Cucsa.119680 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.119680
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Frataxin
Location	scaffold00998 : 1611499 .. 1613552 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGGATGTAGCGATGGCTAAACTGCTTCCACTGCGTAAGCTTTCAAGGATACTGAAACTGCCGTCTTATTCTTCTTGCTCTTTCAGAAAGTTCCCTCATCTTCTTGAAGCTTCGAGTCCTCTCATCCATATCTTCAATAATGTTCATCAATTTCATCCTCCGTCTTTTTTACGAAGTTTCTGCTCCCGCCCTCTGGATATAGTCGGTGATGATTCTCGAGGCCCGGCCACCATTGATTACAGGTAATTTTTTCTTTTCCTTTCCTTTATTTTTCTGGGATTTTAATCTTATTTTAAGAGAAACTGTGTATTTGATGCGAAATCTTGTAGAAGTGAAAGTAGTAGGTACCAGCCCTTTCCCCCAAATTTTGTTTTAGCAATTTTGAAGCATTTGCTATTTGCTGATTGTTTTTTGGCTACGTGATTCGTGAATTCTTGTTTCCCTGTTTTTAATTGTTTTCTCTTATCTGATTTTAAACGAAACAAAAATTGCTTCGTGTTCCTTCAATAAAGTCTTGGATGTCTTGCCATCAGTTCAATTTTCTTTGAATGTAAACATTAAAAATGTAACTGATGGAGTTTTCCTTGTGCTCCAATGTAATAATAGAATGAATTTGATAGTGAGGAGGTCAAGTGATCTTGGCTAATGTTTGCTGCAGCTCTCTGATGCAGGAGGGAGAGTTTCACAGACTAGCTGATTTCGCAATACAGGGACTGCAAGAGAAATTAGAGGTAAATTTGTATCATGGAAGTTGGTTTCATATTATTAGCCAAAGGTAACTACTGCATAATTAGGAATTGCTGTTCAGATTCTGTGAACTTTATTTCTTTGCTTGCCAGGAATATGGTGATAATCTCCAAATTGATGGCTTTGACGTGGACTATGGGGTGAGAATGCCTAAGTAGTTCTAAAATTAGTTTAATTCATTTCATATTAATGGATGTTTAAATTTGTCCGATTTTCATTAAGCAGAATGAGGTACTGACCTTAAGGCTCGGCAATCTTGGCACTTATGTCTTGAACAAACAAACGCCAAACAGACAAATTTGGCTTTCTTCCCCTTTGAGGTATGAATTATGCTTCACGAATGATTAGAATCTACAATGTTTATCCTTTCCATTTGTTTCAAAGATCATTTCATACCTTCTGTCCATTTGATGACGAAGTCCAGCACTCATCTTTTTAACTTATATGAGCGTTAAAAGATTACTTGATCTTATTCTGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAAAAGTTCTTTTATATAATAAACACCCTCCACAAAGGATCAATCGTACAAAAATATCCCTTTTATATACTCCTTGTATTCTTTCATTGTTTATTTTTTCGTTATTTCATGATGGAAGTTCATATTCTTTTTTAGGGAAAAAAAAAAAAACCCAATCGTGACAACCTTAGTTATGTACTATCTTGCAGTGGTCCATCAAGGTTTGATTGGGATCAGAACTCTCAGACTTGGATTTATAGGCGGAACAAAGCAAACCTGTTGAGTCTTTTAGAAACTGAATTGACGCAGCTTTGTGGTGAGCCAATTGATCTTTCTTGAGTCATTTCAAATAACTGGGTCATGTTTGGTTGTTCTGAAGCATTTAGATGCGTATTTATGTTGCTCGTTCAGTTTGGTTCATGTTATTAACTATGGACCAGAGCCCTACTTTTCTTAATTTCGTTCTATCTGTTGCATGTTATATGAAATCACATGTTAAAAAATTCCCAGTGTTTCAACTATAACAATAATAATTAACCTACACTTAACTGAGCATGGCTCAATTACTCA

