Cucsa.152690.2 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GACGTTCTAAAACTAGAAAATTAGGAAGGTATAAGGAAAAGAAGGAACCCTAATTCATCTGCTTTTTCTCCGACTCACGTTCAACCGCCCAGCCCCTTCCTTGTCTCCGGTAGCATCTCGATGACAGTCCTTTGAGATAAACGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAACTGATTTGCTGATTAAAAGGAGCGATATGTGTATTATTTGCGGAATCATCTTCTGAACAATTCATCCTAGGGATAAGGTTGAAGATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGGTGCGTATCATTTATTCTGCACTTTAATACTTCGGGGTGGAAAATATGAATGAGTTAGAGTACCTCTTGTTAATAAACTTTCCACGCATTGAAACATCAAGAAAAATATTTGCATTTTCCATTTGAGGAAATTCAGTGTCCTAGATTAACTTTACATGCATTCTGTCTAGTGTCTACTGGGTAAGTAGCCGAGAATGCAGTATCTACTTGAAGCACCCTTGTGTTGAGGTTGGAAGAGAAAGAAAAATCAAGGCAGCAGGTTTCATGCTACTTGTTTGAGATGAGTACATATTCTAATGCTATGATATATGATACAATCCACAAATTTGGTATTGAAAACTTCAGTCTATTTTTCCCATCTAACATCAAATACTACTGAGGTAGGTATGGCTATTCGATCGGCAATAAAaCAAaGTACTATGGTTCTTTTTTTtAGTTATCCTTTtACTTTTtAACTGCTTGTTATGTATATTTAGGCCCACTTTAAGGTGTTCTTTAAGTGTTGATATTTTGGAATCTGATACTCAAACCCTGTATTTGAGCAATTTTGCTGAGAGAGTTTTGATTTTCACAAGTTTCCATCGTCGAACTCAGCAATGCATTTAGGTTTGTTCTTCCGAATAATCTTTTAAGGATTATATAGAATTATAAAATAGACTGATTCTGTCCACGTTAAGTTTGAAAATCTCAGTGTGATAGTATTAAGTAATAGAAACGTACAAAGTTTTCCAACTCTGCTGGACTTTTAATGACTTCTAGATGTGATTCTACAACGAGTTAGATTTGTTCTATATATTCTCTCATTTTCTGTATTTTTTACGTTTACCTCTTGATTGGTATGTTATTTTATTAGTTTTTTGAGGAGTTGCAAGGAGCCAACTGAGGAATTTCTCCTCCATCCACTTTTCTCTCTCGGAGAAATGGCTGTTTTCATAGTAGGTTGGAGTATATGCTAATTTGTGGGGTTTGGGGTGCGAGAGAAATGATAGAATCTTCAAGGGAGAAATAACCGAATCTTGGATCTTGAAGATTCGTTTTTAATAATTAATCGCTTAGTCACATTTCACTTGATTGGAGCCCTTCCCCTTCTTATAGTTAGCTACACTTTCTGTGAACACCATTCTGTATGGTTATGTATTCTTTCACCTTGTTTTTCAACAAAAGTCTAGTTGTACATCAAAAACAAAATTTATCAGCATTTTGAACAAAAGAAAGGGATGGGATCTTGCTTCATTTATTTGCAATTATCCAATTGAACATGTGTACCTTTTCTTAAAAAAaTTATTGTCAATATTTTCTAGCACAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGTATGAATTCTCATATTCTGATGTTGATATAAGATCAAGAGTTGTTGTGTTGTTTACTTCTCTCAGTATGTATTTCAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGGTGTTATCTCTGTCTTCTTGTTAATCTCTACATTTTCAAACCGTGCCCCGGTGTGGTTACATAAGACTGATGTTGTTTGGCTGGCGACTTACTTTAGTTGAAATAATTCTATTTAATAATTTTAGCCCTAAATGTAAATTTCTCATGTTCACTTCATTCTATTGAACATAAGGATATTTTGCGCAACTAACAATCTTACCCAAACTGTGTTTCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAATGAAAGCAGATTGAAAGAGTGGGGGAATTTTCCTATGCTACCAATGTATGGAAATTTTCCGTATCTCCCCGTGCATTTCTGCCGCATGACTTTTTATTTTTATATTACATATATGTAGAAATATACGTGAATCTACAGTTTATGGAATAAAAATACTTTTATCCATTGTATTAATTTTTTTTtATGACGGATTGATATTTTCATCAATATTTCTACGTTTTC GACGTTCTAAAACTAGAAAATTAGGAAGGTATAAGGAAAAGAAGGAACCCTAATTCATCTGCTTTTTCTCCGACTCACGTTCAACCGCCCAGCCCCTTCCTTGTCTCCGGTAGCATCTCGATGACAGTCCTTTGAGATAAACGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAACTGATTTGCTGATTAAAAGGAGCGATATGTGTATTATTTGCGGAATCATCTTCTGAACAATTCATCCTAGGGATAAGGTTGAAGATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAATGAAAGCAGATTGAAAGAGTGGGGGAATTTTCCTATGCTACCAATGTATGGAAATTTTCCGTATCTCCCCGTGCATTTCTGCCGCATGACTTTTTATTTTTATATTACATATATGTAGAAATATACGTGAATCTACAGTTTATGGAATAAAAATACTTTTATCCATTGTATTAATTTTTTTTTATGACGGATTGATATTTTCATCAATATTTCTACGTTTTC ATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAATGAAAGCAGATTGA MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLMKAD*
BLAST of Cucsa.152690.2 vs. Swiss-Prot
Match: MED21_ARATH (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana GN=MED21 PE=1 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 1.0e-53 Identity = 109/139 (78.42%), Postives = 119/139 (85.61%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. Swiss-Prot
