Cucsa.119800 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.119800
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTy3/gypsy retrotransposon protein
Locationscaffold00998 : 1726401 .. 1726997 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAAAAGCGAATTGAGGAAAAGTTGGAAACGGTTGATCAAGAGATATCTGGCATTCGGGCAGAGTTACATGGATTACCATCTATTAAGGAAGATATTTCATTGTTGGCAAAAAGTATTGAAAGGCTGGGTGTTCAGGCTGAACAGCAACAACAGCAGCAACAGACTTTCATGAAATATATTGAGGGAATGACTAAGGGAAAGACAAGGGAAGAAATTCCAGAAGGTTCGTCCGACAAGAAAGAAACTATGATTGATGTCAGTGATTCATTTGTGATGGGAGGAAAATCTGAAGAAAAACACACCAAGTTGGAAGGAGAAGAATCTGTAGGGGACCAAAGCAAATTCAAGAAAATTGAAATGCCAGTTTTTGCGGGTGCTGATCCGGATTTATGGTTATTTAGAGCAGAACGTTATTTTCAGATACACAAACTTACTGAATCAGAGAAGATAACGGTGTCAATCATTAGTTTTGATGGAGCAGCTTTGGATTGGTATAGGTCTCGTGAAGATCGGGAACCATTTACCAACTGGGAAGATTTAAAGCAGAGATTGATTATTCGATTCAGACAGGTCATGAGGGATCAATCTTAG

mRNA sequence

atggctcaaaagcgaattgaggaaaagttggaaacggttgatcaagagatatctggcattcgggcagagttacatggattaccatctattaaggaagatatttcattgttggcaaaaagtattgaaaggctgggtgttcaggctgaacagcaacaacagcagcaacagactttcatgaaatatattgagggaatgactaagggaaagacaagggaagaaattccagaaggttcgtccgacaagaaagaaactatgattgatgtcagtgattcatttgtgatgggaggaaaatctgaagaaaaacacaccaagttggaaggagaagaATCTGTAGGGGACCAAAGCAAATTCAAGAAAATTGAAATGCCAGTTTTTGCGGGTGCTGATCCGGATTTATGGTTATTTAGAGCAGAACGTTATTTTCAGATACACAAACTTACTGAATCAGAGAAGATAACGGTGTCAATCATTAGTTTTGATGGAGCAGCTTTGGATTGGTATAGGTCTCGTGAAGATCGGGAACCATTTACCAACTGGGAAGATTTAAAGCAGAGATTGATTATTCGATTCAGACAGGTCATGAGGGATCAATCTTAG

Coding sequence (CDS)

ATGGCTCAAAAGCGAATTGAGGAAAAGTTGGAAACGGTTGATCAAGAGATATCTGGCATTCGGGCAGAGTTACATGGATTACCATCTATTAAGGAAGATATTTCATTGTTGGCAAAAAGTATTGAAAGGCTGGGTGTTCAGGCTGAACAGCAACAACAGCAGCAACAGACTTTCATGAAATATATTGAGGGAATGACTAAGGGAAAGACAAGGGAAGAAATTCCAGAAGGTTCGTCCGACAAGAAAGAAACTATGATTGATGTCAGTGATTCATTTGTGATGGGAGGAAAATCTGAAGAAAAACACACCAAGTTGGAAGGAGAAGAATCTGTAGGGGACCAAAGCAAATTCAAGAAAATTGAAATGCCAGTTTTTGCGGGTGCTGATCCGGATTTATGGTTATTTAGAGCAGAACGTTATTTTCAGATACACAAACTTACTGAATCAGAGAAGATAACGGTGTCAATCATTAGTTTTGATGGAGCAGCTTTGGATTGGTATAGGTCTCGTGAAGATCGGGAACCATTTACCAACTGGGAAGATTTAAAGCAGAGATTGATTATTCGATTCAGACAGGTCATGAGGGATCAATCTTAG