mRNA sequence

GGTGGATGTAGCGATGGCTAAACTGCTTCCACTGCGTAAGCTTTCAAGGATACTGAAACTGCCGTCTTATTCTTCTTGCTCTTTCAGAAAGTTCCCTCATCTTCTTGAAGCTTCGAGTCCTCTCATCCATATCTTCAATAATGTTCATCAATTTCATCCTCCGTCTTTTTTACGAAGTTTCTGCTCCCGCCCTCTGGATATAGTCGGTGATGATTCTCGAGGCCCGGCCACCATTGATTACAGCTCTCTGATGCAGGAGGGAGAGTTTCACAGACTAGCTGATTTCGCAATACAGGGACTGCAAGAGAAATTAGAGGAATATGGTGATAATCTCCAAATTGATGGCTTTGACGTGGACTATGGGAATGAGGTACTGACCTTAAGGCTCGGCAATCTTGGCACTTATGTCTTGAACAAACAAACGCCAAACAGACAAATTTGGCTTTCTTCCCCTTTGAGTGGTCCATCAAGGTTTGATTGGGATCAGAACTCTCAGACTTGGATTTATAGGCGGAACAAAGCAAACCTGTTGAGTCTTTTAGAAACTGAATTGACGCAGCTTTGTGGTGAGCCAATTGATCTTTCTTGAGTCATTTCAAATAACTGGGTCATGTTTGGTTGTTCTGAAGCATTTAGATGCGTATTTATGTTGCTCGTTCAGTTTGGTTCATGTTATTAACTATGGACCAGAGCCCTACTTTTCTTAATTTCGTTCTATCTGTTGCATGTTATATGAAATCACATGTTAAAAAATTCCCAGTGTTTCAACTATAACAATAATAATTAACCTACACTTAACTGAGCATGGCTCAATTACTCA

Coding sequence (CDS)

ATGGCTAAACTGCTTCCACTGCGTAAGCTTTCAAGGATACTGAAACTGCCGTCTTATTCTTCTTGCTCTTTCAGAAAGTTCCCTCATCTTCTTGAAGCTTCGAGTCCTCTCATCCATATCTTCAATAATGTTCATCAATTTCATCCTCCGTCTTTTTTACGAAGTTTCTGCTCCCGCCCTCTGGATATAGTCGGTGATGATTCTCGAGGCCCGGCCACCATTGATTACAGCTCTCTGATGCAGGAGGGAGAGTTTCACAGACTAGCTGATTTCGCAATACAGGGACTGCAAGAGAAATTAGAGGAATATGGTGATAATCTCCAAATTGATGGCTTTGACGTGGACTATGGGAATGAGGTACTGACCTTAAGGCTCGGCAATCTTGGCACTTATGTCTTGAACAAACAAACGCCAAACAGACAAATTTGGCTTTCTTCCCCTTTGAGTGGTCCATCAAGGTTTGATTGGGATCAGAACTCTCAGACTTGGATTTATAGGCGGAACAAAGCAAACCTGTTGAGTCTTTTAGAAACTGAATTGACGCAGCTTTGTGGTGAGCCAATTGATCTTTCTTGA

Protein sequence

MAKLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRPLDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETELTQLCGEPIDLS*

Homology

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BLAST of Cucsa.119680 vs. Swiss-Prot
Match: FRDA_ARATH (Frataxin, mitochondrial OS=Arabidopsis thaliana GN=FH PE=1 SV=2)

HSP 1 Score: 200.7 bits (509), Expect = 1.5e-50
Identity = 107/189 (56.61%), Postives = 131/189 (69.31%), Query Frame = 1


Query: 7   LRKLSRILKLPS--YSSCSFRKFPHLLEASSPLIHIFNNVHQF--HPPSFLRSFCSRPLD 66
           LRKL R LKL      S   R   +L++ S   +  F  +     H     RSF      
Sbjct: 9   LRKLPRFLKLSPTLLRSNGVRVSSNLIQDSIEPLDSFWRIGSRIRHDSLTTRSF------ 68

Query: 67  IVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEVLT 126
                S+GPA++DYSS++QE EFH+LA+F I  L EK+E+YGDN+QIDGFD+DYGNEVLT
Sbjct: 69  ----SSQGPASVDYSSVLQEEEFHKLANFTINHLLEKIEDYGDNVQIDGFDIDYGNEVLT 128

