Cucsa.153260.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCCCCCCATTTCCCAATACTCCACACACCTCTGATCCTCCTCCTCCTCCCTCTCCCTCTCCCTCATCGTTTCAATGGCTCCCTCATCAGCTCATTTCTTGTTTGCTGCCTTGGCTCTCCTTTCTGTGGGGTTCGTGAGCTCCAACATAGACCAAGACAGGGCGGAGTGTGCGGACCAGGTGGTTGGCCTCGCTACTTGCTTGCCATATGTGGGCGGTGAGGCTAAGGCACCCACCCCTGACTGCTGTAGTGGGCTTAAGCTTGTGCTTGATAAGAGTAGGAAATGTCTTTGTGTGTTGATTAAGGACCGTGATGACCCTAGCCTTGGACTCAAAGTTAACCTTTCCCTTGCCCTTGGTCTTCCTTCTGCTTGTCACGCCCCTGCCAACATCAAAGATTGCGTCGGTATGCTTTCTTCCTTTTTAGATGATATATATTTAAATTTAGTTAAACTTTTGGATCAATAGATTGTTTAAGACCGTATCACATTATTATCTTGTAATGTTAGATGATATATATTTAAATTTACTTTCACTCACATGTATAAACTTTTAGTTTAACGGGTGATTTAAGACTTTGATTATTGGTAATGAAAAAAATACTTAATATTCAACTTGAGGTTTATCTTTCCTTGTGGATCTTCTTATTTGTTATGTAATTAGTTCTTCTTAGTTTGTGTTGGACTTCATCTATTTTTGTGCAATTCACTCTAAAAAATTTTGATTTTTTTAAAAACATTAAATTGTTATTTTCTTTCCTATGTATAGATGATGCGTCTAATCACTTTTCTTTTAATTCTTATCGTTTCTGCAAGATGAGATATGGTATAGAAATTAGATGTCTGTCACGTCGATGTGCTTTTAAAAATAGAATGAGATACAGAGATATTAACATAGGGTTTAACAGTATTTATAGTATGAAAATATAGAAAGTATTATACTTCTATTTATTGTACCTAAGTATTTTCCCTCAATTAGTTGTTTATACTACACGAGCTATACTAATAAAGAAAAATTGAAATACTGATTTTTCTATTTATTGTACATCATGTCGTGTTTCTAAAAATAAGATGAGACTCACGAATATTAATATAAGAAGTTCATTAATAGCGTGTCGATAAGAAATATATGATACTCTTGATACTAAAAAATTTCTAAAAAGGACGATACACTTAAGTATGGGTCTTTTCATACTTAATTATCGCTATTATTATTTTGTAATGGAGCATGTATATTATTCGTGTGAATATAGGGCTTCTCCATCTCTCGCCAAACTCCCCAGAGGCTAAGGATTTTTTGGGTTCGCCCAACTCCAAGGAAACTAACACTTCTACGCCAGCACATGCTACTCCGGGTATTAGCTCAAAACCCTTCTTCTTTTCAAAAAAAATTATTTAAATTTCTCAACTGCCAAAAACAAATTAATTTCGGACCCGTTTGAATTTACTTGAGAAAACTTGATTTTTCTAAACACTTTTAACAAAAATTGTTTAATAAGTGCACTTTAAAAGATCTCTAAAATATCTTAATACTTACATTCAACACTTGAAAATGTATTCCAATATCACTAAATTAAGATGGGTGATATGTTGTTTTAATAAATGAATACCTTGGCTACAAGTGCATGCATCATGTTCGTGTTGAGGATCGATACTACACTATAATATTTATAATATAGATGAGTTACACCGTTCTCGAATAAAAAAAGAAGATTAACTATGGATTACAACTTAGAAGTGAAGTAAATGTAATTTTTTGTTTGTGTTAAATTGTTGCAGTTAGTGGGAGTTCTTCACAAAACTCAGAAGTGAAGAATGATGGAACGAAGAGGAATCAGTGGTTGGGTGTGGAGATGTTCATTTGGTTCATTACTTCATCGTTTCTATTCACTTGCATTTGGTAAATTAAAAAAAAAAACAGAAAAAAAAAAAGAGAAAATAAAATGTTCCATTAGTTAATTATTATAAAATTATTTCATATATGTTTGCTTAGCTATAATTAATTTTATGATAATTATCTTGAGTGAGATCATGATATAAACTCTTTCAAATTTGTTTCATAACCATTACTTTTAAATGTAGTTTCTAATATTTAATTT GCCCCCCATTTCCCAATACTCCACACACCTCTGAtcctcctcctcctccctctccctctccctcATCGTTTCAATGGCTCCCTCATCAGCTCATTTCTTGTTTGCTGCCTTGGCTCTCCTTTCTGTGGGGTTCGTGAGCTCCAACATAGACCAAGACAGGGCGGAGTGTGCGGACCAGGTGGTTGGCCTCGCTACTTGCTTGCCATATGTGGGCGGTGAGGCTAAGGCACCCACCCCTGACTGCTGTAGTGGGCTTAAGCTTGTGCTTGATAAGAGTAGGAAATGTCTTTGTGTGTTGATTAAGGACCGTGATGACCCTAGCCTTGGACTCAAAGTTAACCTTTCCCTTGCCCTTGGTCTTCCTTCTGCTTGTCACGCCCCTGCCAACATCAAAGATTGCGTCGGGCTTCTCCATCTCTCGCCAAACTCCCCAGAGGCTAAGGATTTTTTGGGTTCGCCCAACTCCAAGGAAACTAACACTTCTACGCCAGCACATGCTACTCCGGTTAGTGGGAGTTCTTCACAAAACTCAGAAGTGAAGAATGATGGAACGAAGAGGAATCAGTGGTTGGGTGTGGAGATGTTCATTTGGTTCATTACTTCATCGTTTCTATTCACTTGCATTTGGTAAATTaaaaaaaaaaacagaaaaaaaaaaagagaaaataaaaTGTTCCATTAGttaattattataaaattatttCATATATGTTTGCTTAGCTATAATTAATTTTATGATAATTATCTTGAGTGAGATCATGATATAAACTCTTTCAAATTTGTTTCATAACCATTACTTTTAAATGTAGTTTCTAATATTTAATTT