Cucsa.240900.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTATTAAGGACTTGATAAAGAACAAAATAAGTTTAGCTGGTTCAGAATTGTCCACTCCTAAAGATATAGTTCATTATGTTCGTGTTGAACATGACTTAAGCATATCTTACCAAAAAGCATGGCGTGCACGTGAGGCTGCGTTGGATGAGACTAGAGGTTCTTCGAAGGATTCCTACAAGATGGTCGCCAAATTTGCATACATGTTGAATCTTAACAATCCAGGTATATTAATAATATACCTAACGGCCTATGTAATATATTTGTCATTAACAGATTGTTGTTCTTTAATGTCAATATTTGTTATGTTAATAGGTTCTATTGTTGAATACCGACTTGATGTGGATGGTAGATTTCTATATTTCTTCATGGCATTATATGCCTCTATTGCTGCTTGGCAACATTGTCGTCCAGTCATATCTATTGATGAAACAAGCATGAAGAATAAGTATGTGGTACTCTTTTAACTGCTTCAAGTCCTGATGCCAACGATCAAATTTTACCACTAGTATTTTGTGTTATCGATTCTGAAAATGATGCCTCTTGGACGTGGTTTTGCAATCAACTGAAGCGAATCATTGGTTGTAGGAATGACATTGTGATAGTATCTTACCGACATAAAAGTATATGCAAAGCGATAGAGGTAGTATTTCCCAACGTTCTGCATTGCATGTGTATGGTTCATTTACTTAGGAACTTGAAATTGAAGTATAGATCAATAGTCAATACCATGTTCCATGCATGTGGCAAGACTTACAATGTTGTTGATTTTGAACAAGAAATGCGTTTGTTGGAATCTAATGCACCTGGTATACGTGAGGAGTTACAATCAATTGGATTTTTAAGGTGGTCCCGTGCCTACTTACTCCTTAGTAGATATAATGTCATGACTACCAACATATCTGAGAGTTTGAATAATGCAATTATCAAGGCTAGGGAGTTGCCCATATGTTCAATGCTTGAGGTATTGAGAATGATATTGAATAGGTGGTGTTTTGAACGTAGAAATGAAACAGCCTATCAAGTTACAGATTTTACAAAAACTGTTGAAGGTATTATAAGGGAACGAATTGAAAATAGTCGATCTATATAATAGGTATATTTAACTTATAATCTAAATTGAATGTTAATAGATACATCTTATTATCTAATATATACCTAATTATCTTCTACATGTAATTATCTATGTAGGTCAATCCAGTCAACAATATGAAATACCAGGTCATCCATGGCACATCTCAATATGTTGTGTACTTGCCTTCGAAGATTTGTACTTGTAGGATGTTGGATATATTGCAAATACCTTGTGCCCATACATGTGTTGTTCTTACCATGAAGCATTTGTCAATAAAACCATTTGTTTCACATTATTATTTGAACAACACACTAAGTTCAATTTATAGAGAATTAATAAACCCTTTAGGTGATCATCGACAATTACCTGATGATGTTTTATCCATTGACATTCTGCCACCTAATGTAAAACGTCCCGTTGGTAGACCCAAGAAGATTAGAACCTCTTCTAAAAATGAAGTTCAAGAGATGGATAAAATGTGGGCGTTGTGAGCGTTATGGGCATAACAGAAAGCGATGCAAGTTTTCCTTATCTAGTTAG atggttattaaggacttgataaagaacaaaataagtttagctggttcagaattgtccactcctaaagatatagttcattatgttcgtgttgaacatgacttaagcatatcttaccaaaaagcatggcgtgcacgtgaggctgcgttggatgagactagaggttcttcgaaggattcctacaagatggtcgccaaatttgcatacatgttgaatcttaacaatccaggttctattgttgaataccgacttgatgtggatggtagatttctatatttcttcatggcattatatgcctctattgctgcttggcaacattgtcgtccagtcatatctattgatgaaacaagcatgaagaataatcctgatgccaacgatcaaattttaccactagtattttgtgttatcgattctgaaaatgatgcctcttggacgtggttttgcaatcaactgaagcgaatcattggttgtaggaatgacattgtgatagtatcttaccgacataaaagtatatgcaaagcgatagaggtagtatttcccaacgttctgcattgcatgtgtatggttcatttacttaggaacttgaaattgaagtatagatcaatagtcaataccatgttccatgcatgtggcaagacttacaatgttgttgattttgaacaagaaatgcgtttgttggaatctaatgcacctggtatacgtgaggagttacaatcaattggatttttaaggtggtcccgtgcctacttactccttagtagatataatgtcatgactaccaacatatctgagagtttgaataatgcaattatcaaggctagggagttgcccatatgttcaatgcttgaggtcaatccagtcaacaatatgaaataccaggtcatccatggcacatctcaatatgttgtgtacttgccttcgaagatttgtacttgtaggatgttggatatattgcaaataccttgtgcccatacatgtgttgttcttaccatgaagcatttgtcaataaaaccatttgtttcacattattatttgaacaacacactaagttcaatttatagagaattaataaaccctttaggtgatcatcgacaattacctgatgatgttttatccattgacattctgccacctaatcgttatgggcataacagaaagcgatgcaagttttccttatctagttag ATGGTTATTAAGGACTTGATAAAGAACAAAATAAGTTTAGCTGGTTCAGAATTGTCCACTCCTAAAGATATAGTTCATTATGTTCGTGTTGAACATGACTTAAGCATATCTTACCAAAAAGCATGGCGTGCACGTGAGGCTGCGTTGGATGAGACTAGAGGTTCTTCGAAGGATTCCTACAAGATGGTCGCCAAATTTGCATACATGTTGAATCTTAACAATCCAGGTTCTATTGTTGAATACCGACTTGATGTGGATGGTAGATTTCTATATTTCTTCATGGCATTATATGCCTCTATTGCTGCTTGGCAACATTGTCGTCCAGTCATATCTATTGATGAAACAAGCATGAAGAATAATCCTGATGCCAACGATCAAATTTTACCACTAGTATTTTGTGTTATCGATTCTGAAAATGATGCCTCTTGGACGTGGTTTTGCAATCAACTGAAGCGAATCATTGGTTGTAGGAATGACATTGTGATAGTATCTTACCGACATAAAAGTATATGCAAAGCGATAGAGGTAGTATTTCCCAACGTTCTGCATTGCATGTGTATGGTTCATTTACTTAGGAACTTGAAATTGAAGTATAGATCAATAGTCAATACCATGTTCCATGCATGTGGCAAGACTTACAATGTTGTTGATTTTGAACAAGAAATGCGTTTGTTGGAATCTAATGCACCTGGTATACGTGAGGAGTTACAATCAATTGGATTTTTAAGGTGGTCCCGTGCCTACTTACTCCTTAGTAGATATAATGTCATGACTACCAACATATCTGAGAGTTTGAATAATGCAATTATCAAGGCTAGGGAGTTGCCCATATGTTCAATGCTTGAGGTCAATCCAGTCAACAATATGAAATACCAGGTCATCCATGGCACATCTCAATATGTTGTGTACTTGCCTTCGAAGATTTGTACTTGTAGGATGTTGGATATATTGCAAATACCTTGTGCCCATACATGTGTTGTTCTTACCATGAAGCATTTGTCAATAAAACCATTTGTTTCACATTATTATTTGAACAACACACTAAGTTCAATTTATAGAGAATTAATAAACCCTTTAGGTGATCATCGACAATTACCTGATGATGTTTTATCCATTGACATTCTGCCACCTAATCGTTATGGGCATAACAGAAAGCGATGCAAGTTTTCCTTATCTAGTTAG MVIKDLIKNKISLAGSELSTPKDIVHYVRVEHDLSISYQKAWRAREAALDETRGSSKDSYKMVAKFAYMLNLNNPGSIVEYRLDVDGRFLYFFMALYASIAAWQHCRPVISIDETSMKNNPDANDQILPLVFCVIDSENDASWTWFCNQLKRIIGCRNDIVIVSYRHKSICKAIEVVFPNVLHCMCMVHLLRNLKLKYRSIVNTMFHACGKTYNVVDFEQEMRLLESNAPGIREELQSIGFLRWSRAYLLLSRYNVMTTNISESLNNAIIKARELPICSMLEVNPVNNMKYQVIHGTSQYVVYLPSKICTCRMLDILQIPCAHTCVVLTMKHLSIKPFVSHYYLNNTLSSIYRELINPLGDHRQLPDDVLSIDILPPNRYGHNRKRCKFSLSS*
BLAST of Cucsa.240900.1 vs. TrEMBL
Match: A5B699_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042737 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 4.7e-58 Identity = 153/446 (34.30%), Postives = 214/446 (47.98%), Query Frame = 1