Query: 127 LRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETELTQ 186
           L+LG+LGTYVLNKQTPNRQIW+SSP+SGPSRFDWD+++  WIYRR +A L  LLE EL  
Sbjct: 129 LKLGSLGTYVLNKQTPNRQIWMSSPVSGPSRFDWDRDANAWIYRRTEAKLHKLLEEELEN 187

Query: 187 LCGEPIDLS 192
           LCGEPI LS
Sbjct: 189 LCGEPIQLS 187

[Close]

BLAST of Cucsa.119680 vs. Swiss-Prot
Match: FRDA_MOUSE (Frataxin, mitochondrial OS=Mus musculus GN=Fxn PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.9e-22
Identity = 55/125 (44.00%), Postives = 78/125 (62.40%), Query Frame = 1


Query: 69  RGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDN-LQIDGFDVDYGNEVLTLRL-G 128
           R   T+D  S + E  + RLA+  +  L E  E+  D    ++ +DV +G+ VLT++L G
Sbjct: 76  RNLGTLDNPSSLDETAYERLAEETLDSLAEFFEDLADKPYTLEDYDVSFGDGVLTIKLGG 135

Query: 129 NLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETELTQLCGE 188
           +LGTYV+NKQTPN+QIWLSSP SGP R+DW    + W+Y  +  +L  LL  ELT+    
Sbjct: 136 DLGTYVINKQTPNKQIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLARELTKALNT 195

Query: 189 PIDLS 192
            +DLS
Sbjct: 196 KLDLS 198

[Close]

BLAST of Cucsa.119680 vs. Swiss-Prot
Match: FRDA_BOVIN (Frataxin, mitochondrial OS=Bos taurus GN=FXN PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.2e-21
Identity = 54/125 (43.20%), Postives = 77/125 (61.60%), Query Frame = 1


Query: 69  RGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDN-LQIDGFDVDYGNEVLTLRL-G 128
           R   T+  +  + +  + RLA+  +  L E  E+  D     + +DV +G+ VLT++L G
Sbjct: 80  RTAGTLGDAGTLDDTTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGG 139

Query: 129 NLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETELTQLCGE 188
           +LGTYV+NKQTPN+QIWLSSP SGP R+DW    + W+Y  +  +L  LL TELTQ    
Sbjct: 140 DLGTYVINKQTPNKQIWLSSPSSGPKRYDW--TGRNWVYSHDGVSLHELLATELTQALKT 199

Query: 189 PIDLS 192
            +DLS
Sbjct: 200 KLDLS 202

[Close]

BLAST of Cucsa.119680 vs. Swiss-Prot
Match: FRDA_HUMAN (Frataxin, mitochondrial OS=Homo sapiens GN=FXN PE=1 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 9.3e-21
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 1


Query: 69  RGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDN-LQIDGFDVDYGNEVLTLRL-G 128
           R   T+ +   + E  + RLA+  +  L E  E+  D     + +DV +G+ VLT++L G
Sbjct: 79  RKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGG 138

Query: 129 NLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETELTQLCGE 188
           +LGTYV+NKQTPN+QIWLSSP SGP R+DW    + W+Y  +  +L  LL  ELT+    
Sbjct: 139 DLGTYVINKQTPNKQIWLSSPSSGPKRYDW--TGKNWVYSHDGVSLHELLAAELTKALKT 198

Query: 189 PIDLS 192
            +DLS
Sbjct: 199 KLDLS 201

[Close]

BLAST of Cucsa.119680 vs. Swiss-Prot
Match: FRDA_SCHPO (Frataxin homolog, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.03c PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 48/140 (34.29%), Postives = 81/140 (57.86%), Query Frame = 1


Query: 50  PSFLRSFCSRPLDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQI 109
           P FL+ +     ++ G   R  + + ++  + + E+HR+AD  +  L +  E+  + +  
Sbjct: 13  PIFLKPY-EFSTNVFGLRCRYYSQVRHNGALTDLEYHRVADDTLDVLNDTFEDLLEEVGK 72

Query: 110 DGFDVDYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNK 169
             +D+ Y N V+TL LG  GTYV+NKQ P  QIWLSSP+SGP  +++   S+TW   R++
Sbjct: 73  KDYDIQYANGVITLMLGEKGTYVINKQPPAHQIWLSSPVSGPKHYEYSLKSKTWCSTRDE 132

