Cucsa.168250.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCGGGGACAGCCGTTTCTCTCTCGCTTGTTTTTCATCCTCTGGAGCTGCTCCAAGCTTCTCAACTACTTCACAACCATGGCTGTCGGGTACCCTTCCTCTCTCCCTTTCTTCTCCCCATTACTTTCCCTTTACTCTCTTCACTGATGCAACTCTTTTTtCTTCTCCTTGCAGCAAAAACAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAGACGTACGTATCTTCTTCCATTCCATTGAAATTTCTTATATCAGATCTGGGTGTCGTCTTATATTCGGTTCTTGTTTATTTCAATTCTTCTCTTTTAGTTAATAATAATGCTCTATTGATGGATTTATTAATTTGGTTTTGTTTCTGTATGGGTTCTTTAGTGTCGACCCATTTGCAAAGAAGGATTGGTATGATATCAAGGCACCCTCTGTGTTCACTGTCAAGAACGTTGGAAAGACTCTTGTTACCCGTACCCAGGGAACCAAGGTAGATTCTTCATTGTTATTGCTCCCTTCAGCTGTAGTTTCTTTACTTTTATTTGCTTATGCCATTGTCTTTCTATATACTTTTGCTGTATTTTGCTATCTTCGTGTGGAAGATGCTCTCTTGTTTGTAGAATGGTCACTATGTTTTACGAAGATATCTTAGTGTATATCTGGGAGTGATTTTATCATATTGAAAATTACCTCGATATACAATTTTACCCTTCTAAACGCAATTTTCTCGTCATTAAAATTTATTTTAAATGATTAAAGAGGTGATTTATAGTGGTTTTGAAAACCACAAAATTGATTGTAACAATTTCAAGATACTCTCAAACATGCCCTTAATGGGGTGTTTGCCTAATATTTTCACCGCTCAGCATGTTCTTGAGTGACTACCTTAATAGCAAAAATGACATTGTTTATTTAGCTGTAATGTGGTTTCGAGACATCTATTTGGTTGTATTAATTTTAATCGTTCCATATAGATATGATGCGGTGTTAGTAAAGTCACTCATTTTGTAGATTAGAAGTGGCATTTTATTATTCTATACACACACAGCCTTTGAAATCCTTTGTAGGATTATATTTATTTATTTTTtATAGGATTCTAGGATTACACTTAATAGTAGGTCAGGTTAATTTTTACCTTTAGCAATGCATGAAACATTCTGAAATGTATGGTTATACTTGTAGATTGATATGGCAATTATTTTtCTTTGTGGTTTGGTACTGTTATTTCTCGTCTGTCTTTTATCAGTAACTAATAATAATTGTTATATCAACAGATTGCTTCTGAAGGGCTTAAACATAGAGTGTTTGAGGTATCACTCGCTGATCTTCAAGAAGATGAAGAGCACGCCTACAGAAAGATTAGATTGAGAGCTGAAGATGTTCAAGGAAGAAACGTTCTGACTAATTTCTGGGTATGGAATGGATGAGTTGCCTTTCATATATATTTGGATGGATGTCACACGCTTCAAATAGAAAAGTTTATTAGAATGACATTGACTGCCTTTATCATTTTGAGAATGGTCCATAAAAaGATTTTTTATGGCTCACAAGCGTTCTGCCTTCCATTGTTCTACAGGGAATGAATTTCACTACAGACAAATTAAGGTCATTGGTAAGGAAGTGGCATACGTTGATTGAAGCCCATGTGGATGTTAAGACCACAGACAATTACACTCTGAGGATGTTTTGCATTGGGTTTACAAAGAGACGTCCAAATCAAGTCAAAAGGACCTGCTATGCGCAATCCAGTCAGATCAGACAGGTGACTGCTCTTTTTTTTTtGTTGTCTTCCTGAAAAGATTTTACTGATGATCTGAATCTCTATATTGGATTTACTATGAAGGATATTATTGAATATAAAAGTTATGGATGAATTGAAAGCCTTGTAGACAACTATTTATCTTAACAATGGTCGCATGCATGGGAGAATACTGGAACAATGTTTTTGTTAGTGCAATGACAATAGACACCTTGCACATTCTGCTTCATTTTAACATTCTGCTTCATTTTAACCTTTCTTAAAATCGAAGTTTAGGATTAATGTGTATTTTCTTGACTCTTAAATATTGTTCACCCCGTACTATTGGTTACTTCAATTTTAATTATCTGAAATGTTATTTTATACTATTAACTTATATTGGACAATTGGTTATGCCAATCAAATACTATGCCCTTTGTCTGAGTTAGTGTTTTATTTCCTCTAGAAAAATGTTTGTGCATCGTGTCTGATTTTGAAGGACATGGGGATGAGATTGAGATTTGCAACTTTTTATATTCCTGGCAATCTGTTACTGTTTGTAAACATTTGTTTGTAATTACAGATTCGTAGGAAGATGAGGGAGATAATGGTCAACCAAGCAACATCATGCGATTTGAAAGAGTTGGTTCGTAAGTTCATACCTGAATCAATTGGAAAGGATATCGAGAAGGCTACATCTAGCATATACCCTCTACAGAATGTTTTCATCCGGAAGGTCAAGATCTTGAAAGCTCCCAAGTTTGATCTTGGAAAGTTGATGGAGGTATACAACTATTTACGTGTGCTTGTTAACTATCTATTTCGACCATAATTTGAAGATTCATTATCAAATCTGCTTGTCATCTTTTTtCTTGTTCTGAATATAGTTCTTAGGTAGGTGTCAATCGAGGCTGTTTAATTGGTTGCAATGATATTTATCAACCTTTTTGGTTGTCTATCTATAGGTTCATGGTGATTATTCGGAAGATGTTGGCGTCAAGGTAGACAGGCCTGCGGAAGAAGCCGTTGAAGGTGCTACTGAAGTTGTCGGTGCTTGAAAATGGAATCATGAATCAACTTTCTTATATTTACGAATGAACTGTGGCTTTTAATTTTTtAAAATTTTCTATTTTTAGTTAGTCTTGTTATGTTTCTGCCAAGTTGAGAAATCAGAGATATTCAGCGATTTTGACTATGAAAATACTTGCCGCTTTTTAGTTATGCATTGTTCCTTGGGACCATTTGAATACACATATTAAGCGCTCTCGTCTTGTTTTATCAACTTGAAAACTTGTTATTAAGTCATTTTGAAATGTGTCTTTACTGCAACTACG