Cucsa.065490.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATAAATTAACTGCTTGAAGTTATGTCAAGAATAGGTTTGGAGAACTTTCAGGACGCTTAGGTTTGTTACTGCTAGTGTATTTCCCCTTTGGGCTCTGATTTTTATTTTTGCTACGTTACTTGTGCCTGAAGCAAATACTTATTGAAACAGAATTGTCTAAAATGAGCTGGAACTCAAACATCGAGGTTCATTGCATGAATAACGGTTATCCTTATAGTACTGCTTCTTTTATGGAATACTTTGAAGGTCTTACGTATGATCATGTGAATTTCATTTTTtCGGGTGCCTCACATTCTCAGGTACTATAAATCTTTTTtATTTTAGATGCTCTCCATGAATGTCTTGTCTGGAAGCTGGACTTATAGAACTTGTGGCATTTAAATGCTGCTTTATCTTTACCTTATAGACTTGATTCTCTGTTCTGTAGATTTTTTGACAATTGTCTCAAGTAAAAAaGGGGAAATCATGTGACATTTCATCTTCTAACTACTTTTGGCTTCTCAACTATGGCCTTTTCATTTTGCTTTAACTTCCTGATGCATGCTTGATTTGACATTTATTCTCAAGATCAAAGGGTCTTTATATCTGATTTTCATGATTCCAAATTAATAAACTTATTTTCCCGACATGGAAGTATAATATTTTAATTTCATTCAGGAGACTGTTTGTTCATCAACTAACTCAAGTTACAAGTTTGGGCATTCTGATTTATGGAGCGCATCATACTTTGATGCTCAATCGTTTGAGATTCAAGATCATGAATCCACTATTGATGAACACAGGAGGCCGCTCTTGACAGTCCAGAATGAACAGAGTTCAGGAAATAGCGTGTGGGAAGAAAATGCCAATCCTAATATGTCCGGTAACAGCATGGAATGTAAGGGTTAATGCCTGTTTTGTTTCAAGCTTTTGAATGAACACTATAGTATGATTGTTTGTTAAACAGAAGTTTTCAAATAGTATGATTGTTTGTTAAACAGAAGTTGTCAAGTTAAGGTAATGGAACAAACATTCAGATATTGAATGTTACGGTTCTATAAAATCACACGCTGCAAAGAAGAGATACTTATTGACTCTTTATTTAGATTATTTTTCTCAGTTCATGAATGGAGGCATTTGTAAGAGAAAGCAGTTGATGTCATCCATTTCTGGTCAATCGACAAACTTCATTTTTAGGCTGTTTATTATTTCTCTCAGTTCATAAATGATAGTGCAATATGGTTCTGAGGGTTTTCTTATGCTACATGTAGAAAAATTGGCTTGTGCCATATTAGTCATGTTGTAAGATGGGTAACTTATTCAATGCACGAAATCAAATTTAGGGTGACTTAACGAGTATCTTGTAGATGAGATACAATCTTTCTCAGTTCATAAACGATAATGTAAAATATGTTCATTTGTTTTCTTATGCTACACATAGGAAAATGGCTTTAGACGTAGTAGTCATGCTGTAAAGTGGGAAGCTTATTTGATGCAACAATTGAATTTGGGGTGATTTAATGAGTATCCTGTAAATGAGATACAATCGCACCATCCATTTATACACATATCTTCTATCATATTTCAACGTTAACTTGTAATTACTTGGTGCATCTCATTTTACCAAGTACTGTTCTGTTGTAGTATTAACTATCCTGCTAGGTATAGTACCAAAGATATGCACAAAATCTAACAGCAAAATCATAATACAGAAAAATCCTATTTTATATCATTTTATTACTCATGATTGTTTGCTCCTTTTCTTCTTTCTGATTCAATTATAATGTTTATGGAAATTTAAATACCAGTTCCTAAACTCCGTTTTTCTTTATTACTTTTTCAGGCCCTCGGAGGCATTCAAATTATCATGAGTATCAGGTCTGCAGCTTATCGATTCATAAACATGTTATGCCACTAAGTTTCAGTTGTAGTGTTAAGGTTGTTTTCGGTGGAGTACATTTTTGGTTAGTGTCCTGTATTCTGTGGTTCATGCTGGCAACCAGTCACATACTTGTGTTAATACATAAAATAAAATTATTCCTGTAAGATATAAAACTGGCTTATCTGAAATCACAGAATAAAGGAAAAGATAGAGGATATTAGAATACAAATTCATTTCTAATCCAGTGGTGACAAACTTGGTGGCGGTTCAACTCCCTTAACATCTATTATTCCAGATTTTCTATTCCGCGCCAAATAGACCTGGAATTTACAGTTCCAATGCTTCAGAAGACAACTATAAATGCATGATTCCTAATCTGTTCCATCTTGAAATGTGCAGACTATTTGGCAAGAGATTGTTGATCCTGATAACATGACTTATGAGGTTAGAGCAGCTGATTTTCTTTCCTATTTACTTTTGTATATTACTGAACAAAATGTTTTCTCCTGTAACTTTATATGTTCTTATTGAAGCTATATTTACTTCAATGGCTATTTATTATGATGGATATTGCTAATTGAAATGTTATATTACGGCCAGTCAGTAAGAAGTCTTGCTGCTGTGTAGCAAAACCAGTAGCCATTACAGCTAATAGGCTAGGTGTTGGACGCTTTCTTGCTAAGGTAGAAAGGATAGAAATGATGGCAGAAGTTAACCTAATTGTTTATTCTGCGTTTTGGTTGTTGGTACACTTCGACGTAATTTTCTATCCTTGAACTTGGTTTCTTGGAGGGCCTTACATATATACCAAAGAAAGCTTGCTTCTTTGGAGCGCTCTGCCTGTTGACGCTGCTTTTTAAGAAGCTAAAATTGATTAGATAGGAGCATAGCTGCATAAGTAATCAGCTGTAAATCCACTCAATACATTCTGAAATCAAGTTCCATGTTTAATAAACGTAAAATTTGTCTGGCTAACTGTTATATGTAAAGTCAACTATATGCCTCCTGAATTATGTCGATTACTCTCTTCAATAAAGTGACGGTTTAAAGAAACTTATTTCAGGAATTAGTAGATTTAGGTGAGACAGTAGGAACTCAAAGTAGAGGCCTTACACAAGAACTAATTGCATTGCTTCCAGTATCGAGGTACAGATGGGGATTTTtCTCAAGGAAGAAATCACGAAATGAAAGGTAACACTAGATTGATTGATCATCTTATCTCGAAATATTTTAAACTTTGTATTATTTTtCGGTTGTTTTTtAGAATTGTTCCAGCTATCAAGATGTAGTAATTCTCACCAATGCCCTTATACTTAGTAACGCCTATAACAAGTGGGGTATCGGGGGGTTTGATAAGCAACACATAATAATTATTGCCAAGCTATGTTTATTTTGACTTGTGTACCTCATATTTTCATTTTCATTATTATTGTTAAGAACAATATACAGTTACGATGAATGATCTTTCTCAATATTATCTCATTTACTCAAAATCATCTCAATAAAGAGAGAAAACAAGTGGTTTGGCCGACTAGCCTGCCTGCTACTTGCAACGCCACCCTTTATTCAATGGGGAAGAAGGAAAACGATCAATAGATTCAAATTGGTGCACAAGCCTTCCTCATTAACTTTTTTGAGGAATTACCGATTGACAATGATATATTTCTTGCATTAATTTTTTTAACATTATATATATGAAGACACATCTTGATTTGTATACAGGTGTGTGATATGCCAAATGGAATACAAACGTGGGGATAAAATAATTACTCTACCATGCAAACACAAGTACCATACAAGTTGCGGGACCAAGTGGCTTAGTATCAAGAAGGTGACTTTCTGATATCTTTTATCCCTCTTTTAGTAAAACATACAATCAGCAATTTTACTCAATATTGCATAATCTCTCTCCTCCAGGCATGTCCCATTTGCTACACTGAGGTTTTTGGTGACACTTCAAAACGATAAAGAAAAGAAGGAAAaGAAAAAAAaGGCTTTGATTAATTGTCATGAGAAAGGGAACCCTTAAAAAGGTTTGGAGTATACTTATTTCGTTTCCTTTCTCATTTACAACTTTACACAATCGTCGTTTGATGTTAAAGATTAGGAAAAATCTTTGATTTCAATACAGAGGATGATAGAGCCAGATAGTAGAATTTGATTGAAATCAATTTGTTTGTTTGTTTGTTTGGTTTTGTTTTTGTTATTTTTTCAACTTGGCTCATATTGAACCACGACGACTTGGTTTTTGGCTCTACCGATTATAAATATTTCTTATTAGTTGGAGCCTGGAGGGGGC AATAAATTAACTGCTTGAAGTTATGTCAAGAATAGGTTTGGAGAACTTTCAGGACGCTTAGGAGACTGTTTGTTCATCAACTAACTCAAGTTACAAGTTTGGGCATTCTGATTTATGGAGCGCATCATACTTTGATGCTCAATCGTTTGAGATTCAAGATCATGAATCCACTATTGATGAACACAGGAGGCCGCTCTTGACAGTCCAGAATGAACAGAGTTCAGGAAATAGCGTGTGGGAAGAAAATGCCAATCCTAATATGTCCGGTAACAGCATGGAATGCCCTCGGAGGCATTCAAATTATCATGAGTATCAGACTATTTGGCAAGAGATTGTTGATCCTGATAACATGACTTATGAGGAATTAGTAGATTTAGGTGAGACAGTAGGAACTCAAAGTAGAGGCCTTACACAAGAACTAATTGCATTGCTTCCAGTATCGAGGTACAGATGGGGATTTTTCTCAAGGAAGAAATCACGAAATGAAAGGTGTGTGATATGCCAAATGGAATACAAACGTGGGGATAAAATAATTACTCTACCATGCAAACACAAGTACCATACAAGTTGCGGGACCAAGTGGCTTAGTATCAAGAAGGCATGTCCCATTTGCTACACTGAGGTTTTTGGTGACACTTCAAAACGATAAAGAAAAGAAGGAAAAGAAAAAAAAGGCTTTGATTAATTGTCATGAGAAAGGGAACCCTTAAAAAGGTTTGGAGTATACTTATTTCGTTTCCTTTCTCATTTACAACTTTACACAATCGTCGTTTGATGTTAAAGATTAGGAAAAATCTTTGATTTCAATACAGAGGATGATAGAGCCAGATAGTAGAATTTGATTGAAATCAAtttgtttgtttgtttgtttgGTTTTGTTTTTGTTATTTTTTCAACTTGGCTCATATTGAACCACGACGACTTGGTTTTTGGCTCTACCGATTATAAATATTTCTTATTAGTTGGAGCCTGGAGGGGGC