Query: 170 ANLLSLLETELTQLCGEPID 190
             LL +L +E ++    PI+
Sbjct: 133 GTLLGILSSEFSKWFSRPIE 151

[Close]

BLAST of Cucsa.119680 vs. TrEMBL
Match: A0A0A0KAC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G121430 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 2.3e-106
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1


Query: 1   MAKLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRP 60
           MAKLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRP
Sbjct: 33  MAKLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRP 92

Query: 61  LDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEV 120
           LDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEV
Sbjct: 93  LDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEV 152

Query: 121 LTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETEL 180
           LTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETEL
Sbjct: 153 LTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETEL 212

Query: 181 TQLCGEPIDLS 192
           TQLCGEPIDLS
Sbjct: 213 TQLCGEPIDLS 223

[Close]

BLAST of Cucsa.119680 vs. TrEMBL
Match: D7SQR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0134g00410 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 9.9e-62
Identity = 131/197 (66.50%), Postives = 153/197 (77.66%), Query Frame = 1


Query: 2   AKLLPLRKLSRILKLPSYSSCS---FRKFPHLLEASSPLIHIFNNVHQFHPPSFL----R 61
           +KLL LR+LSR LKL S SS S    R +  LLEAS P     +++ + +  SFL    R
Sbjct: 7   SKLLFLRRLSRALKLSSSSSSSSLSVRPYVFLLEASRP-----SDLAKINLRSFLSVASR 66

Query: 62  SFCSRPLDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDV 121
           SFCSR LD+  DDS+GPA IDYSSL+QE EFH++AD  IQ LQEK EEYGD +QIDGFD+
Sbjct: 67  SFCSRTLDLE-DDSQGPAAIDYSSLLQEDEFHKVADSTIQDLQEKFEEYGDCVQIDGFDI 126

Query: 122 DYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLS 181
           DYGN+VLTL+LG LGTYVLNKQTPNRQIWLSSP+SGPSRFDWDQ++Q W+YRR KANL  
Sbjct: 127 DYGNQVLTLKLGTLGTYVLNKQTPNRQIWLSSPVSGPSRFDWDQSAQAWVYRRTKANLSK 186

Query: 182 LLETELTQLCGEPIDLS 192
           LLETEL +LCG PI LS
Sbjct: 187 LLETELEKLCGTPISLS 197

[Close]

BLAST of Cucsa.119680 vs. TrEMBL
Match: A5B4M3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004311 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.8e-61
Identity = 131/202 (64.85%), Postives = 153/202 (75.74%), Query Frame = 1


Query: 2   AKLLPLRKLSRILKLPSYSSCS--------FRKFPHLLEASSPLIHIFNNVHQFHPPSFL 61
           +KLL LR+LSR LKL S SS S         R +  LLEAS P     +++ + +  SFL
Sbjct: 7   SKLLFLRRLSRALKLSSSSSSSSSSSSSLSVRPYVFLLEASRP-----SDLAKINLRSFL 66

Query: 62  ----RSFCSRPLDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQI 121
               RSFCSR LD+  DDS+GPA IDYSSL+QE EFH++AD  IQ LQEK EEYGD +QI
Sbjct: 67  SVASRSFCSRTLDLE-DDSQGPAAIDYSSLLQEDEFHKVADSTIQDLQEKFEEYGDCVQI 126

Query: 122 DGFDVDYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNK 181
           DGFD+DYGN+VLTL+LG LGTYVLNKQTPNRQIWLSSP+SGPSRFDWDQ++Q W+YRR K
Sbjct: 127 DGFDIDYGNQVLTLKLGTLGTYVLNKQTPNRQIWLSSPVSGPSRFDWDQSAQAWVYRRTK 186

Query: 182 ANLLSLLETELTQLCGEPIDLS 192
           ANL  LLETEL +LCG PI LS
Sbjct: 187 ANLSKLLETELEKLCGTPISLS 202

[Close]

