Cucsa.178810.3 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCCCATTCTGAAGCAGCCATGGCTTCAGCTCCTTCGAAGCTTTACGCAGGTTCTCCTCCAATCCCTTTCTCCTTCCTTATGGGCACTCGGGTACAACTATCGAAATTGCAGTGGCTTATTCGTTTTTTtGATCTTTGATTGTGTTGTTGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTGCTCTTCCGTTCTCCAAGTTTCTGTCTCATGTAATTGATAAATTATCTCCTTTCCTGTGAACCATTCTACCCAGTAGGTTTTTCTGATAGAACTGTAATGAACATTAGCATTTCCTTTTTCTTTCTGTTTTGGGTGTATAGGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAACCAACTTAATGAGGTTGTGGTTATTGGTACTGGATATGCTTCATGCAAGTATTTATACAACTCGTCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAGTTCGTGATTGGGGATGAGCAGTCCATCAAGGAAGATCCCAAAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCCTTGTGTTGTATCCTTCCTTGTTGATGATTATTGGTGCTGATTATTTGCTTGTTTATGCTCATAAGTAAAGCTTGACATGTTCTACAAATGGGCCATTAATGTAGCAGTCAGGACTAAACAGTATCTATTGTGATGGGAGTGGCATTTGGTCGAAATTTGTGGTAATGAGTATGGTTGCAAAATGTTGTAAGAGTTATGGTTGGCACGATGGAATTTTCTAATAGTCACACTGTTTAAATGTAACTTGAGTAATGTAATATTCATCAACATACTGTTATGCTTCAAATGCTTGACCCTGTGATTAGATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCACGAGTAAGCATTTGTTTCTGTTCTGGATAATTTATTCCCAATTTGCATATCCTGATTTTTCTTGTTGCTTACATATACTATTTGTTTTTGTCCTTTTTTGAAAATGTGACTAATCTATGTGAATATATTTTACTTTGAGTGTAGATCCTTTGCTTGCAGGGATCCCCAGATGGTCCTGAACAGTAAGAATATTTTCTTTATTCTTTAAAAATATGTATATATTTCTAATGAAGTTATTTTATTTGTGCAATTTTCTTTAATAATGGGAATCAAACTTTAAAATCTTCCGTCTAGTGACTGTTTTTCTCTTCCAGATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTTGTATTATTTTGTTCACTCTTCTGTGTGTTCTTATATGACTTTACTAACTTCTGTCAATCACCAACTCTCATTATTTGAACTGGGTGATATCAGTAAGTAATGAAAATGTGACCACAAGTATTTCATGGAAATGCTCGAGACAAGTTTCCTCTCTATTTAACTTGTTCTTTGTTTGGTCTTGATGGCAGAAAATGGTGCTGGATTAAACTTTTTTGTTCGTTTCTTTTCCTATTTGAATTTGAAGATATCAATTTTTTCTCCCCCTATTTCGAGATATCCCACTTGTCCCATAGGCGAATTTGAATTTGAATGCATTAACAAGACTAAGTATTTTATATTGAACTACTTTCTTGGAGTTTACAACTGAATATCTAGTCTCTACCGTTAGAGTTGAACTCCAATATTTGGTATAGATTTTATTATTTAATTTGCTTGCCCTGTGGATGGAAAGCTGATGGATCTCTGGCATCTTTTCTACTATTAGTCTAGTCAGATTCAGTTGTGAAAGTTTTCATGTTTATATGTATGCATGTAAGTGTATGTATAAAGAATAAGAAGAAGAACAAATCTAGAGAGCAAAGATTCTTCGAAAAGGACAAGGGGAGAATTGGGAGTTTCCCTGAAGGAAGATTCTGGGATAGAAGTTTATAAGAAAAACTTCAGTCCAAGTTATCGATAGAGTAGAGAAGTAGCAAAACCCTTATGTAAGGTACTCCAAGTAAAGGCTGTAACTGTACAAGCTCCAAAATTTAGGAGAACAGTCCTGAAAAAACCAATAAAGAGTTGTATTTTCAAATTGGAAAAATTATAAATAGAGATGAACTTTTAATTTACTCTCTCCAACAACACATCAAATCCAAAGGTGAAAACTACTTAAGATTTTTGAATTGCTAGTTTTCATTTTGGTTATGACAGCTTAACGTAACAATATTGACCAAAGTATGATTAATTTCTTGATATCAAGTAATTGCATCTGCAATGTTCATGATAATAGAAATCATTTGGTCACAAGCAGAAAGTGGTAGTCAATGAGATCGTAAAAATGTGAATCTAATCTTCATTCACATTTGCATTTATGGGTTATGTTTAAACTTTCATGTGTGCTAGTCACTCATTTGAAGTTCACAGCTGTCTCCGTTTTCCTCTCCATGTTGCTTTTAACTATAAACTACATTCAACATTGAACAATGTTTTCATTTGTATAAGTATCCTATGATGTACAATTTTTCCTATGATGTACAATTTTATCATTCTTGCTTCAGGTTCCTATAGATTCATGTTACATTGGTTCCCACAATTCTGCATTTCTTCAGCAGGTAAGCTAACTGCTCATTGTTCCTTAATGGGTTTTTtACTTTtCTTGGAATCTTACAGTTACCATCTCCGGATGTATCATCTATTCATTGCTGGTGATGATTTGATTTCTGATGCTGTATAGGCTTCTTACATAACGGGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAGTATCTCTCTGTAAGTTTTACTTTCCTATGGGTTCCCcTGTTTTTtGTAATCTCTTGCTTAGGCTGTTGTGATATTCTATTGTTCTTTCTATGCAGACTGTTTTTGGCACCGATTTGCATTCCCGGACCTTTTTACAGCTTCCAAAATCTGTTGGTGTGGATTTTCGTGCATCGTAAGTCTGCAGTCTTGTGAATACAAAATTCTGTTGTTTTGTGCTTATTATTTTGTGTCACTTACTACGGCCTTCTACAGATTTACACCTCTCATCATCATTTTGGGAATTTGCAGGTGTTTTTGCCACAAGAAAACGATCGATATGGGCTATGTCTGTTCTGTTTGTTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTAAGCGAAAGGTCAAGCCATAATTATTATGTTTTTCCCTTTTACTTGTGGTTTCCTAAAATTTATTGAAGGTAGTTTGACATTGACTTTCGAGAATGCTGTTGTCTGTTTGGCTTTATAAGTATGAAAaGGAAGATGAAGAGGAACCTAATTTTTGAGAACTCATTATGCTAGGGCTTTTTCCTCGGCAGTTTATATAATATTTCGGTGAGACATGATGTCAACGCGAGGGGGAGCTTTGTACCTTAGTATTGCCCCTAGATAATGGTTGCCTAAATAAGATGCTAAAAAATTCTGCCACGGCTTAAGTTTCTTAGGGGTGTTTGGAAAACTGAAATGTAATTAGAGTCACTTTGAATCAGAGTGGTGTTAAAATGGGTGTTGAATTGAGGGCAAAACAAAAATGGGGTCGTAAAGCGCCAAGACCCTTCTGAAATGCTAAAAAAACTCAACAATGTTGTTTGCCTACTATTACTTCTGTCTACTTCAGAACAAGATTGAATGTATTAATATTAATGAGTTTCAACTTCATTCAGGTCAGTTTTTGGTGAGACACCAGTAGAACTCGATTCAGTGTCTAAACTGAAGAGAAAAACTCCAGAATGATTGCGCTCTTCTGTAAGTTGTGATGGATCATTTCATGAAACTCAGTGTTATTTTATGATTTTGAACCATTTGTTTTCACTTCCATGGCTATAGAACTGCTTCATTTTTCTTCCCTTTCTTGAAGCTGTTTGGAACTGGAATTCATTTGGTTCACATGGCATGAACAGAGATGACTCAAAGGAAACAGTTGCTGAAAGAGAGTCAATCTCAACATTGTACAATTCAGATCAATAGTTGTCGAATTCGGATGGGATAACATGGAACGATGGCTAGCAAGGTCATGCATCTGTATTTCGTCTATTCCAGTCTGATACAAATCGGGTACAAGGTTTATATGGAATTCGAGACTTTAACTAGAAAAGTTAGTCTAATGTAATTGTACCGAAAGCTTGAGTGGTTTATAAGTACATGTAGATTTATATTTCTCTCACGCTTGAAAGTACTCCAAAGCTTACCTTTGTAAAGGTAGACAGAAGGATAGGGATATTCACATTGTTGATTTCAAGACCTCATACTTGGAAATTTTACGAGTTTGAAATGTGCCAAGTGAATCATATAATACTACAATTTGAGCATA GCCCATTCTGAAGCAGCCATGGCTTCAGCTCCTTCGAAGCTTTACGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTGCTCTTCCGTTCTCCAAGTTTCTGTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAACCAACTTAATGAGGTTGTGGTTATTGGTACTGGATATGCTTCATGCAAGTATTTATACAACTCGTCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAGTTCGTGATTGGGGATGAGCAGTCCATCAAGGAAGATCCCAAAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCCTTGTGTTATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCACGAATCCTTTGCTTGCAGGGATCCCCAGATGGTCCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTCCTATAGATTCATGTTACATTGGTTCCCACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACGGGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAGTATCTCTCTACTGTTTTTGGCACCGATTTGCATTCCCGGACCTTTTTACAGCTTCCAAAATCTGTTGGTGTGGATTTTCGTGCATCGTGTTTTTGCCACAAGAAAACGATCGATATGGGCTATGTCTGTTCTGTTTGTTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTCAGTTTTTGGTGAGACACCAGTAGAACTCGATTCAGTGTCTAAACTGAAGAGAAAAACTCCAGAATGATTGCGCTCTTCTGTAAGTTGTGATGGATCATTTCATGAAACTCAGTGTTATTTTATGATTTTGAACCATTTGTTTTCACTTCCATGGCTATAGAACTGCTTCATTTTTCTTCCCTTTCTTGAAGCTGTTTGGAACTGGAATTCATTTGGTTCACATGGCATGAACAGAGATGACTCAAAGGAAACAGTTGCTGAAAGAGAGTCAATCTCAACATTGTACAATTCAGATCAATAGTTGTCGAATTCGGATGGGATAACATGGAACGATGGCTAGCAAGGTCATGCATCTGTATTTCGTCTATTCCAGTCTGATACAAATCGGGTACAAGGTTTATATGGAATTCGAGACTTTAACTAGAAAAGTTAGTCTAATGTAATTGTACCGAAAGCTTGAGTGGTTTATAAGTACATGTAGATTTATATTTCTCTCACGCTTGAAAGTACTCCAAAGCTTACCTTTGTAAAGGTAGACAGAAGGATAGGGATATTCACATTGTTGATTTCAAGACCTCATACTTGGAAATTTTACGAGTTTGAAATGTGCCAAGTGAATCATATAATACTACAATTTGAGCATA