BLAST of Cucsa.240900.1 vs. TrEMBL
Match: K4BII7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 4.7e-58 Identity = 138/418 (33.01%), Postives = 213/418 (50.96%), Query Frame = 1
BLAST of Cucsa.240900.1 vs. TrEMBL
Match: K4CJF3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57 Identity = 137/418 (32.78%), Postives = 212/418 (50.72%), Query Frame = 1
BLAST of Cucsa.240900.1 vs. TrEMBL
Match: U5DAI0_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00832p00002090 PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 4.4e-56 Identity = 134/418 (32.06%), Postives = 206/418 (49.28%), Query Frame = 1
BLAST of Cucsa.240900.1 vs. TrEMBL
Match: U5D175_AMBTC (Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s04652p00001680 PE=4 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 7.8e-53 Identity = 111/276 (40.22%), Postives = 167/276 (60.51%), Query Frame = 1
BLAST of Cucsa.240900.1 vs. NCBI nr
Match: gi|659096610|ref|XP_008449188.1| (PREDICTED: uncharacterized protein LOC103491139 [Cucumis melo]) HSP 1 Score: 414.5 bits (1064), Expect = 2.1e-112 Identity = 203/291 (69.76%), Postives = 237/291 (81.44%), Query Frame = 1
BLAST of Cucsa.240900.1 vs. NCBI nr
Match: gi|659098556|ref|XP_008450197.1| (PREDICTED: uncharacterized protein LOC103491857 [Cucumis melo]) HSP 1 Score: 353.6 bits (906), Expect = 4.5e-94 Identity = 183/285 (64.21%), Postives = 217/285 (76.14%), Query Frame = 1
BLAST of Cucsa.240900.1 vs. NCBI nr
Match: gi|659102492|ref|XP_008452162.1| (PREDICTED: uncharacterized protein LOC103493267 [Cucumis melo]) HSP 1 Score: 349.4 bits (895), Expect = 8.4e-93 Identity = 183/292 (62.67%), Postives = 216/292 (73.97%), Query Frame = 1
BLAST of Cucsa.240900.1 vs. NCBI nr
Match: gi|659130612|ref|XP_008465258.1| (PREDICTED: uncharacterized protein LOC103502914 [Cucumis melo]) HSP 1 Score: 340.5 bits (872), Expect = 3.9e-90 Identity = 175/261 (67.05%), Postives = 202/261 (77.39%), Query Frame = 1
BLAST of Cucsa.240900.1 vs. NCBI nr
Match: gi|659072256|ref|XP_008464510.1| (PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo]) HSP 1 Score: 334.7 bits (857), Expect = 2.1e-88 Identity = 171/265 (64.53%), Postives = 203/265 (76.60%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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