BLAST of Cucsa.119680 vs. TrEMBL
Match: W9R035_9ROSA (Frataxin OS=Morus notabilis GN=L484_022224 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.4e-60
Identity = 124/195 (63.59%), Postives = 149/195 (76.41%), Query Frame = 1


Query: 2   AKLLPLRKLSRILKLP---SYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFL--RSF 61
           +KLLPLR+L R+ KLP   S+SS S+  +  LL   +      ++V    P   +  RSF
Sbjct: 3   SKLLPLRRLWRLSKLPPPSSFSSSSYGSYSSLLVLDASRDLCISDVAAQRPCYSVASRSF 62

Query: 62  CSRPLDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDY 121
           CSRPL++  + S+GPA IDY SL+QEGEFHRLAD  I  LQEK EEYGD +Q+DGFD+DY
Sbjct: 63  CSRPLNL-DESSQGPAAIDYRSLLQEGEFHRLADSTIHDLQEKFEEYGDLVQVDGFDIDY 122

Query: 122 GNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLL 181
           GNEVLTL+LG LGTYVLNKQTPNRQIWLSSP+SGP RFDWD ++Q WIYRRNKANLL LL
Sbjct: 123 GNEVLTLKLGELGTYVLNKQTPNRQIWLSSPVSGPYRFDWDPSAQAWIYRRNKANLLKLL 182

Query: 182 ETELTQLCGEPIDLS 192
           E E+ QLCGEP++LS
Sbjct: 183 EREMKQLCGEPLNLS 196

[Close]

BLAST of Cucsa.119680 vs. TrEMBL
Match: A0A140B496_PRUPE (Iron donor 24 OS=Prunus persica var. persica GN=FH PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.9e-60
Identity = 123/191 (64.40%), Postives = 150/191 (78.53%), Query Frame = 1


Query: 2   AKLLPLRKLSRILK-LPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRP 61
           +KLLPLR+LSR+LK L S SS SFR   +LL AS  L H+  N H        RSFCS P
Sbjct: 3   SKLLPLRRLSRLLKPLCSASSSSFRSSLYLLAASKSL-HLSENSHGPRYWIDSRSFCSSP 62

Query: 62  LDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEV 121
           L++  +D+  PA IDY S++QE EFH+LAD  I  LQEK EEYGD++Q+DGFD+DYGNEV
Sbjct: 63  LNL--NDAEVPAAIDYRSVLQEDEFHKLADTTIHDLQEKFEEYGDSVQVDGFDIDYGNEV 122

Query: 122 LTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETEL 181
           LTL+LG+LGTYVLNKQTPNRQ+WLSSP+SGP RFDWD+N+Q W+YRR KA+LL LLE+E+
Sbjct: 123 LTLKLGDLGTYVLNKQTPNRQLWLSSPVSGPFRFDWDRNAQAWVYRRTKAHLLKLLESEM 182

Query: 182 TQLCGEPIDLS 192
            +LCGEPI LS
Sbjct: 183 EELCGEPISLS 190

[Close]

BLAST of Cucsa.119680 vs. TAIR10
Match: AT4G03240.1 (AT4G03240.1 frataxin homolog)

HSP 1 Score: 200.7 bits (509), Expect = 8.3e-52
Identity = 107/189 (56.61%), Postives = 131/189 (69.31%), Query Frame = 1


Query: 7   LRKLSRILKLPS--YSSCSFRKFPHLLEASSPLIHIFNNVHQF--HPPSFLRSFCSRPLD 66
           LRKL R LKL      S   R   +L++ S   +  F  +     H     RSF      
Sbjct: 9   LRKLPRFLKLSPTLLRSNGVRVSSNLIQDSIEPLDSFWRIGSRIRHDSLTTRSF------ 68

Query: 67  IVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEVLT 126
                S+GPA++DYSS++QE EFH+LA+F I  L EK+E+YGDN+QIDGFD+DYGNEVLT
Sbjct: 69  ----SSQGPASVDYSSVLQEEEFHKLANFTINHLLEKIEDYGDNVQIDGFDIDYGNEVLT 128

Query: 127 LRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETELTQ 186
           L+LG+LGTYVLNKQTPNRQIW+SSP+SGPSRFDWD+++  WIYRR +A L  LLE EL  
Sbjct: 129 LKLGSLGTYVLNKQTPNRQIWMSSPVSGPSRFDWDRDANAWIYRRTEAKLHKLLEEELEN 187