ATGGCTTCAGCTCCTTCGAAGCTTTACGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTGCTCTTCCGTTCTCCAAGTTTCTGTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTCTGAACCAACTTAATGAGGTTGTGGTTATTGGTACTGGATATGCTTCATGCAAGTATTTATACAACTCGTCTTCTTACTCAAATCATGGCCTTGAAGATGGTAGAATGCCTGCACTTTGTACTCGTTTATTGAAGAATTTGGAGGAGTTCGTGATTGGGGATGAGCAGTCCATCAAGGAAGATCCCAAAGGAGGGACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCCTTGTGTTATATACAGAAAGTTTTCCGCTCTGGATCTCTCCATCCCCAACCACGAATCCTTTGCTTGCAGGGATCCCCAGATGGTCCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAGCGTTCAATGGTTCCTATAGATTCATGTTACATTGGTTCCCACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACGGGTGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGCTGTTTCAGTATCTCTCTACTGTTTTTGGCACCGATTTGCATTCCCGGACCTTTTTACAGCTTCCAAAATCTGTTGGTGTGGATTTTCGTGCATCGTGTTTTTGCCACAAGAAAACGATCGATATGGGCTATGTCTGTTCTGTTTGTTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTCAGTTTTTGGTGAGACACCAGTAGAACTCGATTCAGTGTCTAAACTGAAGAGAAAAACTCCAGAATGA MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRKTPE*
BLAST of Cucsa.178810.3 vs. Swiss-Prot
Match: TFB4_ARATH (RNA polymerase II transcription factor B subunit 4 OS=Arabidopsis thaliana GN=TFB4 PE=2 SV=1) HSP 1 Score: 432.2 bits (1110), Expect = 4.6e-120 Identity = 215/299 (71.91%), Postives = 249/299 (83.28%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. Swiss-Prot
Match: TF2H3_DICDI (General transcription factor IIH subunit 3 OS=Dictyostelium discoideum GN=gtf2h3 PE=3 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 1.1e-49 Identity = 106/255 (41.57%), Postives = 151/255 (59.22%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. Swiss-Prot
Match: TF2H3_HUMAN (General transcription factor IIH subunit 3 OS=Homo sapiens GN=GTF2H3 PE=1 SV=2) HSP 1 Score: 188.0 bits (476), Expect = 1.5e-46 Identity = 115/306 (37.58%), Postives = 171/306 (55.88%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. Swiss-Prot
Match: TF2H3_BOVIN (General transcription factor IIH subunit 3 OS=Bos taurus GN=GTF2H3 PE=2 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 4.4e-46 Identity = 116/305 (38.03%), Postives = 168/305 (55.08%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. Swiss-Prot
Match: TF2H3_MOUSE (General transcription factor IIH subunit 3 OS=Mus musculus GN=Gtf2h3 PE=1 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 1.3e-45 Identity = 118/305 (38.69%), Postives = 168/305 (55.08%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. TrEMBL
