Cucsa.322400.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.322400.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Acyl-CoA-binding protein
Location	scaffold03080 : 2161847 .. 2163967 (+)
Sequence length	553

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGGCGATTTTTTCCCTTTCAATTCCGATCACGTCCGTCGCTCGTCTATTTATAAGAGTTCAATTCTCGTCGTTCTTCTCAGTAGCATTTCGCAACTGTAATCGAGCTTCAAACGTAAGCAACCAAGAAGAATCACCATGGGTTTGAAGGTATATTCCTCTCTCTTCTTTCTTCTCAACTCTCAATTTCTTTAGATTATTACCTTCCAATCCCTCTTTCCCTCTTTTTCTGCAAATTTTTtGTTCGATCAGTACTTGGGTTCTTCGTTTATAGTGACTGATTCGTTACCGAATGATAATAGTTTTAGCTTTTTATTAGTTATGATATTGGAATTAAATTGAGCAATTTCTGCATAGTCGTGCATTGCTAGTATGTTGGATTCGGTAGCCTTCCTTGGAATGCCTTTTGTTGGATTTATCTTTTCGGATCTGTTTTTAATTCTATCTGTGTTGTCATCAGAATGGAGACGTCGAAATCTGGTAGTTTCCAGATCGATAGTCGTGAAAAAACTATGGAGATATGGTGATATTGCTCCTTGTCTATTTTAAAGATTATATTATACAGCTTCGTTCTCTTTCTGTTCATTCTTTTTCCTGGTTTAGTTTGCATGGATGTAATGTGACGACGATAGCTAAAATTAGGTCGGGTCGAAACTTAGATCCGAGATTGGAAATGGCTTCATGATCTTTTCTTTGCAATCTCCGCCACTCTTCCTTTTtCCGGAAAAaGTGGAATGATAAGGCAAAAGTGGTTTTCCAAGGAGAATATACCATTTCATGACTTTGAGTAATGTTTGAGTTAGATCAAGGACACCGGTGACTGTAGTATTTTGCAGTTGTTGGAATGCGGACTCCATTTATTCCTGTTTCTTTTTGTTGTTTCCAAATTGATTGCTTGAACTCGTGCTTGATCACTGGATTTGTTGGATAATATGATATTAAAAATTTGCTTTCACCCATCTGCTTAAACTTTTGGATAGATGGGTAACCGTATTAGAGCCGGTGGTCTCTAGGAGGTTCTATCTTCAAATCTTTGCAATAGCGTTACATGATATGATTTTAAACCTATTCACCCATAAGTACTTTCGGTGATTTAACAAGATTATTACCGTATAACGAAACTGTAGATGTTAGGGTAATAGGTACTGAAAATTCTAAAAACAAGAAATATTTGCTATGTTCTACAGAGATAAAGCTTGTAGTTTGTATCATAACTTAATGAGGCTGAGTTTTGCAGGAGGACTTTGAGGAGTATGCTGAGAAAGCAAAGACCTTGCCAGAGAACACAACCAATGAAAACAAACTCATTCTCTATGGACTATACAAGCAGGCCACTGTTGGACCCGTTACCACTTGTAAGTTCTTTCTTTCACTGAGTGGAATTTCTAAAGAAAATTGTTTATAGTTGGAATTATGTGATCAAATTCTCCAATTTAACTGTTTATTGCATTTATGATCGATTTATAGCCCGACCTGGAATGTTCAGCCAGAAGGAAAGAGCCAAATGGGATGCGTGGAAGGCTGTTGAAGGTAATTATCTGAATATTTAAACACCTGTGAGAATATTTTTGTTTGTTGTTCTTTAGGGGAAAACCTTCATGTCAGTGTTTCTGTATTTGGGGAGCTTTGGGTTGTGAAATTGAGAATATATATTGATGAATTCAGCACTATGAAATGGATCTTTTCTATTTTTTTATGACATTAAGGGGCATTTGGTTTAACTAACTTTTAGAGTGGAAAACTTTTTAAGTAAAATATACTTTTTTCTCAGATTAATTCAATAAGACACTAAAATATGTTTAATCTTTACTGGGAATGAACTCTTCTTTAAGTTTTACCCAATTCTAAAATGTACAAGAATGAGCTAAAATTGAAGAGAATCAAATATTTTCTTTGCAGCAAAATCCAAGGAAGATGCAATGAATGACTACATCACCAAGGTGAAACAATTGCAAGAGGCAGCTGCTGCTAGCTGATGAGTTTCTTGATTACCTGTATGAACAATGATGTTGAAATAATCCTTGTTTTAAGTTCAGTACTTTAATCGTATTTATCTAAGTTGTGTAACAATGAACTATGTGCAAGTATTATCAGTCATATTTAGCAAATGCGTCTTCAACCC

mRNA sequence

TCGGCGATTTTTTCCCTTTCAATTCCGATCACGTCCGTCGCTCGTCTATTTATAAGAGTTCAATTCTCGTCGTTCTTCTCAGTAGCATTTCGCAACTGTAATCGAGCTTCAAACGTAAGCAACCAAGAAGAATCACCATGGGTTTGAAGGAGGACTTTGAGGAGTATGCTGAGAAAGCAAAGACCTTGCCAGAGAACACAACCAATGAAAACAAACTCATTCTCTATGGACTATACAAGCAGGCCACTGTTGGACCCGTTACCACTTCCCGACCTGGAATGTTCAGCCAGAAGGAAAGAGCCAAATGGGATGCGTGGAAGGCTGTTGAAGCAAAATCCAAGGAAGATGCAATGAATGACTACATCACCAAGGTGAAACAATTGCAAGAGGCAGCTGCTGCTAGCTGATGAGTTTCTTGATTACCTGTATGAACAATGATGTTGAAATAATCCTTGTTTTAAGTTCAGTACTTTAATCGTATTTATCTAAGTTGTGTAACAATGAACTATGTGCAAGTATTATCAGTCATATTTAGCAAATGCGTCTTCAACCC

Coding sequence (CDS)

ATGGGTTTGAAGGAGGACTTTGAGGAGTATGCTGAGAAAGCAAAGACCTTGCCAGAGAACACAACCAATGAAAACAAACTCATTCTCTATGGACTATACAAGCAGGCCACTGTTGGACCCGTTACCACTTCCCGACCTGGAATGTTCAGCCAGAAGGAAAGAGCCAAATGGGATGCGTGGAAGGCTGTTGAAGCAAAATCCAAGGAAGATGCAATGAATGACTACATCACCAAGGTGAAACAATTGCAAGAGGCAGCTGCTGCTAGCTGA

Protein sequence

MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAWKAVEAKSKEDAMNDYITKVKQLQEAAAAS*

Homology

[Close]

BLAST of Cucsa.322400.1 vs. Swiss-Prot
Match: ACBP_RICCO (Acyl-CoA-binding protein OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-37
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKEDFEE+AEKAKTLPENTTNENKLILYGLYKQATVGPV TSRPGMF+ ++RAKWDAW
Sbjct: 1  MGLKEDFEEHAEKAKTLPENTTNENKLILYGLYKQATVGPVNTSRPGMFNMRDRAKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
          KAVE KS E+AM+DYITKVKQL   AAAS
Sbjct: 61 KAVEGKSTEEAMSDYITKVKQLLGEAAAS 89

[Close]

BLAST of Cucsa.322400.1 vs. Swiss-Prot
Match: ACBP_FRIAG (Acyl-CoA-binding protein OS=Fritillaria agrestis GN=ACABP PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-34
Identity = 70/87 (80.46%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          M LKE+FEE+A KAKTLPE+T+NENKLILYGLYKQ+TVGPV T RPGMFS +ERAKWDAW
Sbjct: 1  MALKEEFEEHAVKAKTLPESTSNENKLILYGLYKQSTVGPVDTGRPGMFSPRERAKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAA 88
          KAVE KSKE+AM DYITKVKQL E +A
Sbjct: 61 KAVEGKSKEEAMGDYITKVKQLLEESA 87