Query: 187 LCGEPIDLS 192
           LCGEPI LS
Sbjct: 189 LCGEPIQLS 187

[Close]

BLAST of Cucsa.119680 vs. NCBI nr
Match: gi|449444405|ref|XP_004139965.1| (PREDICTED: frataxin, mitochondrial [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 3.2e-106
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1


Query: 1   MAKLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRP 60
           MAKLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRP
Sbjct: 1   MAKLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRP 60

Query: 61  LDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEV 120
           LDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEV
Sbjct: 61  LDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEV 120

Query: 121 LTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETEL 180
           LTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETEL
Sbjct: 121 LTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETEL 180

Query: 181 TQLCGEPIDLS 192
           TQLCGEPIDLS
Sbjct: 181 TQLCGEPIDLS 191

[Close]

BLAST of Cucsa.119680 vs. NCBI nr
Match: gi|700191471|gb|KGN46675.1| (hypothetical protein Csa_6G121430 [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 3.2e-106
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1


Query: 1   MAKLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRP 60
           MAKLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRP
Sbjct: 33  MAKLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRP 92

Query: 61  LDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEV 120
           LDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEV
Sbjct: 93  LDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEV 152

Query: 121 LTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETEL 180
           LTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETEL
Sbjct: 153 LTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETEL 212

Query: 181 TQLCGEPIDLS 192
           TQLCGEPIDLS
Sbjct: 213 TQLCGEPIDLS 223

[Close]

BLAST of Cucsa.119680 vs. NCBI nr
Match: gi|659094704|ref|XP_008448200.1| (PREDICTED: frataxin, mitochondrial [Cucumis melo])

HSP 1 Score: 357.1 bits (915), Expect = 2.0e-95
Identity = 175/189 (92.59%), Postives = 179/189 (94.71%), Query Frame = 1


Query: 3   KLLPLRKLSRILKLPSYSSCSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLRSFCSRPLD 62
           KLLPL KLSRILKLPS SSCSFRK P+LLEAS PLIHI NNVHQF PPSF +SFCSRPLD
Sbjct: 21  KLLPLHKLSRILKLPSSSSCSFRKCPYLLEASIPLIHISNNVHQFQPPSFSQSFCSRPLD 80

Query: 63  IVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDVDYGNEVLT 122
           IVGDDSRGPATIDYSSLMQEGEFHRLADF IQGLQEKLEEYGDNLQIDGFDVDYGNEVLT
Sbjct: 81  IVGDDSRGPATIDYSSLMQEGEFHRLADFTIQGLQEKLEEYGDNLQIDGFDVDYGNEVLT 140

Query: 123 LRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLSLLETELTQ 182
           LRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNS+ WIYRRNKANLLSLLETEL Q
Sbjct: 141 LRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSRAWIYRRNKANLLSLLETELMQ 200

Query: 183 LCGEPIDLS 192
           LCGEPI+LS
Sbjct: 201 LCGEPINLS 209

[Close]

BLAST of Cucsa.119680 vs. NCBI nr
Match: gi|1009128006|ref|XP_015880995.1| (PREDICTED: frataxin, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 245.4 bits (625), Expect = 8.3e-62
Identity = 127/197 (64.47%), Postives = 148/197 (75.13%), Query Frame = 1


Query: 2   AKLLPLRKLSRILKLPSYSS-------CSFRKFPHLLEASSPLIHIFNNVHQFHPPSFLR 61
           +KLL LR+L R+LKLP  SS       CS          +S    I  N+H+       R
Sbjct: 3   SKLLQLRRLRRLLKLPPSSSSPSHPSYCSNYMSLSCFPQASRCFDISVNMHRPCYSVASR 62

Query: 62  SFCSRPLDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDV 121
           SFCSRPL++ G+ S+GPA IDY SL+QE EFH+LAD  I  LQEKLEEYGDN+Q DGFD+
Sbjct: 63  SFCSRPLNLDGE-SQGPAAIDYRSLLQEDEFHKLADSTIHDLQEKLEEYGDNVQADGFDI 122

