Cucsa.321360.2 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTGACTCTTTGCTAAACCCTACTTCACGTTCAGCTATTGCTGCCCAACCTCCCGTCCCAGTGGGTGCCGGAGGTCTTGTTAGGACGTCTATTCACCTCTCCCTTCCTTCCTCACCTGGAAAAGTGCTTCCGGCTGCTGCTCTCATTGCCGACGCCACACCTTTGCTGTTGTGACCAGGTTCATCCCACTTTCTCCGCTCCTCAGTCTCTCAATTTACCTCTTATTCTTCTAAATTTGATGGTTGAAGGACTTCTTTTTCTTCACAGCTAGAAGAAGGGAAAGATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGGTGTTTTTAATGGTCGAATTTTCTTCGTTTTTAACCTATATTGAATGTTAGGATTAGTACTTGTTTATTAGCTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTGTATCAGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAACGTCCAAGGATCCTACTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGGTACCTACTTCCCTTTTGATTTTGATTTTTTTTTCTAAAAAAATCTGCTTTTATTTTCTTTGCTGCTTATTATAGTTTGAAATCTGGACACGTGCTTAGAATTTTCACTGCATTCACATTTAGAAGTCTAATTGCAAACACGAGCACACCCGTTGAGTCATAATTTTGTGTTTAATGTTGCCTAGATTTTAAAGTTTAGGATTATGTTAGCTTAGTCAAGTAGTACAAATTATTTGACCAATGATTCTCTTCCCCAATTAGGTAATACTTTGTTGTATCCTCAGCTGTTGTGTATCTCATTCAATTTGTTCAATCATTGTTTACCTTGTGGTAAACGCTTCATACATAAGATCTGTGTTTGTTGCAAAATCTATGCATGGGCATGGATGCCTGATGGCTGGCTAGGAAATACTCACTGGCTGTTGTCCTTTTCTTGGTTTTCTCATTGTCTGGAAGTATATGGGTTTTTTTAGTTTCAGTTTTTATAGCTTTTGCAAGTTGTGTTCTGTTTTCGCTTATGCAAGTGATGATGGGAATTTCCAGTTGTTGGTTTAAAACTTTGAGTATTATGCAGTTTGAAGTGATATTTAGTGGTTGGAATAATACTGACTATATAACATGTAGTGTTGTTAAGTTACCAACTATTGCTAACTTCATAGCACTATTATGAGATGTAATGTAGAGGTTGTTTGTAGCAACTGTTTCCGACTATATAACATCTTGCACTTCAGCTGGAAACTTATCTCCCATGTTTATGTCGGTACTGCCTTTGGAACATAGAACATTCAGCATCAAATTTGAATATATTATAGTGCTTGCGGTGCTTGTTTCCTCTAAGGAGTTGCTTGCTCACTTCCTTTTCACTTATTGTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGTTTGTATATTGACCAACTACTACTTAAAAAAACATTCATTGTTCCTGATAGATACATTCTTGTTAATTGTCATAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGTAAGTCACTTTTCCTTGTAAGTTGTGTCGTAGACGTGGTAGCTTGGTTTCTCATTATTTTTAATGTCATAATTCGATCTAAATAGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAAGATCCATCTTTTTTATCGGACCTGTTGCGTCAATATGGATGCATTGTGGTTTGGAAGTTTTATTCACGGTGGAGGGTATATGAAGTTTCTGAAGCTTGTTCTGACAAAATCTCCAAGGTTGCGATTGCTAGCCTAAACCTTTGAAGCTTGGTCGGTGTGAACTGATCTTTGCTCGGCCTTGGGATTTTTAGATATTTCTCTCGTCAACTTTATCACAATTTCAAGTGCAGGAAAGGTGCCGTTTCTATGCCATTTCTATTAGGAAATGTAATAGATTTTAAGTTGTAACTAGTGTTGGTCAGTTTCACAATTTTGGTTTGTATTGATGATGTCGAATTTAGATGTTTTAAAAATGGCC GTTGACTCTTTGCTAAACCCTACTTCACGTTCAGCTATTGCTGCCCAACCTCCCGTCCCAGTGGGTGCCGGAGGTCTTGTTAGGACGTCTATTCACCTCTCCCTTCCTTCCTCACCTGGAAAAGTGCTTCCGGCTGCTGCTCTCATTGCCGACGCCACACCTTTGCTGTTGTGACCAGCTAGAAGAAGGGAAAGATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAACGTCCAAGGATCCTACTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAAGATCCATCTTTTTTATCGGACCTGTTGCGTCAATATGGATGCATTGTGGTTTGGAAGTTTTATTCACGGTGGAGGGTATATGAAGTTTCTGAAGCTTGTTCTGACAAAATCTCCAAGGTTGCGATTGCTAGCCTAAACCTTTGAAGCTTGGTCGGTGTGAACTGATCTTTGCTCGGCCTTGGGATTTTTAGATATTTCTCTCGTCAACTTTATCACAATTTCAAGTGCAGGAAAGGTGCCGTTTCTATGCCATTTCTATTAGGAAATGTAATAGATTTTAAGTTGTAACTAGTGTTGGTCAGTTTCACAATTTTGGTTTGTATTGATGATGTCGAATTTAGATGTTTTAAAAATGGCC ATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAACGTCCAAGGATCCTACTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAA MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQVLS*
