Cucsa.119680.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGTGGATGTAGCGATGGCTAAACTGCTTCCACTGCGTAAGCTTTCAAGGATACTGAAACTGCCGTCTTATTCTTCTTGCTCTTTCAGAAAGTTCCCTCATCTTCTTGAAGCTTCGAGTCCTCTCATCCATATCTTCAATAATGTTCATCAATTTCATCCTCCGTCTTTTTTACGAAGTTTCTGCTCCCGCCCTCTGGATATAGTCGGTGATGATTCTCGAGGCCCGGCCACCATTGATTACAGGTAATTTTTTCTTTTCCTTTCCTTTATTTTTCTGGGATTTTAATCTTATTTTAAGAGAAACTGTGTATTTGATGCGAAATCTTGTAGAAGTGAAAGTAGTAGGTACCAGCCCTTTCCCCCAAATTTTGTTTTAGCAATTTTGAAGCATTTGCTATTTGCTGATTGTTTTTTGGCTACGTGATTCGTGAATTCTTGTTTCCCTGTTTTTAATTGTTTTCTCTTATCTGATTTTAAACGAAACAAAAATTGCTTCGTGTTCCTTCAATAAAGTCTTGGATGTCTTGCCATCAGTTCAATTTTCTTTGAATGTAAACATTAAAAATGTAACTGATGGAGTTTTCCTTGTGCTCCAATGTAATAATAGAATGAATTTGATAGTGAGGAGGTCAAGTGATCTTGGCTAATGTTTGCTGCAGCTCTCTGATGCAGGAGGGAGAGTTTCACAGACTAGCTGATTTCGCAATACAGGGACTGCAAGAGAAATTAGAGGTAAATTTGTATCATGGAAGTTGGTTTCATATTATTAGCCAAAGGTAACTACTGCATAATTAGGAATTGCTGTTCAGATTCTGTGAACTTTATTTCTTTGCTTGCCAGGAATATGGTGATAATCTCCAAATTGATGGCTTTGACGTGGACTATGGGGTGAGAATGCCTAAGTAGTTCTAAAATTAGTTTAATTCATTTCATATTAATGGATGTTTAAATTTGTCCGATTTTCATTAAGCAGAATGAGGTACTGACCTTAAGGCTCGGCAATCTTGGCACTTATGTCTTGAACAAACAAACGCCAAACAGACAAATTTGGCTTTCTTCCCCTTTGAGGTATGAATTATGCTTCACGAATGATTAGAATCTACAATGTTTATCCTTTCCATTTGTTTCAAAGATCATTTCATACCTTCTGTCCATTTGATGACGAAGTCCAGCACTCATCTTTTTAACTTATATGAGCGTTAAAAGATTACTTGATCTTATTCTGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAAAAGTTCTTTTATATAATAAACACCCTCCACAAAGGATCAATCGTACAAAAATATCCCTTTTATATACTCCTTGTATTCTTTCATTGTTTATTTTTTCGTTATTTCATGATGGAAGTTCATATTCTTTTTTAGGGAAAAAAAAAAAAACCCAATCGTGACAACCTTAGTTATGTACTATCTTGCAGTGGTCCATCAAGGTTTGATTGGGATCAGAACTCTCAGACTTGGATTTATAGGCGGAACAAAGCAAACCTGTTGAGTCTTTTAGAAACTGAATTGACGCAGCTTTGTGGTGAGCCAATTGATCTTTCTTGAGTCATTTCAAATAACTGGGTCATGTTTGGTTGTTCTGAAGCATTTAGATGCGTATTTATGTTGCTCGTTCAGTTTGGTTCATGTTATTAACTATGGACCAGAGCCCTACTTTTCTTAATTTCGTTCTATCTGTTGCATGTTATATGAAATCACATGTTAAAAAATTCCCAGTGTTTCAACTATAACAATAATAATTAACCTACACTTAACTGAGCATGGCTCAATTACTCA GGTGGATGTAGCGATGGCTAAACTGCTTCCACTGCGTAAGCTTTCAAGGATACTGAAACTGCCGTCTTATTCTTCTTGCTCTTTCAGAAAGTTCCCTCATCTTCTTGAAGCTTCGAGTCCTCTCATCCATATCTTCAATAATGTTCATCAATTTCATCCTCCGTCTTTTTTACGAAGTTTCTGCTCCCGCCCTCTGGATATAGTCGGTGATGATTCTCGAGGCCCGGCCACCATTGATTACAGCTCTCTGATGCAGGAGGGAGAGTTTCACAGACTAGCTGATTTCGCAATACAGGGACTGCAAGAGAAATTAGAGGAATATGGTGATAATCTCCAAATTGATGGCTTTGACGTGGACTATGGGAATGAGGTACTGACCTTAAGGCTCGGCAATCTTGGCACTTATGTCTTGAACAAACAAACGCCAAACAGACAAATTTGGCTTTCTTCCCCTTTGAGTGGTCCATCAAGGTTTGATTGGGATCAGAACTCTCAGACTTGGATTTATAGGCGGAACAAAGCAAACCTGTTGAGTCTTTTAGAAACTGAATTGACGCAGCTTTGTGGTGAGCCAATTGATCTTTCTTGAGTCATTTCAAATAACTGGGTCATGTTTGGTTGTTCTGAAGCATTTAGATGCGTATTTATGTTGCTCGTTCAGTTTGGTTCATGTTATTAACTATGGACCAGAGCCCTACTTTTCTTAATTTCGTTCTATCTGTTGCATGTTATATGAAATCACATGTTAAAAAATTCCCAGTGTTTCAACTATAACAATAATAATTAACCTACACTTAACTGAGCATGGCTCAATTACTCA ATGGCTAAACTGCTTCCACTGCGTAAGCTTTCAAGGATACTGAAACTGCCGTCTTATTCTTCTTGCTCTTTCAGAAAGTTCCCTCATCTTCTTGAAGCTTCGAGTCCTCTCATCCATATCTTCAATAATGTTCATCAATTTCATCCTCCGTCTTTTTTACGAAGTTTCTGCTCCCGCCCTCTGGATATAGTCGGTGATGATTCTCGAGGCCCGGCCACCATTGATTACAGCTCTCTGATGCAGGAGGGAGAGTTTCACAGACTAGCTGATTTCGCAATACAGGGACTGCAAGAGAAATTAGAGGAATATGGTGATAATCTCCAAATTGATGGCTTTGACGTGGACTATGGGAATGAGGTACTGACCTTAAGGCTCGGCAATCTTGGCACTTATGTCTTGAACAAACAAACGCCAAACAGACAAATTTGGCTTTCTTCCCCTTTGAGTGGTCCATCAAGGTTTGATTGGGATCAGAACTCTCAGACTTGGATTTATAGGCGGAACAAAGCAAACCTGTTGAGTCTTTTAGAAACTGAATTGACGCAGCTTTGTGGTGAGCCAATTGATCTTTCTTGA MAKLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRPLDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETELTQLCGEPIDLS*
BLAST of Cucsa.119680.1 vs. Swiss-Prot
Match: FRDA_ARATH (Frataxin, mitochondrial OS=Arabidopsis thaliana GN=FH PE=1 SV=2) HSP 1 Score: 200.7 bits (509), Expect = 1.5e-50 Identity = 107/189 (56.61%), Postives = 131/189 (69.31%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. Swiss-Prot