ATGGCTCCCTCATCAGCTCATTTCTTGTTTGCTGCCTTGGCTCTCCTTTCTGTGGGGTTCGTGAGCTCCAACATAGACCAAGACAGGGCGGAGTGTGCGGACCAGGTGGTTGGCCTCGCTACTTGCTTGCCATATGTGGGCGGTGAGGCTAAGGCACCCACCCCTGACTGCTGTAGTGGGCTTAAGCTTGTGCTTGATAAGAGTAGGAAATGTCTTTGTGTGTTGATTAAGGACCGTGATGACCCTAGCCTTGGACTCAAAGTTAACCTTTCCCTTGCCCTTGGTCTTCCTTCTGCTTGTCACGCCCCTGCCAACATCAAAGATTGCGTCGGGCTTCTCCATCTCTCGCCAAACTCCCCAGAGGCTAAGGATTTTTTGGGTTCGCCCAACTCCAAGGAAACTAACACTTCTACGCCAGCACATGCTACTCCGGTTAGTGGGAGTTCTTCACAAAACTCAGAAGTGAAGAATGATGGAACGAAGAGGAATCAGTGGTTGGGTGTGGAGATGTTCATTTGGTTCATTACTTCATCGTTTCTATTCACTTGCATTTGGTAA MAPSSAHFLFAALALLSVGFVSSNIDQDRAECADQVVGLATCLPYVGGEAKAPTPDCCSGLKLVLDKSRKCLCVLIKDRDDPSLGLKVNLSLALGLPSACHAPANIKDCVGLLHLSPNSPEAKDFLGSPNSKETNTSTPAHATPVSGSSSQNSEVKNDGTKRNQWLGVEMFIWFITSSFLFTCIW*
BLAST of Cucsa.153260.1 vs. Swiss-Prot
Match: YLS3_ARATH (Protein YLS3 OS=Arabidopsis thaliana GN=YLS3 PE=2 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 1.4e-37 Identity = 85/194 (43.81%), Postives = 118/194 (60.82%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. Swiss-Prot
Match: LTPG1_ARATH (Non-specific lipid transfer protein GPI-anchored 1 OS=Arabidopsis thaliana GN=LTPG1 PE=1 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 3.6e-09 Identity = 37/133 (27.82%), Postives = 62/133 (46.62%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. TrEMBL
Match: A0A0A0KZ48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280560 PE=4 SV=1) HSP 1 Score: 380.9 bits (977), Expect = 8.6e-103 Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. TrEMBL
Match: A0A067FA15_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029705mg PE=4 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 5.8e-51 Identity = 101/176 (57.39%), Postives = 131/176 (74.43%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. TrEMBL
Match: V4U4P0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016842mg PE=4 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 5.8e-51 Identity = 101/176 (57.39%), Postives = 131/176 (74.43%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. TrEMBL
Match: A0A061GSH0_THECC (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative OS=Theobroma cacao GN=TCM_040200 PE=3 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 1.9e-49 Identity = 102/170 (60.00%), Postives = 128/170 (75.29%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. TrEMBL