ATGTCCGGTAACAGCATGGAATGCCCTCGGAGGCATTCAAATTATCATGAGTATCAGACTATTTGGCAAGAGATTGTTGATCCTGATAACATGACTTATGAGGAATTAGTAGATTTAGGTGAGACAGTAGGAACTCAAAGTAGAGGCCTTACACAAGAACTAATTGCATTGCTTCCAGTATCGAGGTACAGATGGGGATTTTtCTCAAGGAAGAAATCACGAAATGAAAGGTGTGTGATATGCCAAATGGAATACAAACGTGGGGATAAAATAATTACTCTACCATGCAAACACAAGTACCATACAAGTTGCGGGACCAAGTGGCTTAGTATCAAGAAGGCATGTCCCATTTGCTACACTGAGGTTTTTGGTGACACTTCAAAACGATAA MSGNSMECPRRHSNYHEYQTIWQEIVDPDNMTYEELVDLGETVGTQSRGLTQELIALLPVSRYRWGFFSRKKSRNERCVICQMEYKRGDKIITLPCKHKYHTSCGTKWLSIKKACPICYTEVFGDTSKR*
BLAST of Cucsa.065490.1 vs. Swiss-Prot
Match: BB_ARATH (E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 2.0e-35 Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. Swiss-Prot
Match: BBR_ARATH (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 1.5e-25 Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. Swiss-Prot
Match: MBR2_ARATH (E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana GN=MBR2 PE=1 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 2.1e-16 Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. Swiss-Prot
Match: MBR1_ARATH (E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana GN=MBR1 PE=1 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 4.0e-15 Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. Swiss-Prot
Match: HIP1_ORYSJ (Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica GN=HIP1 PE=1 SV=2) HSP 1 Score: 80.1 bits (196), Expect = 2.0e-14 Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. TrEMBL
Match: A0A0A0L1Z5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290860 PE=4 SV=1) HSP 1 Score: 279.3 bits (713), Expect = 2.5e-72 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. TrEMBL
Match: A0A0A0LX98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613470 PE=4 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 5.0e-57 Identity = 101/126 (80.16%), Postives = 114/126 (90.48%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. TrEMBL
Match: A0A067F1T9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025212mg PE=4 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 3.0e-54 Identity = 94/123 (76.42%), Postives = 112/123 (91.06%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. TrEMBL