Protein sequence

MAQKRIEEKLETVDQEISGIRAELHGLPSIKEDISLLAKSIERLGVQAEQQQQQQQTFMKYIEGMTKGKTREEIPEGSSDKKETMIDVSDSFVMGGKSEEKHTKLEGEESVGDQSKFKKIEMPVFAGADPDLWLFRAERYFQIHKLTESEKITVSIISFDGAALDWYRSREDREPFTNWEDLKQRLIIRFRQVMRDQS*
Homology
[Close]
BLAST of Cucsa.119800 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 67/191 (35.08%), Postives = 101/191 (52.88%), Query Frame = 1 

Query: 1   MAQKRIEEKLETVDQEISGIRAELHGLPSIKEDISLLAKSIERLGVQAEQQQQQQQTFMK 60
           M QK I+E L+  + EI  I+ E+  +P +++ +  +   +  +    E  Q+Q   F  
Sbjct: 1   MMQKLIKECLDASEAEIEAIKKEVQRIPVLEKTMEKMHAMLTEM---YEDCQRQPGGFEL 60

Query: 61  YIEGMTKGKTREEIPEGSSDKKETMIDVSDSFVMGGKSEEKHTKLEGEESVG-DQSKFKK 120
                 K K R E             D+ D        EE  T L  E   G D+ KFKK
Sbjct: 61  TRVSTGKRKIRTE-------------DLVDG------DEEGETSLSLEPGAGQDRIKFKK 120

Query: 121 IEMPVFAGADPDLWLFRAERYFQIHKLTESEKITVSIISFDGAALDWYRSREDREPFTNW 180
           +EMPVF G DPD W+++AE YFQ+H L E EK+ ++I+S +G  L W+R  E+R+ F +W
Sbjct: 121 LEMPVFNGEDPDGWIYKAEYYFQMHLLNEQEKLKIAIVSMEGKGLCWFRWAENRKRFRSW 169

Query: 181 EDLKQRLIIRF 191
           ++LK+R+  RF
Sbjct: 181 KELKERMYNRF 169

[Close]
BLAST of Cucsa.119800 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-19
Identity = 64/193 (33.16%), Postives = 102/193 (52.85%), Query Frame = 1 

Query: 1   MAQKRIEEKLETVDQEISGIRAELHGLPSI-KEDISLLAKSIERLGV-QAEQQQQQQQTF 60
           MAQKR E +++ +++E+  IR E+  LP + K  +    K++  L + +      Q++  
Sbjct: 680 MAQKRNEGRVDCLEKEVGEIREEMQRLPRMEKTSLEETQKAVAALSLGRNTTTAAQREDR 739

Query: 61  MKYIEGMTKGKTREEIPEGSSDKKETMIDVSDSFVMGGKSEEKHTKLEGEESVGDQSKFK 120
             +I G+ +       P G           SD    GG  E + +              +
Sbjct: 740 AGWIPGVWE-------PSGGGM-------ASDEMRRGGNGEWRGS--------------R 799

Query: 121 KIEMPVFAGADPDLWLFRAERYFQIHKLTESEKITVSIISFDGAALDWYRSREDREPFTN 180
           ++EMPVF G +PD W+FRA+RYF  + LTE EK+  + +S DG AL WY+  + RE F +
Sbjct: 800 RVEMPVFTGENPDGWIFRADRYFATYGLTEEEKLVAAAMSLDGDALSWYQWTDSREVFGS 844

Query: 181 WEDLKQRLIIRFR 192
           WE+LK+RL++RFR
Sbjct: 860 WENLKRRLLLRFR 844

[Close]
BLAST of Cucsa.119800 vs. TrEMBL
Match: A5C0Y9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012977 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-16
Identity = 59/177 (33.33%), Postives = 98/177 (55.37%), Query Frame = 1 

