGGCTGTTCTTGTGACTTCTGTTATCATGAATCTAAACTGtAGTTTTTTTTTTTTTttGTTTACTCCCTTGTCATTTCTGTGTGTGGACTCGTGGGATTTAATCATAACATCAATGTTTATTCATGTTTGCATATCTTGTTAATGGGTTTTTGATTATTGAAAGAATTGTTTTGCTTTGATGAAGGTTGTGGGGCGGTTCAATGAAATTGTGACTAGGCCAATGCTCGAGGGAGCTTTGTCTACTTTCAAAAGTTATTCAGTTCAAGACGAGGATATTGATGTAAGTGTTTCATTATACAACATGTGAAACTCGCATCCTCTAGTGTTTTGCTAGTGTTGGAAACTGAGATTCATTTATTTTAATTAATCAAAACAGAAAACAGGTTCATGACCCCGTTAAGCATATGCCAAGCAAAGCAAGCTTGTGAATAAATATGTTTGGAACTAGCATTGTTTTAAAAGACTACTGAGACTCACGCCTCGAGGCCCACCTTGAGGCATGACTCTAACTTGTAGCCTTGAGACAAACACCTTCTTTGAATAAAAAGAGGGAAGCCACTTGTGGAAACACACCGTTGATCTAAGTCTCTACACGTCTAGTGATTTGAAGAATAATATGAATTTCTCTCTCTTATGAAATTTGAATGTTGAGTTCTGATAATTTGAACATTTTATATTTTTAATGATATTAACAGTGATGCTAAAGATGTCCTAAAATTTTTGTTTAAGTGGGAATTGACGAGAGTGGTTTTTTtAATATACTTTTATATGACTATTATGTTTAGCTATACTTTGTCGAATCAGTTCAAGATTTGTAAAATGTTTTTAGTTAAATTAGAAGTTGCCTCCTTGCCTCTTAGGAAGGGTCTAAAGTTGGCTTTTTAAAACATTGGAAACTAGATTTTGTGCTTGTCAGGAGTATAAGTAAACAAATTTAACTACATATTGTGGGTACAAGTAAAaTAGGGTGGCTGAATTTCATTGGCAGACAAGTAGAATACACCTTTCATCAGATTTGCATTGAGAGAGAACGTGTATCTGACCTTGCTAGTTGACAAACAGCTTAACTTTGCTTGACATATTGACTTTATTATTTACCTCGCTATCATATTAGGTTGTCTGGGTCCCAGGGAGCTTTGATATTCCTGTGGTTGCTCAAAGGCTTGGGCAATCTGGGAAGTACCATGCTGTCTTGTGCATTGGAGCTGTGGTATGATTTTCTGTAACATTTATCAAGTCCTTTTATATATTCTAGTCTTCAGTGCATTTATTAATACCATGACCCATTTCATTATGATAGATTAGAGGTGATACATCCCACTATGATGCCGTTGTAAATTGTTCTGCATCTGGAGTACTTTCTGCCGGTTTAAATTCAGGTTGGCTTTCTTTTTTTGGTAGTTTTGCAGAACGTTATATACTTTTATCCTATTAATTTAAGTTTTCTAACCAATTTTTGTTCTGTATTGCCTATCTTTTATGAGTTCAACTCAAGGCTTTTGATTTGCCATCATTTCTAGGAGTTTCTAAATTCTAAATATTGCAGTCGAGTTGACTTAACTATTCCAATTTTGACATCTATGAACCATGAGGGATTTAAGGAATATTGGGGTATGAAGAGGACAAGAAGCACCTGGTTGTTATAGATTTATATAAATTATGTGATTATGTGCACATTCCCAGCCTTTTATTGAAGAAAAAaTATTGGTTTCCCCGGTTAAAGCTTAACATTAATTTCATATGATAACATCAAAGGCCTTGGTTATTGGTCGAAGTATTTCCTTTTTATAATGGAACAGCAAGATTATAGGTTATATTTCAGTGAATCAAGACCCCTTTTAAAGCATTTCAATCTAAGCCTTAGTAATAGTTTGAGTTGTGGAACAATAATATGTTTAAGCTGTTGGGACTTGGGAGCTATAGTGAACTATGTTCTTGTATAACCGACATGAGAATATCTTTTACTCCTTATATGTGAAAACCTGTGTTAAAATTGTTGATAGTAATCTCTGTAACCGTATTTTTAGAGAAGTACCATTTATATCAATGCTTCCATCTTAGTTCTACTCTTTCTTCATCTTTGAGTTGTTGCTACATGAAGCTAAAGCCATTTTCTTATGCCTATGTAGGAGTTCCTTGCATATTTAGCGTCTTAACTTGTGACACCCTAGAACAGGTAAATATGATCTAAACTGACTGTTACAAGTATTTTCCTGCCTAGAGAATTGTTCTCAAAGGAGCTATGTGATTTCTGGTCATTACGTGCTTTTCACCACTTTTTAATTTGTGTGAAGGGTTTCGATCGAGCTGGCGGTAAAGTTGGAAATAAGGGATCTGAGGGTGCTTTGACAGCTGTAAGTTTTTTtAGTTAGTTTATAGTGTTCAAACCGTTGATTGTTCTAAGAAAAGAGACTGATTACTAACATATTTACTTTTCAAACGGTTTGCCAAAGCAGAAGTATACAGGAAAATTGTCTAATATGTGAACAAAAAGCACTAAATTCCTTTTCTTTCATGCGTATATATAGGTTTATATTTGACTGAATTTTATTGTCATTTGCAAGTGGTACCGCTAGGAATAGGATTTATCTTTTTAAACTTTATGATTATTATAATTATTTCCGATTTGTGAATCTTTTGTTATAAGATTTTGCATCATTTTGGCCAATTTTTCTCTTCTTCTACAGATGGAGCTGGCATCTATGTTTGAGCACGATCTGAAGTAGTCGAGATATAAGATCTAACAATTTCCATTATCCTTAGTTTTGCGGTTTCTTGCATTTCCCTGCTGTCCTTAGTAATGGTAGAATGCTTTCATTAAAAAAAAAAaaGAAGCCACATGATGGCTCAAACTGAAGTCAGCTGCAACTGGTCCAGAGGAAGTAGGAGGTTCCATGATTTCAATTTTCAAAGTTTCTTTGCTCAGCTTTGCCTTTTAACCGTTTATGTCAGAATAATGATATGAGGAATTTTATTTGTGGCATTGTGTGATTTGTGATGCACAATTAACAGAGTTTATATTATTGAAGAAGCCTTGGTGAATCATTAGTAAGTTCAACTCAGGGTGCTTTGATATTGATATTTTCTATTATTCAAATTCATCTTGTTTTCCAGGTTGACTCATTTGATTTTTTTCCCTGAAGACTGGAGCTGCTACAGCTTCCTTTCAAATCTCTTTCATTTCTCTCTTCTAATTAGTGTAAAACCGAGACATATGAGCCAATGTCTCGTTGAAACATACGTGGTCGATA TGGAGAATAGGTAAAGTTCAAATTGCGTTAATATAAAAAGGATGCTATGTGTATGTATGTATATATAGGCATAATTCTGATTGCCAAAGTCAAGCCAGcttcttcttcttcttcttcttcttcttcttcttcttcttcttcGTGTGGGAAGTTGTTATTGGGTTTGATAATGGCGGCCTCATTTGCTGCTCCGGCTCAGGGTTTGGTTCACCGTCAAAATCTGACGCTCTCATTTTCCAATTACAACTTCAAACCTACTCAGCTTCAGTTTCAGGGCACACTTTCTGCTAAATCCCAACCCCTCTCCTTCTCTTCTCAATTCAACCTTCTTAACCATCCTTCTTCCCCCAACAATCACCGTTCCTCTTTTGCTCACACCGCCGCCGTTCGCCACATCGCTGGCTCTCTTGCCAAAGCTGGTGGCCTTCGCTTTGCTGTGGTTGTGGGGCGGTTCAATGAAATTGTGACTAGGCCAATGCTCGAGGGAGCTTTGTCTACTTTCAAAAGTTATTCAGTTCAAGACGAGGATATTGATGTTGTCTGGGTCCCAGGGAGCTTTGATATTCCTGTGGTTGCTCAAAGGCTTGGGCAATCTGGGAAGTACCATGCTGTCTTGTGCATTGGAGCTGTGATTAGAGGTGATACATCCCACTATGATGCCGTTGTAAATTGTTCTGCATCTGGAGTACTTTCTGCCGGTTTAAATTCAGGAGTTCCTTGCATATTTAGCGTCTTAACTTGTGACACCCTAGAACAGGGTTTCGATCGAGCTGGCGGTAAAGTTGGAAATAAGGGATCTGAGGGTGCTTTGACAGCTATGGAGCTGGCATCTATGTTTGAGCACGATCTGAAGTAGTCGAGATATAAGATCTAACAATTTCCATTATCCTTAGTTTTGCGGTTTCTTGCATTTCCCTGCTGTCCTTAGTAATGGTAGAATGCTTTCATTAAAAAAAAAAAAGAAGCCACATGATGGCTCAAACTGAAGTCAGCTGCAACTGGTCCAGAGGAAGTAGGAGGTTCCATGATTTCAATTTTCAAAGTTTCTTTGCTCAGCTTTGCCTTTTAACCGTTTATGTCAGAATAATGATATGAGGAATTTTATTTGTGGCATTGTGTGATTTGTGATGCACAATTAACAGAGTTTATATTATTGAAGAAGCCTTGGTGAATCATTAGTAAGTTCAACTCAGGGTGCTTTGATATTGATATTTTCTATTATTCAAATTCATCTTGTTTTCCAGGTTGACTCATTTGATTTTTTTCCCTGAAGACTGGAGCTGCTACAGCTTCCTTTCAAATCTCTTTCATTTCTCTCTTCTAATTAGTGTAAAACCGAGACATATGAGCCAATGTCTCGTTGAAACATACGTGGTCGATA