Cucsa.169330.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTGAAGAAGTAGTTTCTTCATATCTGCTATAAATACACATAAGAATGAAGCCATTCTCATCCAACGAGTACTCTATTTTCTAAATCAAGATCCATATCAAGCAAAACACCGCTCAAACTCACTCACTCTTCTCTTGTTTCAAGTAAATTTTCGATATGGGAATCCGTCTGCCATCGATTCTTCTCAACGCCAAGCAGATTTTGAAAATGCAAGCTATGTCAGCCAGAAATCAATTTGATGTTCCCAAAGGCCATATTGCAGTTTATGTGGGTGAGATTCAAAGGAAGAGATTTGTTGTCCCTATATCATACTTGAAGCATCCTTCTTTTGTAGATCTACTCAATAGATCAGAAGAAGAATTTGGATTTTGCCACCCAAGGGGTGGCTTGACGATTCCATGCCGAGAGGATGCTTTCATAAATCTCACTGCTAGGCTGCACACATCATGAAAATAGAAAGAACAAAAAGAAAATGTTATTAATCACAGTTTTGTCATCTCTAACTTTAGGAAGTAGAGTAGGATAATACTGTACAGTTACTCAGTTGTTTGAGCAATGATAGTTATATTCTTCTCTTACAAAAACGTTTCTCTTCAGCTCATGAATTTCAATTTTTATCAATTACTTTGTTTTTCTT TTTGAAGAAGTAGTTTCTTCATATCTGCTATAAATACACATAAGAATGAAGCCATTCTCATCCAACGAGTACTCTATTTTCTAAATCAAGATCCATATCAAGCAAAACACCGCTCAAACTCACTCACTCTTCTCTTGTTTCAAGTAAATTTTCGATATGGGAATCCGTCTGCCATCGATTCTTCTCAACGCCAAGCAGATTTTGAAAATGCAAGCTATGTCAGCCAGAAATCAATTTGATGTTCCCAAAGGCCATATTGCAGTTTATGTGGGTGAGATTCAAAGGAAGAGATTTGTTGTCCCTATATCATACTTGAAGCATCCTTCTTTTGTAGATCTACTCAATAGATCAGAAGAAGAATTTGGATTTTGCCACCCAAGGGGTGGCTTGACGATTCCATGCCGAGAGGATGCTTTCATAAATCTCACTGCTAGGCTGCACACATCATGAAAATAGAAAGAACAAAAAGAAAATGTTATTAATCACAGTTTTGTCATCTCTAACTTTAGGAAGTAGAGTAGGATAATACTGTACAGTTACTCAGTTGTTTGAGCAATGATAGTTATATTCTTCTCTTACAAAAACGTTTCTCTTCAGCTCATGAATTTCAATTTTTATCAATTACTTTGTTTTTCTT ATGGGAATCCGTCTGCCATCGATTCTTCTCAACGCCAAGCAGATTTTGAAAATGCAAGCTATGTCAGCCAGAAATCAATTTGATGTTCCCAAAGGCCATATTGCAGTTTATGTGGGTGAGATTCAAAGGAAGAGATTTGTTGTCCCTATATCATACTTGAAGCATCCTTCTTTTGTAGATCTACTCAATAGATCAGAAGAAGAATTTGGATTTTGCCACCCAAGGGGTGGCTTGACGATTCCATGCCGAGAGGATGCTTTCATAAATCTCACTGCTAGGCTGCACACATCATGA MGIRLPSILLNAKQILKMQAMSARNQFDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEEEFGFCHPRGGLTIPCREDAFINLTARLHTS*
BLAST of Cucsa.169330.1 vs. Swiss-Prot
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 1.1e-22 Identity = 54/86 (62.79%), Postives = 64/86 (74.42%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. Swiss-Prot
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 1.1e-22 Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. Swiss-Prot
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 4.3e-22 Identity = 52/86 (60.47%), Postives = 63/86 (73.26%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 5.6e-22 Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 9.6e-22 Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. TrEMBL
Match: A0A0A0LM74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258830 PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 1.0e-46 Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. TrEMBL
Match: A0A0A0LPJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258820 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 7.3e-45 Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. TrEMBL
Match: A0A0A0LJ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258810 PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 6.0e-39 Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. TrEMBL
Match: A0A0A0LPH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 6.2e-36 Identity = 72/97 (74.23%), Postives = 88/97 (90.72%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. TrEMBL
Match: A0A0A0LM65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258730 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 3.1e-35 Identity = 74/97 (76.29%), Postives = 87/97 (89.69%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. TAIR10
Match: AT4G38840.1 (AT4G38840.1 SAUR-like auxin-responsive protein family ) HSP 1 Score: 116.7 bits (291), Expect = 8.1e-27 Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. TAIR10
Match: AT2G21210.1 (AT2G21210.1 SAUR-like auxin-responsive protein family ) HSP 1 Score: 113.6 bits (283), Expect = 6.8e-26 Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. TAIR10
Match: AT4G34810.1 (AT4G34810.1 SAUR-like auxin-responsive protein family ) HSP 1 Score: 109.8 bits (273), Expect = 9.8e-25 Identity = 56/101 (55.45%), Postives = 74/101 (73.27%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. TAIR10
Match: AT5G18060.1 (AT5G18060.1 SAUR-like auxin-responsive protein family ) HSP 1 Score: 107.1 bits (266), Expect = 6.4e-24 Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. TAIR10
Match: AT5G18030.1 (AT5G18030.1 SAUR-like auxin-responsive protein family ) HSP 1 Score: 107.1 bits (266), Expect = 6.4e-24 Identity = 54/86 (62.79%), Postives = 64/86 (74.42%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. NCBI nr
Match: gi|778669611|ref|XP_011649277.1| (PREDICTED: auxin-induced protein X15-like [Cucumis sativus]) HSP 1 Score: 193.7 bits (491), Expect = 1.5e-46 Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. NCBI nr
Match: gi|778669614|ref|XP_011649278.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]) HSP 1 Score: 193.0 bits (489), Expect = 2.5e-46 Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. NCBI nr
Match: gi|659115604|ref|XP_008457639.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo]) HSP 1 Score: 188.3 bits (477), Expect = 6.2e-45 Identity = 92/97 (94.85%), Postives = 94/97 (96.91%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. NCBI nr
Match: gi|700206767|gb|KGN61886.1| (hypothetical protein Csa_2G258820 [Cucumis sativus]) HSP 1 Score: 187.6 bits (475), Expect = 1.1e-44 Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1
BLAST of Cucsa.169330.1 vs. NCBI nr
Match: gi|700206766|gb|KGN61885.1| (hypothetical protein Csa_2G258810 [Cucumis sativus]) HSP 1 Score: 167.9 bits (424), Expect = 8.6e-39 Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
|