Match: V7D2S1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G268300g PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 2.1e-48 Identity = 97/153 (63.40%), Postives = 119/153 (77.78%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. TAIR10
Match: AT2G44300.1 (AT2G44300.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 167.5 bits (423), Expect = 7.6e-42 Identity = 90/204 (44.12%), Postives = 124/204 (60.78%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. TAIR10
Match: AT1G55260.1 (AT1G55260.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 166.0 bits (419), Expect = 2.2e-41 Identity = 82/178 (46.07%), Postives = 116/178 (65.17%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. TAIR10
Match: AT2G44290.1 (AT2G44290.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 157.5 bits (397), Expect = 7.8e-39 Identity = 85/194 (43.81%), Postives = 118/194 (60.82%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. TAIR10
Match: AT3G58550.1 (AT3G58550.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 126.7 bits (317), Expect = 1.5e-29 Identity = 71/169 (42.01%), Postives = 99/169 (58.58%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. TAIR10
Match: AT1G03103.1 (AT1G03103.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13 Identity = 42/140 (30.00%), Postives = 65/140 (46.43%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. NCBI nr
Match: gi|778692985|ref|XP_011653558.1| (PREDICTED: protein YLS3 [Cucumis sativus]) HSP 1 Score: 380.9 bits (977), Expect = 1.2e-102 Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. NCBI nr
Match: gi|659097759|ref|XP_008449799.1| (PREDICTED: protein YLS3 [Cucumis melo]) HSP 1 Score: 351.3 bits (900), Expect = 1.0e-93 Identity = 173/186 (93.01%), Postives = 180/186 (96.77%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. NCBI nr
Match: gi|567907033|ref|XP_006445830.1| (hypothetical protein CICLE_v10016842mg [Citrus clementina]) HSP 1 Score: 208.8 bits (530), Expect = 8.4e-51 Identity = 101/176 (57.39%), Postives = 131/176 (74.43%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. NCBI nr
Match: gi|590582837|ref|XP_007014734.1| (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative [Theobroma cacao]) HSP 1 Score: 203.8 bits (517), Expect = 2.7e-49 Identity = 102/170 (60.00%), Postives = 128/170 (75.29%), Query Frame = 1
BLAST of Cucsa.153260.1 vs. NCBI nr
Match: gi|593801598|ref|XP_007163836.1| (hypothetical protein PHAVU_001G268300g [Phaseolus vulgaris]) HSP 1 Score: 200.3 bits (508), Expect = 3.0e-48 Identity = 97/153 (63.40%), Postives = 119/153 (77.78%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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