ATGTGTATGTATGTATATATAGGCATAATTCTGATTGCCAAAGTCAAGCCAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTGTGGGAAGTTGTTATTGGGTTTGATAATGGCGGCCTCATTTGCTGCTCCGGCTCAGGGTTTGGTTCACCGTCAAAATCTGACGCTCTCATTTTCCAATTACAACTTCAAACCTACTCAGCTTCAGTTTCAGGGCACACTTTCTGCTAAATCCCAACCCCTCTCCTTCTCTTCTCAATTCAACCTTCTTAACCATCCTTCTTCCCCCAACAATCACCGTTCCTCTTTTGCTCACACCGCCGCCGTTCGCCACATCGCTGGCTCTCTTGCCAAAGCTGGTGGCCTTCGCTTTGCTGTGGTTGTGGGGCGGTTCAATGAAATTGTGACTAGGCCAATGCTCGAGGGAGCTTTGTCTACTTTCAAAAGTTATTCAGTTCAAGACGAGGATATTGATGTTGTCTGGGTCCCAGGGAGCTTTGATATTCCTGTGGTTGCTCAAAGGCTTGGGCAATCTGGGAAGTACCATGCTGTCTTGTGCATTGGAGCTGTGATTAGAGGTGATACATCCCACTATGATGCCGTTGTAAATTGTTCTGCATCTGGAGTACTTTCTGCCGGTTTAAATTCAGGAGTTCCTTGCATATTTAGCGTCTTAACTTGTGACACCCTAGAACAGGGTTTCGATCGAGCTGGCGGTAAAGTTGGAAATAAGGGATCTGAGGGTGCTTTGACAGCTATGGAGCTGGCATCTATGTTTGAGCACGATCTGAAGTAG MCMYVYIGIILIAKVKPASSSSSSSSSSSSSSCGKLLLGLIMAASFAAPAQGLVHRQNLTLSFSNYNFKPTQLQFQGTLSAKSQPLSFSSQFNLLNHPSSPNNHRSSFAHTAAVRHIAGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDEDIDVVWVPGSFDIPVVAQRLGQSGKYHAVLCIGAVIRGDTSHYDAVVNCSASGVLSAGLNSGVPCIFSVLTCDTLEQGFDRAGGKVGNKGSEGALTAMELASMFEHDLK*
BLAST of Cucsa.327700.1 vs. Swiss-Prot
Match: RISB_ARATH (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g44050 PE=2 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 9.3e-67 Identity = 126/194 (64.95%), Postives = 155/194 (79.90%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. Swiss-Prot
Match: RISB_SPIOL (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 1.9e-64 Identity = 132/228 (57.89%), Postives = 163/228 (71.49%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. Swiss-Prot
Match: RISB_PELTS (6,7-dimethyl-8-ribityllumazine synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ribH PE=3 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.4e-38 Identity = 73/140 (52.14%), Postives = 101/140 (72.14%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. Swiss-Prot
Match: RISB_CLOB8 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=ribH PE=3 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 1.2e-37 Identity = 71/138 (51.45%), Postives = 103/138 (74.64%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. Swiss-Prot
Match: RISB_ANOFW (6,7-dimethyl-8-ribityllumazine synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=ribH PE=3 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 2.0e-37 Identity = 76/138 (55.07%), Postives = 101/138 (73.19%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. TrEMBL
Match: A0A0A0KGW6_CUCSA (6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis sativus GN=Csa_6G366300 PE=3 SV=1) HSP 1 Score: 513.8 bits (1322), Expect = 1.2e-142 Identity = 263/269 (97.77%), Postives = 263/269 (97.77%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. TrEMBL