Query: 122 DYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLS 181
           DYGNEVLTL+LGNLGTYVLNKQTPNRQ+WLSSP+SGPSRFDWD+N+Q W+YRRNKANLL 
Sbjct: 123 DYGNEVLTLKLGNLGTYVLNKQTPNRQLWLSSPVSGPSRFDWDRNAQAWVYRRNKANLLK 182

Query: 182 LLETELTQLCGEPIDLS 192
            LE+EL QLCGEPI LS
Sbjct: 183 TLESELEQLCGEPIKLS 198

[Close]

BLAST of Cucsa.119680 vs. NCBI nr
Match: gi|225447713|ref|XP_002277091.1| (PREDICTED: frataxin, mitochondrial [Vitis vinifera])

HSP 1 Score: 244.6 bits (623), Expect = 1.4e-61
Identity = 131/197 (66.50%), Postives = 153/197 (77.66%), Query Frame = 1


Query: 2   AKLLPLRKLSRILKLPSYSSCS---FRKFPHLLEASSPLIHIFNNVHQFHPPSFL----R 61
           +KLL LR+LSR LKL S SS S    R +  LLEAS P     +++ + +  SFL    R
Sbjct: 7   SKLLFLRRLSRALKLSSSSSSSSLSVRPYVFLLEASRP-----SDLAKINLRSFLSVASR 66

Query: 62  SFCSRPLDIVGDDSRGPATIDYSSLMQEGEFHRLADFAIQGLQEKLEEYGDNLQIDGFDV 121
           SFCSR LD+  DDS+GPA IDYSSL+QE EFH++AD  IQ LQEK EEYGD +QIDGFD+
Sbjct: 67  SFCSRTLDLE-DDSQGPAAIDYSSLLQEDEFHKVADSTIQDLQEKFEEYGDCVQIDGFDI 126

Query: 122 DYGNEVLTLRLGNLGTYVLNKQTPNRQIWLSSPLSGPSRFDWDQNSQTWIYRRNKANLLS 181
           DYGN+VLTL+LG LGTYVLNKQTPNRQIWLSSP+SGPSRFDWDQ++Q W+YRR KANL  
Sbjct: 127 DYGNQVLTLKLGTLGTYVLNKQTPNRQIWLSSPVSGPSRFDWDQSAQAWVYRRTKANLSK 186

Query: 182 LLETELTQLCGEPIDLS 192
           LLETEL +LCG PI LS
Sbjct: 187 LLETELEKLCGTPISLS 197

The following BLAST results are available for this feature:

BLAST of Cucsa.119680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FRDA_ARATH	1.5e-50	56.61	Frataxin, mitochondrial OS=Arabidopsis thaliana GN=FH PE=1 SV=2	[more]
FRDA_MOUSE	4.9e-22	44.00	Frataxin, mitochondrial OS=Mus musculus GN=Fxn PE=1 SV=1	[more]
FRDA_BOVIN	3.2e-21	43.20	Frataxin, mitochondrial OS=Bos taurus GN=FXN PE=2 SV=1	[more]
FRDA_HUMAN	9.3e-21	42.40	Frataxin, mitochondrial OS=Homo sapiens GN=FXN PE=1 SV=2	[more]
FRDA_SCHPO	1.3e-19	34.29	Frataxin homolog, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]

BLAST of Cucsa.119680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAC6_CUCSA	2.3e-106	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G121430 PE=4 SV=1	[more]
D7SQR3_VITVI	9.9e-62	66.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0134g00410 PE=4 SV=...	[more]
A5B4M3_VITVI	3.8e-61	64.85	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004311 PE=4 SV=1	[more]
W9R035_9ROSA	1.4e-60	63.59	Frataxin OS=Morus notabilis GN=L484_022224 PE=4 SV=1	[more]
A0A140B496_PRUPE	1.9e-60	64.40	Iron donor 24 OS=Prunus persica var. persica GN=FH PE=2 SV=1	[more]

BLAST of Cucsa.119680 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03240.1	8.3e-52	56.61	frataxin homolog	[more]