BLAST of Cucsa.321360.2 vs. TrEMBL
Match: A0A0A0L448_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017130 PE=4 SV=1) HSP 1 Score: 394.4 bits (1012), Expect = 8.2e-107 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1
BLAST of Cucsa.321360.2 vs. TrEMBL
Match: V4S6C7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029331mg PE=4 SV=1) HSP 1 Score: 209.9 bits (533), Expect = 2.9e-51 Identity = 118/201 (58.71%), Postives = 144/201 (71.64%), Query Frame = 1
BLAST of Cucsa.321360.2 vs. TrEMBL
Match: V4U9K2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1) HSP 1 Score: 209.1 bits (531), Expect = 4.9e-51 Identity = 118/201 (58.71%), Postives = 143/201 (71.14%), Query Frame = 1
BLAST of Cucsa.321360.2 vs. TrEMBL
Match: V4SAU0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1) HSP 1 Score: 209.1 bits (531), Expect = 4.9e-51 Identity = 118/201 (58.71%), Postives = 143/201 (71.14%), Query Frame = 1
BLAST of Cucsa.321360.2 vs. TrEMBL
Match: W9QZQ7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003729 PE=4 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 6.0e-49 Identity = 117/212 (55.19%), Postives = 142/212 (66.98%), Query Frame = 1
BLAST of Cucsa.321360.2 vs. TAIR10
Match: AT1G71430.1 (AT1G71430.1 unknown protein) HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28 Identity = 77/168 (45.83%), Postives = 107/168 (63.69%), Query Frame = 1
BLAST of Cucsa.321360.2 vs. NCBI nr
Match: gi|778675227|ref|XP_004147238.2| (PREDICTED: uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]) HSP 1 Score: 394.4 bits (1012), Expect = 1.2e-106 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1
BLAST of Cucsa.321360.2 vs. NCBI nr
Match: gi|778675224|ref|XP_011650372.1| (PREDICTED: uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus]) HSP 1 Score: 388.7 bits (997), Expect = 6.5e-105 Identity = 202/206 (98.06%), Postives = 202/206 (98.06%), Query Frame = 1
BLAST of Cucsa.321360.2 vs. NCBI nr
Match: gi|659095798|ref|XP_008448773.1| (PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]) HSP 1 Score: 374.0 bits (959), Expect = 1.6e-100 Identity = 191/202 (94.55%), Postives = 197/202 (97.52%), Query Frame = 1
BLAST of Cucsa.321360.2 vs. NCBI nr
Match: gi|568867059|ref|XP_006486863.1| (PREDICTED: uncharacterized protein LOC102616713 [Citrus sinensis]) HSP 1 Score: 214.2 bits (544), Expect = 2.2e-52 Identity = 119/201 (59.20%), Postives = 144/201 (71.64%), Query Frame = 1
BLAST of Cucsa.321360.2 vs. NCBI nr
Match: gi|567860092|ref|XP_006422700.1| (hypothetical protein CICLE_v10029331mg [Citrus clementina]) HSP 1 Score: 209.9 bits (533), Expect = 4.1e-51 Identity = 118/201 (58.71%), Postives = 144/201 (71.64%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
|