[Close]

BLAST of Cucsa.322400.1 vs. Swiss-Prot
Match: ACBP_BRANA (Acyl-CoA-binding protein OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-33
Identity = 70/89 (78.65%), Postives = 78/89 (87.64%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKEDFEE+AEK K L  + +NE+ LILYGLYKQATVGPVTTSRPGMFS KERAKWDAW
Sbjct: 1  MGLKEDFEEHAEKVKKLTASPSNEDLLILYGLYKQATVGPVTTSRPGMFSMKERAKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
          KAVE KS ++AM+DYITKVKQL EA A+S
Sbjct: 61 KAVEGKSTDEAMSDYITKVKQLLEAEASS 89

[Close]

BLAST of Cucsa.322400.1 vs. Swiss-Prot
Match: ACBP_GOSHI (Acyl-CoA-binding protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-32
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKE+FEE+AEK KTLP   +N++ LILYGLYKQATVGPV TSRPGMF+ +E+ KWDAW
Sbjct: 1  MGLKEEFEEHAEKVKTLPAAPSNDDMLILYGLYKQATVGPVNTSRPGMFNMREKYKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
          KAVE KSKE+AM DYITKVKQL EAA +S
Sbjct: 61 KAVEGKSKEEAMGDYITKVKQLFEAAGSS 89

[Close]

BLAST of Cucsa.322400.1 vs. Swiss-Prot
Match: ACBP6_ARATH (Acyl-CoA-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=ACBP6 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.2e-32
Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKE+FEE+AEK  TL E  +NE+ LILYGLYKQA  GPV TSRPGMFS KERAKWDAW
Sbjct: 1  MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVDTSRPGMFSMKERAKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAA 89
          KAVE KS E+AMNDYITKVKQL E AA+
Sbjct: 61 KAVEGKSSEEAMNDYITKVKQLLEVAAS 88

[Close]

BLAST of Cucsa.322400.1 vs. TrEMBL
Match: A0A0A0L140_CUCSA (Acyl-CoA-binding protein OS=Cucumis sativus GN=Csa_3G004510 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.1e-42
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKEDFEEYAEKAKTLPE+TTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW
Sbjct: 1  MGLKEDFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
          KAVEAKSKEDAMNDYITKVKQLQEAAAAS
Sbjct: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 89

[Close]

BLAST of Cucsa.322400.1 vs. TrEMBL
Match: A0A0B0NLB6_GOSAR (Acyl-CoA-binding OS=Gossypium arboreum GN=F383_04422 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.1e-38
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKE+FEEYAEKAKTLPENTTN++KLILYGLYKQATVGPV TSRPGMF+ KE+ KWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTTNDDKLILYGLYKQATVGPVNTSRPGMFNMKEKYKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
          KAVE KSKE+AMNDYITKVKQLQEAAAAS
Sbjct: 61 KAVEGKSKEEAMNDYITKVKQLQEAAAAS 89

[Close]

BLAST of Cucsa.322400.1 vs. TrEMBL
Match: A0A0D2SPR6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G349800 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-37
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKE+FEEYAEKAKTLPENTTN++KLILYGL+KQATVGPV TSRPGMF+ KE+ KWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTTNDDKLILYGLFKQATVGPVNTSRPGMFNMKEKYKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
          KAVE KSKE+AMNDYITKVKQLQEAAAAS
Sbjct: 61 KAVEGKSKEEAMNDYITKVKQLQEAAAAS 89

[Close]

BLAST of Cucsa.322400.1 vs. TrEMBL
Match: K9ZUG4_VERFO (Acyl-CoA binding protein 6 OS=Vernicia fordii GN=ACBP6 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.2e-37
Identity = 77/89 (86.52%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKE+FEEYAEKAKTLPENTTNENKLILYGLYKQATVGPV TSRPG+F+Q++RAKWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVNTSRPGIFNQRDRAKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
          KAVE KSKE+AM+DYITKVKQL E AAA+
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQLLEEAAAA 89