Match: A0A0D2TL58_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G072700 PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 4.4e-53 Identity = 96/125 (76.80%), Postives = 110/125 (88.00%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. TrEMBL
Match: I1LQI9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G057100 PE=4 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 9.7e-53 Identity = 99/126 (78.57%), Postives = 110/126 (87.30%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. TAIR10
Match: AT3G63530.1 (AT3G63530.1 RING/U-box superfamily protein) HSP 1 Score: 149.8 bits (377), Expect = 1.1e-36 Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. TAIR10
Match: AT3G19910.1 (AT3G19910.1 RING/U-box superfamily protein) HSP 1 Score: 117.1 bits (292), Expect = 8.2e-27 Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. TAIR10
Match: AT5G52140.1 (AT5G52140.1 RING/U-box superfamily protein) HSP 1 Score: 100.9 bits (250), Expect = 6.1e-22 Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. TAIR10
Match: AT3G47180.1 (AT3G47180.1 RING/U-box superfamily protein) HSP 1 Score: 100.9 bits (250), Expect = 6.1e-22 Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. TAIR10
Match: AT5G24870.1 (AT5G24870.1 RING/U-box superfamily protein) HSP 1 Score: 88.6 bits (218), Expect = 3.1e-18 Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. NCBI nr
Match: gi|449448944|ref|XP_004142225.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X1 [Cucumis sativus]) HSP 1 Score: 279.3 bits (713), Expect = 3.5e-72 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. NCBI nr
Match: gi|700199013|gb|KGN54171.1| (hypothetical protein Csa_4G290860 [Cucumis sativus]) HSP 1 Score: 279.3 bits (713), Expect = 3.5e-72 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. NCBI nr
Match: gi|659097625|ref|XP_008449725.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-like isoform X1 [Cucumis melo]) HSP 1 Score: 274.6 bits (701), Expect = 8.7e-71 Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. NCBI nr
Match: gi|778693179|ref|XP_011653591.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Cucumis sativus]) HSP 1 Score: 263.5 bits (672), Expect = 2.0e-67 Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 1
BLAST of Cucsa.065490.1 vs. NCBI nr
Match: gi|659097627|ref|XP_008449726.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-like isoform X2 [Cucumis melo]) HSP 1 Score: 258.8 bits (660), Expect = 4.9e-66 Identity = 119/125 (95.20%), Postives = 122/125 (97.60%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
|