Query: 1   MAQKRIEEKLETVDQEISGIRAELHGLPSIKEDISLLAKSIERLGVQAEQQQQQQQTFMK 60
           MAQK+ E +++ +++++  IR E+H LP +++ +  LA+++ R+ +Q+ ++ Q+    + 
Sbjct: 70  MAQKKNEGRVDLLEKKVGEIREEMHRLPGMEKAVMDLAQNVMRV-LQSLEETQKAVAALS 129

Query: 61  YIEGMTKGKTREEIPEGSSDKKETMIDVSDSFVMGGKSEEKHTKLEGE-ESVGDQSKFKK 120
               MT    RE       D    ++ V +    GG      T+  G  E  G Q     
Sbjct: 130 LGWVMTTAAQRE-------DHARWILGVGEP--SGGWIASNETRRGGNWEGHGGQW---- 189

Query: 121 IEMPVFAGADPDLWLFRAERYFQIHKLTESEKITVSIISFDGAALDWYRSREDREPF 177
           +EMPVF G +PD W+FRA RYF  ++LTE EK+ V+ ++ DG AL WY+  + RE F
Sbjct: 190 VEMPVFTGENPDGWIFRANRYFATYRLTEEEKLVVATMNLDGDALSWYQWTDSREAF 232

[Close]
BLAST of Cucsa.119800 vs. TrEMBL
Match: E2DMZ5_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-15
Identity = 59/188 (31.38%), Postives = 99/188 (52.66%), Query Frame = 1 

Query: 8   EKLETVDQEISGIRAELHGLPSIKEDISLLAKSIERLGVQAEQQQQQQQTFMKYIEGMTK 67
           ++L+ ++Q I+ +RA L G     E  S + K++E L      Q+         +E  T+
Sbjct: 8   QRLDQLEQGIADLRASLSG-----EVASAVGKAVETL------QETLATQIAVSLERATQ 67

Query: 68  GKTREE---IPEGSSDKKETMIDVSDSFVMGGKSEEKHTKLEGEESVGDQSKFKKIEMPV 127
            + REE   I E   ++++   +  D     G+ E       G    G   + KK+++PV
Sbjct: 68  -QLREEVAKIQERGDERRDERRENDD-----GEGEGFGGGFRG----GGSWRAKKLDLPV 127

Query: 128 FAGADPDLWLFRAERYFQIHKLTESEKITVSIISFDGAALDWYRSREDREPFTNWEDLKQ 187
           F+G +PD W+ RAER+FQ ++LTE EK+  +++S DG AL WY+    R P   W +++ 
Sbjct: 128 FSGNNPDGWIIRAERFFQFYRLTEDEKVEAAVVSLDGEALLWYQWENRRRPIHRWSEMRW 174

Query: 188 RLIIRFRQ 193
            L+ RFR+
Sbjct: 188 MLLRRFRE 174

[Close]
BLAST of Cucsa.119800 vs. TrEMBL
Match: E5GCI2_CUCME (Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.4e-15
Identity = 42/112 (37.50%), Postives = 70/112 (62.50%), Query Frame = 1 

Query: 80  DKKETMIDVSDSFVMGGKSEEKHTKLEGEESVGDQSKFKKIEMPVFAGADPDLWLFRAER 139
           + KE M+++  S    G  E + T      S  D+SK+KK+E+PVF G +P+ W++RAE 
Sbjct: 19  EMKEMMLNLLKSMESDGGRETETTPGFTVGS-SDRSKYKKLEIPVFNGENPETWIYRAEH 78

Query: 140 YFQIHKLTESEKITVSIISFDGAALDWYRSREDREPFTNWEDLKQRLIIRFR 192
           YF I++L + EK+ V+++SF    ++W+R   +R+    WEDLK+R+   F+
Sbjct: 79  YFDINELVDEEKVKVAVVSFGPDEVNWFRWSNNRKKVKTWEDLKRRMFEHFK 129