Match: E7BRS1_CUCSA (6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis sativus PE=3 SV=1) HSP 1 Score: 454.9 bits (1169), Expect = 6.8e-125 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. TrEMBL
Match: B7SIS4_CUCSA (6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 450.7 bits (1158), Expect = 1.3e-123 Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. TrEMBL
Match: L0C9N6_MOMCH (6,7-dimethyl-8-ribityllumazine synthase OS=Momordica charantia PE=2 SV=1) HSP 1 Score: 374.8 bits (961), Expect = 8.9e-101 Identity = 188/228 (82.46%), Postives = 203/228 (89.04%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. TrEMBL
Match: U5FG99_POPTR (6,7-dimethyl-8-ribityllumazine synthase OS=Populus trichocarpa GN=POPTR_0017s00360g PE=3 SV=1) HSP 1 Score: 267.3 bits (682), Expect = 2.0e-68 Identity = 136/230 (59.13%), Postives = 167/230 (72.61%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. TAIR10
Match: AT2G44050.1 (AT2G44050.1 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase) HSP 1 Score: 255.0 bits (650), Expect = 5.2e-68 Identity = 126/194 (64.95%), Postives = 155/194 (79.90%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. NCBI nr
Match: gi|700192428|gb|KGN47632.1| (6,7-dimethyl-8-ribityllumazine synthase [Cucumis sativus]) HSP 1 Score: 513.8 bits (1322), Expect = 1.8e-142 Identity = 263/269 (97.77%), Postives = 263/269 (97.77%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. NCBI nr
Match: gi|311701739|gb|ADQ00634.1| (6,7-dimethyl-8-ribityllumazine synthase [Cucumis sativus]) HSP 1 Score: 454.9 bits (1169), Expect = 9.8e-125 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. NCBI nr
Match: gi|821595313|ref|NP_001295819.1| (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Cucumis sativus]) HSP 1 Score: 450.7 bits (1158), Expect = 1.8e-123 Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. NCBI nr
Match: gi|659089595|ref|XP_008445594.1| (PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic, partial [Cucumis melo]) HSP 1 Score: 428.7 bits (1101), Expect = 7.5e-117 Identity = 214/226 (94.69%), Postives = 221/226 (97.79%), Query Frame = 1
BLAST of Cucsa.327700.1 vs. NCBI nr
Match: gi|429537127|gb|AFZ99646.1| (lumazine synthase [Momordica charantia]) HSP 1 Score: 374.8 bits (961), Expect = 1.3e-100 Identity = 188/228 (82.46%), Postives = 203/228 (89.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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