Cucsa.119800.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCAAAAGCGAATTGAGGAAAAGTTGGAAACGGTTGATCAAGAGATATCTGGCATTCGGGCAGAGTTACATGGATTACCATCTATTAAGGAAGATATTTCATTGTTGGCAAAAAGTATTGAAAGGCTGGGTGTTCAGGCTGAACAGCAACAACAGCAGCAACAGACTTTCATGAAATATATTGAGGGAATGACTAAGGGAAAGACAAGGGAAGAAATTCCAGAAGGTTCGTCCGACAAGAAAGAAACTATGATTGATGTCAGTGATTCATTTGTGATGGGAGGAAAATCTGAAGAAAAACACACCAAGTTGGAAGGAGAAGAATCTGTAGGGGACCAAAGCAAATTCAAGAAAATTGAAATGCCAGTTTTTGCGGGTGCTGATCCGGATTTATGGTTATTTAGAGCAGAACGTTATTTTCAGATACACAAACTTACTGAATCAGAGAAGATAACGGTGTCAATCATTAGTTTTGATGGAGCAGCTTTGGATTGGTATAGGTCTCGTGAAGATCGGGAACCATTTACCAACTGGGAAGATTTAAAGCAGAGATTGATTATTCGATTCAGACAGGTCATGAGGGATCAATCTTAG atggctcaaaagcgaattgaggaaaagttggaaacggttgatcaagagatatctggcattcgggcagagttacatggattaccatctattaaggaagatatttcattgttggcaaaaagtattgaaaggctgggtgttcaggctgaacagcaacaacagcagcaacagactttcatgaaatatattgagggaatgactaagggaaagacaagggaagaaattccagaaggttcgtccgacaagaaagaaactatgattgatgtcagtgattcatttgtgatgggaggaaaatctgaagaaaaacacaccaagttggaaggagaagaATCTGTAGGGGACCAAAGCAAATTCAAGAAAATTGAAATGCCAGTTTTTGCGGGTGCTGATCCGGATTTATGGTTATTTAGAGCAGAACGTTATTTTCAGATACACAAACTTACTGAATCAGAGAAGATAACGGTGTCAATCATTAGTTTTGATGGAGCAGCTTTGGATTGGTATAGGTCTCGTGAAGATCGGGAACCATTTACCAACTGGGAAGATTTAAAGCAGAGATTGATTATTCGATTCAGACAGGTCATGAGGGATCAATCTTAG ATGGCTCAAAAGCGAATTGAGGAAAAGTTGGAAACGGTTGATCAAGAGATATCTGGCATTCGGGCAGAGTTACATGGATTACCATCTATTAAGGAAGATATTTCATTGTTGGCAAAAAGTATTGAAAGGCTGGGTGTTCAGGCTGAACAGCAACAACAGCAGCAACAGACTTTCATGAAATATATTGAGGGAATGACTAAGGGAAAGACAAGGGAAGAAATTCCAGAAGGTTCGTCCGACAAGAAAGAAACTATGATTGATGTCAGTGATTCATTTGTGATGGGAGGAAAATCTGAAGAAAAACACACCAAGTTGGAAGGAGAAGAATCTGTAGGGGACCAAAGCAAATTCAAGAAAATTGAAATGCCAGTTTTTGCGGGTGCTGATCCGGATTTATGGTTATTTAGAGCAGAACGTTATTTTCAGATACACAAACTTACTGAATCAGAGAAGATAACGGTGTCAATCATTAGTTTTGATGGAGCAGCTTTGGATTGGTATAGGTCTCGTGAAGATCGGGAACCATTTACCAACTGGGAAGATTTAAAGCAGAGATTGATTATTCGATTCAGACAGGTCATGAGGGATCAATCTTAG MAQKRIEEKLETVDQEISGIRAELHGLPSIKEDISLLAKSIERLGVQAEQQQQQQQTFMKYIEGMTKGKTREEIPEGSSDKKETMIDVSDSFVMGGKSEEKHTKLEGEESVGDQSKFKKIEMPVFAGADPDLWLFRAERYFQIHKLTESEKITVSIISFDGAALDWYRSREDREPFTNWEDLKQRLIIRFRQVMRDQS*
BLAST of Cucsa.119800.1 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20 Identity = 67/191 (35.08%), Postives = 101/191 (52.88%), Query Frame = 1
BLAST of Cucsa.119800.1 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 2.8e-19 Identity = 64/193 (33.16%), Postives = 102/193 (52.85%), Query Frame = 1
BLAST of Cucsa.119800.1 vs. TrEMBL
Match: A5C0Y9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012977 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.2e-16 Identity = 59/177 (33.33%), Postives = 98/177 (55.37%), Query Frame = 1
BLAST of Cucsa.119800.1 vs. TrEMBL
Match: E2DMZ5_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 1.9e-15 Identity = 59/188 (31.38%), Postives = 99/188 (52.66%), Query Frame = 1
BLAST of Cucsa.119800.1 vs. TrEMBL
Match: E5GCI2_CUCME (Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 9.4e-15 Identity = 42/112 (37.50%), Postives = 70/112 (62.50%), Query Frame = 1
BLAST of Cucsa.119800.1 vs. TAIR10
Match: AT1G67020.1 (AT1G67020.1 unknown protein) HSP 1 Score: 61.6 bits (148), Expect = 6.2e-10 Identity = 41/166 (24.70%), Postives = 75/166 (45.18%), Query Frame = 1
BLAST of Cucsa.119800.1 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo]) HSP 1 Score: 183.7 bits (465), Expect = 3.1e-43 Identity = 95/198 (47.98%), Postives = 139/198 (70.20%), Query Frame = 1
BLAST of Cucsa.119800.1 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo]) HSP 1 Score: 176.8 bits (447), Expect = 3.8e-41 Identity = 89/198 (44.95%), Postives = 134/198 (67.68%), Query Frame = 1
BLAST of Cucsa.119800.1 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo]) HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40 Identity = 89/192 (46.35%), Postives = 131/192 (68.23%), Query Frame = 1
BLAST of Cucsa.119800.1 vs. NCBI nr
Match: gi|659118578|ref|XP_008459193.1| (PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo]) HSP 1 Score: 151.0 bits (380), Expect = 2.2e-33 Identity = 81/191 (42.41%), Postives = 121/191 (63.35%), Query Frame = 1
BLAST of Cucsa.119800.1 vs. NCBI nr
Match: gi|307136196|gb|ADN34034.1| (gypsy/ty3 element polyprotein [Cucumis melo subsp. melo]) HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20 Identity = 67/191 (35.08%), Postives = 101/191 (52.88%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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