[Close]
BLAST of Cucsa.119800 vs. TAIR10
Match: AT1G67020.1 (AT1G67020.1 unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 6.2e-10
Identity = 41/166 (24.70%), Postives = 75/166 (45.18%), Query Frame = 1 

Query: 31  KEDISLLAKSIERLGVQAEQQQQQQQTFMKYIEGMTKGKTREEIPEGSSDKKETMIDVSD 90
           + ++ +L    +RL     Q +++ ++    +  +     R EI EG   K+    + S 
Sbjct: 21  ERNMKVLFGGFKRLCADKVQHEEKLESMDSVLRQVVATLERMEIREG---KRVEQGEHSC 80

Query: 91  SFVMGGKSEEKHTKLEGEESV---GDQSKFKKIEMPVFAGADPDLWLFRAERYFQIHKLT 150
                  S     +  GE  +      S  ++IEMPVF G+    W  + ER+F++ +  
Sbjct: 81  QSPRHSFSSSMPQRGAGESPILLDNRSSLIRRIEMPVFDGSGVYEWFSKVERFFRVGRYQ 140

Query: 151 ESEKITVSIISFDGAALDWYRSREDREPFTNWEDLKQRLIIRFRQV 194
           +S+K+ +  +S +G AL W+        F +W   +QRL+ RF  V
Sbjct: 141 DSDKLDLVALSLEGVALKWFLREMSTLEFRDWNSFEQRLLARFDPV 183

[Close]
BLAST of Cucsa.119800 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 3.1e-43
Identity = 95/198 (47.98%), Postives = 139/198 (70.20%), Query Frame = 1 

Query: 1   MAQKRIEEKLETVDQEISGIRAELHGLPSIKEDISLLAKSIERLGVQAEQQQQQQQTFMK 60
           M Q RIEE+LE +DQEI+G++ EL  +P+I+  +S +AKS+E + +Q+E+QQQ   T ++
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPAIEMSLSEIAKSLELMRLQSEKQQQLLFTIIE 60

Query: 61  YI--EGMTKGKTREEIPEGSSDKKETMIDVSDSF--VMGGKS---EEKHTKLEGEESVGD 120
               E  T  +   E P    +K +   D + S   +  G++   +    +++G++ V D
Sbjct: 61  TNSKERSTMSRLETESPAKEFEKMKGKEDDASSSKAIDSGRNFGADRNDRRIDGDDGVSD 120

Query: 121 QSKFKKIEMPVFAGADPDLWLFRAERYFQIHKLTESEKITVSIISFDGAALDWYRSREDR 180
           ++KFKKIEMPVF G DPD WLFRAERYFQIHKLT+SEK+ VS ISFDG AL+W+RS+E+R
Sbjct: 121 RNKFKKIEMPVFTGEDPDSWLFRAERYFQIHKLTDSEKMLVSTISFDGPALNWFRSQEER 180

Query: 181 EPFTNWEDLKQRLIIRFR 192
           + FT+W ++K+RL+IRFR
Sbjct: 181 DKFTSWSNMKERLLIRFR 198

[Close]
BLAST of Cucsa.119800 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 3.8e-41
Identity = 89/198 (44.95%), Postives = 134/198 (67.68%), Query Frame = 1 

Query: 1   MAQKRIEEKLETVDQEISGIRAELHGLPSIKEDISLLAKSIERLGVQAEQQQQQQQTFMK 60
           M Q RIEE+LE +DQEI+G++ EL  +P I+  ++ +AKS++ + +Q+E+QQQ   T ++
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPVIEVSLNEIAKSVDLMRLQSEKQQQLLFTIIE 60

Query: 61  YIE---GMTKGKTREEIPEGSSDKKETMIDVSDSFVMGG----KSEEKHTKLEGEESVGD 120
                  M  G+  E   +     K    D S S ++      +++    + + ++S  D
Sbjct: 61  TSSKERSMMSGQATEPTVKEFEKAKGKESDASSSRMIESDRNFRADGSERRNDSDDSFPD 120