Match: A0A0A0LMM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072450 PE=4 SV=1) HSP 1 Score: 598.6 bits (1542), Expect = 4.2e-168 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. TrEMBL
Match: M5XYU6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009386mg PE=4 SV=1) HSP 1 Score: 487.6 bits (1254), Expect = 1.0e-134 Identity = 241/295 (81.69%), Postives = 263/295 (89.15%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. TrEMBL
Match: A0A061FGT5_THECC (Basal transcription factor complex subunit-related isoform 1 OS=Theobroma cacao GN=TCM_035096 PE=4 SV=1) HSP 1 Score: 478.0 bits (1229), Expect = 8.2e-132 Identity = 232/295 (78.64%), Postives = 257/295 (87.12%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. TrEMBL
Match: E0CR79_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03100 PE=4 SV=1) HSP 1 Score: 475.7 bits (1223), Expect = 4.1e-131 Identity = 234/296 (79.05%), Postives = 260/296 (87.84%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. TrEMBL
Match: A0A0D2TQJ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G245300 PE=4 SV=1) HSP 1 Score: 472.6 bits (1215), Expect = 3.5e-130 Identity = 230/295 (77.97%), Postives = 255/295 (86.44%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. TAIR10
Match: AT1G18340.1 (AT1G18340.1 basal transcription factor complex subunit-related) HSP 1 Score: 432.2 bits (1110), Expect = 2.6e-121 Identity = 215/299 (71.91%), Postives = 249/299 (83.28%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. NCBI nr
Match: gi|449470273|ref|XP_004152842.1| (PREDICTED: general transcription factor IIH subunit 3 [Cucumis sativus]) HSP 1 Score: 598.6 bits (1542), Expect = 6.0e-168 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. NCBI nr
Match: gi|659082582|ref|XP_008441918.1| (PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH subunit 3 [Cucumis melo]) HSP 1 Score: 589.7 bits (1519), Expect = 2.8e-165 Identity = 290/295 (98.31%), Postives = 293/295 (99.32%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. NCBI nr
Match: gi|645225617|ref|XP_008219657.1| (PREDICTED: general transcription factor IIH subunit 3 [Prunus mume]) HSP 1 Score: 494.2 bits (1271), Expect = 1.6e-136 Identity = 242/295 (82.03%), Postives = 264/295 (89.49%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. NCBI nr
Match: gi|694371044|ref|XP_009363173.1| (PREDICTED: general transcription factor IIH subunit 3 [Pyrus x bretschneideri]) HSP 1 Score: 488.8 bits (1257), Expect = 6.7e-135 Identity = 242/296 (81.76%), Postives = 261/296 (88.18%), Query Frame = 1
BLAST of Cucsa.178810.3 vs. NCBI nr
Match: gi|596178523|ref|XP_007223251.1| (hypothetical protein PRUPE_ppa009386mg [Prunus persica]) HSP 1 Score: 487.6 bits (1254), Expect = 1.5e-134 Identity = 241/295 (81.69%), Postives = 263/295 (89.15%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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