[Close]

BLAST of Cucsa.322400.1 vs. TrEMBL
Match: M0SQ12_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.8e-37
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKE+FEEYAEKAKTLPENTTNENKLILYGLYKQATVGPV TSRPG+F+Q++RAKWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
           AVE KSKEDAM+DYITKVKQL E AAA+
Sbjct: 61 MAVEGKSKEDAMSDYITKVKQLLEEAAAA 89

[Close]

BLAST of Cucsa.322400.1 vs. TAIR10
Match: AT1G31812.1 (AT1G31812.1 acyl-CoA-binding protein 6)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-33
Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKE+FEE+AEK  TL E  +NE+ LILYGLYKQA  GPV TSRPGMFS KERAKWDAW
Sbjct: 1  MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVDTSRPGMFSMKERAKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAA 89
          KAVE KS E+AMNDYITKVKQL E AA+
Sbjct: 61 KAVEGKSSEEAMNDYITKVKQLLEVAAS 88

[Close]

BLAST of Cucsa.322400.1 vs. TAIR10
Match: AT5G53470.1 (AT5G53470.1 acyl-CoA binding protein 1)

HSP 1 Score: 63.2 bits (152), Expect = 9.7e-11
Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 1


Query: 11  AEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAWKAVEAKSKED 70
           A  +  L +  +NE +L LYGLYK AT GP T  +P       RAKW AW+ + A   E+
Sbjct: 107 AAASDRLSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEE 166

Query: 71  AMNDYITKVKQLQEA 86
           AM  YI  V QL  A
Sbjct: 167 AMEKYIDLVTQLYPA 181

[Close]

BLAST of Cucsa.322400.1 vs. TAIR10
Match: AT4G27780.1 (AT4G27780.1 acyl-CoA binding protein 2)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 29/69 (42.03%), Postives = 37/69 (53.62%), Query Frame = 1


Query: 14  AKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAWKAVEAKSKEDAMN 73
           A  L +   ++ +  LYGLYK AT GP T  +P       RAKW AW+ + A   E+AM 
Sbjct: 120 ADRLSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAME 179

Query: 74  DYITKVKQL 83
            YI  V QL
Sbjct: 180 KYIEIVTQL 188

[Close]

BLAST of Cucsa.322400.1 vs. TAIR10
Match: AT3G05420.2 (AT3G05420.2 acyl-CoA binding protein 4)

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-06
Identity = 21/63 (33.33%), Postives = 36/63 (57.14%), Query Frame = 1


Query: 14 AKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAWKAVEAKSKEDAMN 73
          AK +     ++  L+LY LY+QATVGP  T +P  +   E++KW +W+ +      +AM 
Sbjct: 32 AKNVISKFPDDTALLLYALYQQATVGPCNTPKPSAWRPVEQSKWKSWQGLGTMPSIEAMR 91

Query: 74 DYI 77
           ++
Sbjct: 92 LFV 94

[Close]

BLAST of Cucsa.322400.1 vs. TAIR10
Match: AT5G27630.1 (AT5G27630.1 acyl-CoA binding protein 5)

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-06
Identity = 24/71 (33.80%), Postives = 42/71 (59.15%), Query Frame = 1


Query: 15  KTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAWKAVEAKSKEDAMND 74
           K L    +N+  L+LY L++QAT+GP +  +P  ++  E++KW +W+ +      +AM  
Sbjct: 34  KQLSSKFSNDTSLLLYTLHQQATLGPCSIPKPSAWNPVEQSKWKSWQGLGTMPSIEAMRL 93

Query: 75  YITKVKQLQEA 86
           +   VK L+EA
Sbjct: 94  F---VKILEEA 101

[Close]

BLAST of Cucsa.322400.1 vs. NCBI nr
Match: gi|449456781|ref|XP_004146127.1| (PREDICTED: acyl-CoA-binding protein [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.5e-42
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKEDFEEYAEKAKTLPE+TTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW
Sbjct: 1  MGLKEDFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
          KAVEAKSKEDAMNDYITKVKQLQEAAAAS
Sbjct: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 89