Query: 121 QSKFKKIEMPVFAGADPDLWLFRAERYFQIHKLTESEKITVSIISFDGAALDWYRSREDR 180
           ++KFKKIEMP+F G DPD WLFRAERYFQIH+LTESEK+ VS +SFDG AL+WYRS+E+R
Sbjct: 121 RNKFKKIEMPIFTGEDPDSWLFRAERYFQIHRLTESEKLLVSTVSFDGPALNWYRSQEER 180

Query: 181 EPFTNWEDLKQRLIIRFR 192
           + FT+W ++K+RL++RFR
Sbjct: 181 DKFTSWSNMKERLLVRFR 198

[Close]
BLAST of Cucsa.119800 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 89/192 (46.35%), Postives = 131/192 (68.23%), Query Frame = 1 

Query: 1   MAQKRIEEKLETVDQEISGIRAELHGLPSIKEDISLLAKSIERLGVQAEQQQQQQQTFMK 60
           M Q RIEE++E+ +QE++GI+ EL  +P I+  +  L +++E + +Q+E+QQQ   ++M+
Sbjct: 1   MVQTRIEERMESFEQEVAGIKKELAKMPVIESTLIELTRNMEMMRLQSEKQQQAILSYME 60

Query: 61  YIEGMTKGKTREEIPEGSSDKKETMIDVSDSFVMGGKSEEKHTKL-EGEESVGDQSKFKK 120
            +    +    E + E  +    T+   +D        EE +TK  E +E+  D+SKFKK
Sbjct: 61  -MNAKERSMAGERMNESDTQNSPTVKSKNDKASSSRDVEEINTKKNEPDENSNDRSKFKK 120

Query: 121 IEMPVFAGADPDLWLFRAERYFQIHKLTESEKITVSIISFDGAALDWYRSREDREPFTNW 180
           +EMPVF G DP+ WLFRAERYFQIHKLTESEK+ VS I FDG AL+WYR++E+RE F +W
Sbjct: 121 VEMPVFTGEDPESWLFRAERYFQIHKLTESEKMLVSTICFDGPALNWYRAQEEREKFVSW 180

Query: 181 EDLKQRLIIRFR 192
            +LK+RL+IRF+
Sbjct: 181 TNLKERLLIRFQ 191

[Close]
BLAST of Cucsa.119800 vs. NCBI nr
Match: gi|659118578|ref|XP_008459193.1| (PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-33
Identity = 81/191 (42.41%), Postives = 121/191 (63.35%), Query Frame = 1 

Query: 4   KRIEEKLETVDQEISGIRAELHGLPSIKEDISLLAKSIERLGVQAEQQQQQQQTFMKYIE 63
           +++EE+++ V+QE       L  LP I E++ LL KSI+ +  Q  +QQQ     +KYIE
Sbjct: 3   RKMEERMDLVEQE-------LQRLPIIDENLPLLTKSIKEMNAQINKQQQ---VILKYIE 62

Query: 64  GMTKGKTRE-EIPEGSSDKKETMIDVSDSFVMGGKSEEKHTKLEGEESVGDQSKFKKIEM 123
           G+ +  +   +  EGS+   ++   +    V   K+  +H  +       D+SKFKK+EM
Sbjct: 63  GIIRDNSSAGKTTEGSTSHTKSGDTILSEVVDDSKTNTRHEDINPM----DRSKFKKVEM 122

Query: 124 PVFAGADPDLWLFRAERYFQIHKLTESEKITVSIISFDGAALDWYRSREDREPFTNWEDL 183
           PVF G +PD WLFRA+R+F+IH     EK+TV +ISFDG+ALDWYRS ++ E F NW+DL
Sbjct: 123 PVFNGTNPDPWLFRADRFFKIH-----EKLTVVVISFDGSALDWYRSNDELEAFKNWDDL 174