Match: FRDA_MOUSE (Frataxin, mitochondrial OS=Mus musculus GN=Fxn PE=1 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 4.9e-22 Identity = 55/125 (44.00%), Postives = 78/125 (62.40%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. Swiss-Prot
Match: FRDA_BOVIN (Frataxin, mitochondrial OS=Bos taurus GN=FXN PE=2 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 3.2e-21 Identity = 54/125 (43.20%), Postives = 77/125 (61.60%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. Swiss-Prot
Match: FRDA_HUMAN (Frataxin, mitochondrial OS=Homo sapiens GN=FXN PE=1 SV=2) HSP 1 Score: 101.7 bits (252), Expect = 9.3e-21 Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. Swiss-Prot
Match: FRDA_SCHPO (Frataxin homolog, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.03c PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19 Identity = 48/140 (34.29%), Postives = 81/140 (57.86%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. TrEMBL
Match: A0A0A0KAC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G121430 PE=4 SV=1) HSP 1 Score: 392.9 bits (1008), Expect = 2.3e-106 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. TrEMBL
Match: D7SQR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0134g00410 PE=4 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 9.9e-62 Identity = 131/197 (66.50%), Postives = 153/197 (77.66%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. TrEMBL
Match: A5B4M3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004311 PE=4 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 3.8e-61 Identity = 131/202 (64.85%), Postives = 153/202 (75.74%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. TrEMBL
Match: W9R035_9ROSA (Frataxin OS=Morus notabilis GN=L484_022224 PE=4 SV=1) HSP 1 Score: 240.7 bits (613), Expect = 1.4e-60 Identity = 124/195 (63.59%), Postives = 149/195 (76.41%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. TrEMBL
Match: A0A140B496_PRUPE (Iron donor 24 OS=Prunus persica var. persica GN=FH PE=2 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 1.9e-60 Identity = 123/191 (64.40%), Postives = 150/191 (78.53%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. TAIR10
Match: AT4G03240.1 (AT4G03240.1 frataxin homolog) HSP 1 Score: 200.7 bits (509), Expect = 8.3e-52 Identity = 107/189 (56.61%), Postives = 131/189 (69.31%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. NCBI nr
Match: gi|449444405|ref|XP_004139965.1| (PREDICTED: frataxin, mitochondrial [Cucumis sativus]) HSP 1 Score: 392.9 bits (1008), Expect = 3.2e-106 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. NCBI nr
Match: gi|700191471|gb|KGN46675.1| (hypothetical protein Csa_6G121430 [Cucumis sativus]) HSP 1 Score: 392.9 bits (1008), Expect = 3.2e-106 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. NCBI nr
Match: gi|659094704|ref|XP_008448200.1| (PREDICTED: frataxin, mitochondrial [Cucumis melo]) HSP 1 Score: 357.1 bits (915), Expect = 2.0e-95 Identity = 175/189 (92.59%), Postives = 179/189 (94.71%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. NCBI nr
Match: gi|1009128006|ref|XP_015880995.1| (PREDICTED: frataxin, mitochondrial-like [Ziziphus jujuba]) HSP 1 Score: 245.4 bits (625), Expect = 8.3e-62 Identity = 127/197 (64.47%), Postives = 148/197 (75.13%), Query Frame = 1
BLAST of Cucsa.119680.1 vs. NCBI nr
Match: gi|225447713|ref|XP_002277091.1| (PREDICTED: frataxin, mitochondrial [Vitis vinifera]) HSP 1 Score: 244.6 bits (623), Expect = 1.4e-61 Identity = 131/197 (66.50%), Postives = 153/197 (77.66%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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