[Close]

BLAST of Cucsa.322400.1 vs. NCBI nr
Match: gi|659095442|ref|XP_008448583.1| (PREDICTED: acyl-CoA-binding protein [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 7.7e-42
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKEDFEEYAEKAKTLPENT+NENKLILYGLYKQATVGPVTTSRPGMF+QKERAKWDAW
Sbjct: 1  MGLKEDFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVTTSRPGMFNQKERAKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
          KAVEAKSKEDAMNDYITKVKQLQEAAAAS
Sbjct: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 89

[Close]

BLAST of Cucsa.322400.1 vs. NCBI nr
Match: gi|728833171|gb|KHG12614.1| (Acyl-CoA-binding [Gossypium arboreum])

HSP 1 Score: 164.5 bits (415), Expect = 8.8e-38
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKE+FEEYAEKAKTLPENTTN++KLILYGLYKQATVGPV TSRPGMF+ KE+ KWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTTNDDKLILYGLYKQATVGPVNTSRPGMFNMKEKYKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
          KAVE KSKE+AMNDYITKVKQLQEAAAAS
Sbjct: 61 KAVEGKSKEEAMNDYITKVKQLQEAAAAS 89

[Close]

BLAST of Cucsa.322400.1 vs. NCBI nr
Match: gi|743862792|ref|XP_010943634.1| (PREDICTED: acyl-CoA-binding protein [Elaeis guineensis])

HSP 1 Score: 163.7 bits (413), Expect = 1.5e-37
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKE+FEEYAEKAKTLPENT NENKLILYGLYKQATVGPV TSRPGMF+ K+RAKWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTANENKLILYGLYKQATVGPVNTSRPGMFNWKDRAKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
          KAVE KSKEDAM+DYITKVKQLQE AAA+
Sbjct: 61 KAVEGKSKEDAMSDYITKVKQLQEEAAAA 89

[Close]

BLAST of Cucsa.322400.1 vs. NCBI nr
Match: gi|823199218|ref|XP_012434840.1| (PREDICTED: acyl-CoA-binding protein-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVTTSRPGMFSQKERAKWDAW 60
          MGLKE+FEEYAEKAKTLPENTTN++KLILYGL+KQATVGPV TSRPGMF+ KE+ KWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTTNDDKLILYGLFKQATVGPVNTSRPGMFNMKEKYKWDAW 60

Query: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 90
          KAVE KSKE+AMNDYITKVKQLQEAAAAS
Sbjct: 61 KAVEGKSKEEAMNDYITKVKQLQEAAAAS 89

The following BLAST results are available for this feature:

BLAST of Cucsa.322400.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ACBP_RICCO	1.1e-37	85.39	Acyl-CoA-binding protein OS=Ricinus communis PE=3 SV=1	[more]
ACBP_FRIAG	2.0e-34	80.46	Acyl-CoA-binding protein OS=Fritillaria agrestis GN=ACABP PE=3 SV=1	[more]
ACBP_BRANA	1.7e-33	78.65	Acyl-CoA-binding protein OS=Brassica napus PE=3 SV=1	[more]
ACBP_GOSHI	1.1e-32	75.28	Acyl-CoA-binding protein OS=Gossypium hirsutum PE=3 SV=1	[more]
ACBP6_ARATH	4.2e-32	77.27	Acyl-CoA-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=ACBP6 PE...	[more]

BLAST of Cucsa.322400.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L140_CUCSA	3.1e-42	98.88	Acyl-CoA-binding protein OS=Cucumis sativus GN=Csa_3G004510 PE=4 SV=1	[more]
A0A0B0NLB6_GOSAR	6.1e-38	88.76	Acyl-CoA-binding OS=Gossypium arboreum GN=F383_04422 PE=4 SV=1	[more]
A0A0D2SPR6_GOSRA	1.8e-37	87.64	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G349800 PE=4 SV=1	[more]
K9ZUG4_VERFO	5.2e-37	86.52	Acyl-CoA binding protein 6 OS=Vernicia fordii GN=ACBP6 PE=2 SV=1	[more]
M0SQ12_MUSAM	8.8e-37	86.52	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]