Query: 184 KQRLIIRFRQV 194
           KQR+++RFR +
Sbjct: 183 KQRILVRFRTI 174

[Close]
BLAST of Cucsa.119800 vs. NCBI nr
Match: gi|307136196|gb|ADN34034.1| (gypsy/ty3 element polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 67/191 (35.08%), Postives = 101/191 (52.88%), Query Frame = 1 

Query: 1   MAQKRIEEKLETVDQEISGIRAELHGLPSIKEDISLLAKSIERLGVQAEQQQQQQQTFMK 60
           M QK I+E L+  + EI  I+ E+  +P +++ +  +   +  +    E  Q+Q   F  
Sbjct: 1   MMQKLIKECLDASEAEIEAIKKEVQRIPVLEKTMEKMHAMLTEM---YEDCQRQPGGFEL 60

Query: 61  YIEGMTKGKTREEIPEGSSDKKETMIDVSDSFVMGGKSEEKHTKLEGEESVG-DQSKFKK 120
                 K K R E             D+ D        EE  T L  E   G D+ KFKK
Sbjct: 61  TRVSTGKRKIRTE-------------DLVDG------DEEGETSLSLEPGAGQDRIKFKK 120

Query: 121 IEMPVFAGADPDLWLFRAERYFQIHKLTESEKITVSIISFDGAALDWYRSREDREPFTNW 180
           +EMPVF G DPD W+++AE YFQ+H L E EK+ ++I+S +G  L W+R  E+R+ F +W
Sbjct: 121 LEMPVFNGEDPDGWIYKAEYYFQMHLLNEQEKLKIAIVSMEGKGLCWFRWAENRKRFRSW 169

Query: 181 EDLKQRLIIRF 191
           ++LK+R+  RF
Sbjct: 181 KELKERMYNRF 169

The following BLAST results are available for this feature:
BLAST of Cucsa.119800 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC35_CUCME1.1e-2035.08Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5B2I6_VITVI2.8e-1933.16Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1[more]
A5C0Y9_VITVI2.2e-1633.33Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012977 PE=4 SV=1[more]
E2DMZ5_BETVU1.9e-1531.38Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1[more]
E5GCI2_CUCME9.4e-1537.50Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cucsa.119800 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67020.16.2e-1024.70 unknown protein[more]
BLAST of Cucsa.119800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109397|ref|XP_008454696.1|3.1e-4347.98PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo][more]
gi|659119521|ref|XP_008459701.1|3.8e-4144.95PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo][more]
gi|659134102|ref|XP_008467029.1|1.1e-4046.35PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo][more]
gi|659118578|ref|XP_008459193.1|2.2e-3342.41PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo][more]
gi|307136196|gb|ADN34034.1|1.6e-2035.08gypsy/ty3 element polyprotein [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.119800.1Cucsa.119800.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 3..23
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.119800CSPI06G09760Wild cucumber (PI 183967)cgycpiB156
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.119800Cucurbita maxima (Rimu)cgycmaB0305
Cucsa.119800Cucurbita moschata (Rifu)cgycmoB0303
Cucsa.119800Cucumber (Chinese Long) v2cgycuB155
Cucsa.119800Melon (DHL92) v3.5.1cgymeB179
Cucsa.119800Watermelon (97103) v1cgywmB180
Cucsa.119800Cucurbita pepo (Zucchini)cgycpeB0304
Cucsa.119800Bottle gourd (USVL1VR-Ls)cgylsiB177
Cucsa.119800Melon (DHL92) v3.6.1cgymedB177
Cucsa.119800Silver-seed gourdcarcgyB0974
Cucsa.119800Cucumber (Chinese Long) v3cgycucB159
Cucsa.119800Watermelon (97103) v2cgywmbB178
Cucsa.119800Watermelon (97103) v2cgywmbB179
Cucsa.119800Wax gourdcgywgoB211