TCGGGGACAGCCGTTTCTCTCTCGCTTGTTTTTCATCCTCTGGAGCTGCTCCAAGCTTCTCAACTACTTCACAACCATGGCTGTCGGCAAAAACAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAGACTGTCGACCCATTTGCAAAGAAGGATTGGTATGATATCAAGGCACCCTCTGTGTTCACTGTCAAGAACGTTGGAAAGACTCTTGTTACCCGTACCCAGGGAACCAAGATTGCTTCTGAAGGGCTTAAACATAGAGTGTTTGAGGTATCACTCGCTGATCTTCAAGAAGATGAAGAGCACGCCTACAGAAAGATTAGATTGAGAGCTGAAGATGTTCAAGGAAGAAACGTTCTGACTAATTTCTGGGGAATGAATTTCACTACAGACAAATTAAGGTCATTGGTAAGGAAGTGGCATACGTTGATTGAAGCCCATGTGGATGTTAAGACCACAGACAATTACACTCTGAGGATGTTTTGCATTGGGTTTACAAAGAGACGTCCAAATCAAGTCAAAAGGACCTGCTATGCGCAATCCAGTCAGATCAGACAGATTCGTAGGAAGATGAGGGAGATAATGGTCAACCAAGCAACATCATGCGATTTGAAAGAGTTGGTTCGTAAGTTCATACCTGAATCAATTGGAAAGGATATCGAGAAGGCTACATCTAGCATATACCCTCTACAGAATGTTTTCATCCGGAAGGTCAAGATCTTGAAAGCTCCCAAGTTTGATCTTGGAAAGTTGATGGAGGTTCATGGTGATTATTCGGAAGATGTTGGCGTCAAGGTAGACAGGCCTGCGGAAGAAGCCGTTGAAGGTGCTACTGAAGTTGTCGGTGCTTGAAAATGGAATCATGAATCAACTTTCTTATATTTACGAATGAACTGTGGCttttaattttttaaaattttctatttttaGTTAGTCTTGTTATGTTTCTGCCAAGTTGAGAAATCAGAGATATTCAGCGATTTTGACTATGAAAATACTTGCCGCTTTTTAGTTATGCATTGTTCCTTGGGACCATTTGAATACACATATTAAGCGCTCTCGTCTTGTTTTATCAACTTGAAAACTTGTTATTAAGTCATTTTGAAATGTGTCTTTACTGCAACTACG ATGGCTGTCGGCAAAAACAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAGACTGTCGACCCATTTGCAAAGAAGGATTGGTATGATATCAAGGCACCCTCTGTGTTCACTGTCAAGAACGTTGGAAAGACTCTTGTTACCCGTACCCAGGGAACCAAGATTGCTTCTGAAGGGCTTAAACATAGAGTGTTTGAGGTATCACTCGCTGATCTTCAAGAAGATGAAGAGCACGCCTACAGAAAGATTAGATTGAGAGCTGAAGATGTTCAAGGAAGAAACGTTCTGACTAATTTCTGGGGAATGAATTTCACTACAGACAAATTAAGGTCATTGGTAAGGAAGTGGCATACGTTGATTGAAGCCCATGTGGATGTTAAGACCACAGACAATTACACTCTGAGGATGTTTTGCATTGGGTTTACAAAGAGACGTCCAAATCAAGTCAAAAGGACCTGCTATGCGCAATCCAGTCAGATCAGACAGATTCGTAGGAAGATGAGGGAGATAATGGTCAACCAAGCAACATCATGCGATTTGAAAGAGTTGGTTCGTAAGTTCATACCTGAATCAATTGGAAAGGATATCGAGAAGGCTACATCTAGCATATACCCTCTACAGAATGTTTTCATCCGGAAGGTCAAGATCTTGAAAGCTCCCAAGTTTGATCTTGGAAAGTTGATGGAGGTTCATGGTGATTATTCGGAAGATGTTGGCGTCAAGGTAGACAGGCCTGCGGAAGAAGCCGTTGAAGGTGCTACTGAAGTTGTCGGTGCTTGA MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQEDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA*
BLAST of Cucsa.168250.1 vs. Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1) HSP 1 Score: 468.4 bits (1204), Expect = 5.2e-131 Identity = 234/261 (89.66%), Postives = 248/261 (95.02%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2) HSP 1 Score: 466.8 bits (1200), Expect = 1.5e-130 Identity = 228/260 (87.69%), Postives = 247/260 (95.00%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1) HSP 1 Score: 464.9 bits (1195), Expect = 5.7e-130 Identity = 230/261 (88.12%), Postives = 246/261 (94.25%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4) HSP 1 Score: 464.2 bits (1193), Expect = 9.7e-130 Identity = 228/261 (87.36%), Postives = 249/261 (95.40%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1) HSP 1 Score: 455.3 bits (1170), Expect = 4.5e-127 Identity = 225/261 (86.21%), Postives = 245/261 (93.87%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. TrEMBL