BLAST of Cucsa.322400.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31812.1	2.4e-33	77.27	acyl-CoA-binding protein 6	[more]
AT5G53470.1	9.7e-11	44.00	acyl-CoA binding protein 1	[more]
AT4G27780.1	1.2e-08	42.03	acyl-CoA binding protein 2	[more]
AT3G05420.2	1.5e-06	33.33	acyl-CoA binding protein 4	[more]
AT5G27630.1	1.9e-06	33.80	acyl-CoA binding protein 5	[more]

BLAST of Cucsa.322400.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456781\|ref\|XP_004146127.1\|	4.5e-42	98.88	PREDICTED: acyl-CoA-binding protein [Cucumis sativus]	[more]
gi\|659095442\|ref\|XP_008448583.1\|	7.7e-42	97.75	PREDICTED: acyl-CoA-binding protein [Cucumis melo]	[more]
gi\|728833171\|gb\|KHG12614.1\|	8.8e-38	88.76	Acyl-CoA-binding [Gossypium arboreum]	[more]
gi\|743862792\|ref\|XP_010943634.1\|	1.5e-37	88.76	PREDICTED: acyl-CoA-binding protein [Elaeis guineensis]	[more]
gi\|823199218\|ref\|XP_012434840.1\|	2.6e-37	87.64	PREDICTED: acyl-CoA-binding protein-like isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000582	Acyl-CoA-binding_protein
IPR014352	FERM/acyl-CoA-bd_prot_sf
IPR022408	Acyl-CoA-binding_prot_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0000062	fatty-acyl-CoA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006869	lipid transport
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0009646	response to absence of light
biological_process	GO:0050826	response to freezing
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0005829	cytosol
molecular_function	GO:0000062	fatty-acyl-CoA binding
molecular_function	GO:0031210	phosphatidylcholine binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.322400	Cucsa.322400	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.322400.1	Cucsa.322400.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.322400.1.five_prime_UTR.1	Cucsa.322400.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.322400.1.CDS.1	Cucsa.322400.1.CDS.1	CDS
Cucsa.322400.1.CDS.2	Cucsa.322400.1.CDS.2	CDS
Cucsa.322400.1.CDS.3	Cucsa.322400.1.CDS.3	CDS
Cucsa.322400.1.CDS.4	Cucsa.322400.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.322400.1.three_prime_UTR.1	Cucsa.322400.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000582	Acyl-CoA-binding protein, ACBP	PRINTS	PR00689	ACOABINDINGP	coord: 21..39 score: 3.8E-27coord: 44..59 score: 3.8E-27coord: 4..19 score: 3.8E-27coord: 65..82 score: 3.8
IPR000582	Acyl-CoA-binding protein, ACBP	PFAM	PF00887	ACBP	coord: 5..82 score: 1.3
IPR000582	Acyl-CoA-binding protein, ACBP	PROFILE	PS51228	ACB_2	coord: 3..88 score: 4
IPR000582	Acyl-CoA-binding protein, ACBP	unknown	SSF47027	Acyl-CoA binding protein	coord: 3..83 score: 1.28
IPR014352	FERM/acyl-CoA-binding protein, 3-helical bundle	GENE3D	G3DSA:1.20.80.10		coord: 3..85 score: 1.1
IPR022408	Acyl-CoA-binding protein, ACBP, conserved site	PROSITE	PS00880	ACB_1	coord: 21..39 scor
None	No IPR available	unknown	Coil	Coil	coord: 65..85 scor
None	No IPR available	PANTHER	PTHR23310	ACYL-COA-BINDING PROTEIN, ACBP	coord: 1..84 score: 3.9
None	No IPR available	PANTHER	PTHR23310:SF67	SUBFAMILY NOT NAMED	coord: 1..84 score: 3.9