BLAST of Cucsa.119680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444405\|ref\|XP_004139965.1\|	3.2e-106	100.00	PREDICTED: frataxin, mitochondrial [Cucumis sativus]	[more]
gi\|700191471\|gb\|KGN46675.1\|	3.2e-106	100.00	hypothetical protein Csa_6G121430 [Cucumis sativus]	[more]
gi\|659094704\|ref\|XP_008448200.1\|	2.0e-95	92.59	PREDICTED: frataxin, mitochondrial [Cucumis melo]	[more]
gi\|1009128006\|ref\|XP_015880995.1\|	8.3e-62	64.47	PREDICTED: frataxin, mitochondrial-like [Ziziphus jujuba]	[more]
gi\|225447713\|ref\|XP_002277091.1\|	1.4e-61	66.50	PREDICTED: frataxin, mitochondrial [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002908	Frataxin/CyaY
IPR017789	Frataxin
IPR020895	Frataxin_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0008199	ferric iron binding
GO:0004322	ferroxidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0016226	iron-sulfur cluster assembly
GO:0055114	oxidation-reduction process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0051301	cell division
biological_process	GO:0015994	chlorophyll metabolic process
biological_process	GO:0048825	cotyledon development
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0008199	ferric iron binding
molecular_function	GO:0004322	ferroxidase activity
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.119680.1	Cucsa.119680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002908	Frataxin/CyaY	PRINTS	PR00904	FRATAXIN	coord: 80..98 score: 2.8E-8coord: 118..133 score: 2.8E-8coord: 133..148 score: 2.
IPR002908	Frataxin/CyaY	GENE3D	G3DSA:3.30.920.10		coord: 76..190 score: 1.1
IPR002908	Frataxin/CyaY	PANTHER	PTHR16821	FRATAXIN	coord: 61..191 score: 1.7
IPR002908	Frataxin/CyaY	PFAM	PF01491	Frataxin_Cyay	coord: 80..187 score: 7.2
IPR002908	Frataxin/CyaY	SMART	SM01219	Frataxin_Cyay_2	coord: 80..191 score: 5.2
IPR002908	Frataxin/CyaY	TIGRFAMs	TIGR03421	TIGR03421	coord: 82..189 score: 8.5
IPR002908	Frataxin/CyaY	PROFILE	PS50810	FRATAXIN_2	coord: 80..188 score: 29
IPR002908	Frataxin/CyaY	unknown	SSF55387	Frataxin/Nqo15-like	coord: 71..188 score: 1.24
IPR017789	Frataxin	TIGRFAMs	TIGR03422	TIGR03422	coord: 84..181 score: 5.5
IPR020895	Frataxin conserved site	PROSITE	PS01344	FRATAXIN_1	coord: 132..146 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.119680	Csa6G121430	Cucumber (Chinese Long) v2	cgycuB155
Cucsa.119680	MELO3C013522	Melon (DHL92) v3.5.1	cgymeB179
Cucsa.119680	CSPI06G09840	Wild cucumber (PI 183967)	cgycpiB156
Cucsa.119680	CmaCh02G001360	Cucurbita maxima (Rimu)	cgycmaB0307
Cucsa.119680	CmoCh02G001370	Cucurbita moschata (Rifu)	cgycmoB0304
Cucsa.119680	CmoCh20G005950	Cucurbita moschata (Rifu)	cgycmoB0298
Cucsa.119680	Lsi10G008520	Bottle gourd (USVL1VR-Ls)	cgylsiB177
Cucsa.119680	Cp4.1LG05g14820	Cucurbita pepo (Zucchini)	cgycpeB0305
Cucsa.119680	CsaV3_6G012280	Cucumber (Chinese Long) v3	cgycucB159
Cucsa.119680	Carg13555	Silver-seed gourd	carcgyB0032

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.119680	Watermelon (97103) v2	cgywmbB179
Cucsa.119680	Wax gourd	cgywgoB211
Cucsa.119680	Wax gourd	cgywgoB215
Cucsa.119680	Melon (DHL92) v3.5.1	cgymeB178
Cucsa.119680	Cucurbita pepo (Zucchini)	cgycpeB0292
Cucsa.119680	Melon (DHL92) v3.6.1	cgymedB176
Cucsa.119680	Melon (DHL92) v3.6.1	cgymedB177
Cucsa.119680	Silver-seed gourd	carcgyB0392