Match: A0A0A0LLN9_CUCSA (40S ribosomal protein S3a OS=Cucumis sativus GN=Csa_2G223140 PE=3 SV=1) HSP 1 Score: 519.6 bits (1337), Expect = 2.2e-144 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. TrEMBL
Match: A0A0A0L4P6_CUCSA (40S ribosomal protein S3a OS=Cucumis sativus GN=Csa_3G146360 PE=3 SV=1) HSP 1 Score: 505.4 bits (1300), Expect = 4.2e-140 Identity = 253/261 (96.93%), Postives = 258/261 (98.85%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. TrEMBL
Match: A0A059B376_EUCGR (40S ribosomal protein S3a OS=Eucalyptus grandis GN=EUGRSUZ_H03423 PE=3 SV=1) HSP 1 Score: 490.0 bits (1260), Expect = 1.8e-135 Identity = 244/261 (93.49%), Postives = 252/261 (96.55%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. TrEMBL
Match: A0A0L9TAL1_PHAAN (40S ribosomal protein S3a OS=Phaseolus angularis GN=LR48_Vigan442s001900 PE=3 SV=1) HSP 1 Score: 480.3 bits (1235), Expect = 1.5e-132 Identity = 240/261 (91.95%), Postives = 250/261 (95.79%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. TrEMBL
Match: A0A0S3T6R9_PHAAN (40S ribosomal protein S3a OS=Vigna angularis var. angularis GN=Vigan.10G239300 PE=3 SV=1) HSP 1 Score: 480.3 bits (1235), Expect = 1.5e-132 Identity = 240/261 (91.95%), Postives = 250/261 (95.79%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. TAIR10
Match: AT3G04840.1 (AT3G04840.1 Ribosomal protein S3Ae) HSP 1 Score: 449.5 bits (1155), Expect = 1.4e-126 Identity = 223/262 (85.11%), Postives = 246/262 (93.89%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. TAIR10
Match: AT4G34670.1 (AT4G34670.1 Ribosomal protein S3Ae) HSP 1 Score: 448.4 bits (1152), Expect = 3.1e-126 Identity = 224/262 (85.50%), Postives = 242/262 (92.37%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. NCBI nr
Match: gi|449472057|ref|XP_004153483.1| (PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus]) HSP 1 Score: 519.6 bits (1337), Expect = 3.1e-144 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. NCBI nr
Match: gi|659096858|ref|XP_008449325.1| (PREDICTED: 40S ribosomal protein S3a-like [Cucumis melo]) HSP 1 Score: 519.2 bits (1336), Expect = 4.1e-144 Identity = 259/260 (99.62%), Postives = 260/260 (100.00%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. NCBI nr
Match: gi|449432676|ref|XP_004134125.1| (PREDICTED: 40S ribosomal protein S3a [Cucumis sativus]) HSP 1 Score: 505.4 bits (1300), Expect = 6.1e-140 Identity = 253/261 (96.93%), Postives = 258/261 (98.85%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. NCBI nr
Match: gi|659076341|ref|XP_008438626.1| (PREDICTED: 40S ribosomal protein S3a [Cucumis melo]) HSP 1 Score: 505.4 bits (1300), Expect = 6.1e-140 Identity = 253/261 (96.93%), Postives = 258/261 (98.85%), Query Frame = 1
BLAST of Cucsa.168250.1 vs. NCBI nr
Match: gi|702444159|ref|XP_010024230.1| (PREDICTED: 40S ribosomal protein S3a-like [Eucalyptus grandis]) HSP 1 Score: 490.0 bits (1260), Expect = 2.6e-135 Identity = 244/261 (93.49%), Postives = 252/261 (96.55%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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