Match: MED21_DANRE (Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio GN=med21 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 7.2e-07 Identity = 38/136 (27.94%), Postives = 66/136 (48.53%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. Swiss-Prot
Match: MED21_ANOGA (Mediator of RNA polymerase II transcription subunit 21 OS=Anopheles gambiae GN=MED21 PE=3 SV=5) HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06 Identity = 38/148 (25.68%), Postives = 70/148 (47.30%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. Swiss-Prot
Match: MED21_BOVIN (Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus GN=MED21 PE=2 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 4.7e-06 Identity = 36/136 (26.47%), Postives = 66/136 (48.53%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. TrEMBL
Match: A0A0A0KZ00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268030 PE=4 SV=1) HSP 1 Score: 264.6 bits (675), Expect = 6.7e-68 Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. TrEMBL
Match: M1BD21_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016459 PE=4 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 1.3e-58 Identity = 119/138 (86.23%), Postives = 124/138 (89.86%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. TrEMBL
Match: A0A0V0HDL0_SOLCH (Putative mediator of RNA polymerase II transcription subunit 21-like OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 1.3e-58 Identity = 119/138 (86.23%), Postives = 124/138 (89.86%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. TrEMBL
Match: K4B9R4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 6.3e-58 Identity = 118/138 (85.51%), Postives = 123/138 (89.13%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. TrEMBL
Match: A0A0S2LKQ9_REHGL (Mediator of RNA polymerase II transcription subunit 21 OS=Rehmannia glutinosa GN=Med21 PE=2 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 9.1e-57 Identity = 118/139 (84.89%), Postives = 126/139 (90.65%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. TAIR10
Match: AT4G04780.1 (AT4G04780.1 mediator 21) HSP 1 Score: 210.7 bits (535), Expect = 5.8e-55 Identity = 109/139 (78.42%), Postives = 119/139 (85.61%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. NCBI nr
Match: gi|449463842|ref|XP_004149640.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus]) HSP 1 Score: 264.6 bits (675), Expect = 9.6e-68 Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. NCBI nr
Match: gi|659097951|ref|XP_008449895.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]) HSP 1 Score: 261.2 bits (666), Expect = 1.1e-66 Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. NCBI nr
Match: gi|698553696|ref|XP_009770008.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21-like isoform X1 [Nicotiana sylvestris]) HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58 Identity = 120/138 (86.96%), Postives = 124/138 (89.86%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. NCBI nr
Match: gi|565362742|ref|XP_006348104.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Solanum tuberosum]) HSP 1 Score: 233.8 bits (595), Expect = 1.8e-58 Identity = 119/138 (86.23%), Postives = 124/138 (89.86%), Query Frame = 1
BLAST of Cucsa.152690.2 vs. NCBI nr
Match: gi|970005966|ref|XP_015063828.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Solanum pennellii]) HSP 1 Score: 232.3 bits (591), Expect = 5.3e-58 Identity = 118/138 (85.51%), Postives = 123/138 (89.13%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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