Cucsa.058170.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATCCATTTCGCCCTCTACGGTTTCGTTTCTAGAGAGAGAAAATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCGCTAATTATCCTCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCCGGTAACCTCTTCTTTCTCATTTTTCCTCACTTGTTAATCTGCTCTTACCTTCTACTTTTGCTTCTTTTGCCATTTCTTCGATCTTATGCTTTTCCGTTGACTTGAACTACTGATCCTTGTTGCTATGTCAAATGTCTTAAGTTGTACTCTACTAAAAGGTTGATCTAATCACTTGAATAACCTCGTTTCGTCCGAATTTGAAAATTATGATCTACTGAACTGCCAAACATGGATTAATCGTCATATATTCTGTTATCTGTAATTTCGTTTGGAATTTTACCTTCAGCTTTCTAGTTCCTGCTAGTACTAGTTTTTTTGTTGAGCTTGAGATTAGATCCTGCCTTCTCTTGTTCTGTAAATGTGTTTTATATTGGGGTCTGCTTGGATGTTTATAATTCAAAATTGAAAGAAATGAAAAAATAGAATAGAGTAGGAAGCCACTTCGAACTTATGATCATACTTAACAACGCTCACAATGAAGTATTGTAGTTTATCAGTGTTATTTACTTTGAAGCTTTTTGTTATGGCACTTTGGTAGGATTCTTAGTATATGTTTAGGAGTGATTTTGTAACAGTGAAAAATAACTTGTATCATGTTCAAGATCACTCTAAAACACGCTTTTAATTGTAATACTATGAAATTTTCCTTTAAAAGGTGTAAAATGAAATATTGAATTGATTTTGAGTTATTAAAAGTGTATTTCAATGTGATTTTGGACATGACAAAAGTGATTTTAACCATTTCAAGATCACTACCAAACATGTTCTTACTTAACAAAAGTTTATTCTCTTTTGACTATTGAAATTCTTGATTTTAGCATTCTGAAATGCGTATGCTCTATTTCCCTTTTGCATTTTGTGAAGAATATGGGTGAAAATAAATGCCATGGTTTTATATATTCATATTTAACCCTTTTTCTCTTTAAAATTTGTTGTTGCACTATAAAATTTTGTTTAGTTTCATTTTGTTGGCTGTAAATTTGTGTAAATTCTTCGAAAATATATACTCTCAGATTTGCTTAACGTATATCAGTACAAAGACAAAAGTTGTAGCTCAAATTTCCTTTTATTTATCTATTTTTGAATTCTTTTCCAGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCCACGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTAAGTAGCCATAATTTTTGGACTTTATCATCATTTACATTACATTAGCATTGCCATCATAAACAAGCCAGGTGATATCATTATTGCCACAATAAGAGGGCGGATAGAGGGGGTGAGTTGGTTATTATAATTAGTAGTCATTATAGCCTTTGAGTTATAATACTTTGTAGGTTATAACAGTTTGTGTTTGAAGTGTAGATTATTTTAGTTTGAGTGTGAAATAGTAAACATTGTAACAAAAAGAGAAAAATTGTATGTTATAATAGTTGAAAATAATAATTATTATAATTGGAGTTCCAAACATGAAGTGTGGTATTATTATAATAGTCTACTCCACACACTTGGAGTTCGTAGCCCAAACACCTCTAAGCATTTTAAAATGTCACTGGTTATCTGGTCAGAAAGTTATCAATTCATCAGATGATGAGAATGCTACATGATATGAAAGCCCTAGGATTTGAAAATTAGGAATCCAATTGGTGAACCCCTAATATCAAATTCTAAAATCCCCAATTCAATTTCACAATAATCCAAGGGAATGAGTTAGATTTGAATCTCTCTTTGATCAAAGACCAAGAGATAAGGAGAACTAGTTCCTCACTCCAAGTTCGAACATCCTACAAGCAAGTTGATCAAATTTACCTGAATGTTATTGGCATGCAAATTGAGTTAAAAATTGCAAAAGAATGGTGATCAGGCTCTATCACCTACCAGAGAATTTTTATTGATAGAAAATCCTAGATCTTCAAAATATGAAAAACTAACGTGCTGTATTTTGTTTCCATACTTTATACCTAACTTACTGCACTAAACAAAACATAAAAAGTCTATTTTACCCCTAACTCAAAGGAAGGAAATAAAACTCAAATAAACATATATGGGTCCAATAATAAAAGCCCAAAAATAAAGTATGTTTTTGCAAAATAAAATAAATTACAAAACTAAATTGGTTCGAACCTATATCCTCAACTGACTCCAATTGTTGCTTTTAGAATCTCCTCAATTGAGTTCACCTCCTTTTGAATGTGAGAATTCAATGCTGACTTTAGTTTCTTATTGGCTCTTAAACATGTAATTTGTCCTTGAGGTGACGCAAGGGACTCCTGATATATATCACTACAGCTTCCATCTTATGAACTAAAACTAATCAGCTTCTAGATTGGAATGATAGAATTGCTACTGTGTTATGCATTCTTTTCTTTATCTTGCTATTTAAAAATTTCCCAGATTTTTGTGTCTACATATGAGTTGACTGATAAAAAAGAATACTAACTGTGTTTTTCAGGTTTATTATTGGTTTCTTCCTTGCTGCTATCCCATGGTATGCTGGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGTGAGTAACTTTTCATTATTATTTTAAACTTCTTCAGCTTCATGACGATGTTCTTATATCTCCAATATAGTTCTGCAATAGATTTCATCACAAGAACTGATTTTTCTGTTATATTTCTTTGCAACTTGCCAAAAGATATATTTGGTTAAAGCAGGAGGAGAGGCCTTCGGGAGTCGATGATTGTAATTTGTCAAAAACTAGACCTTGTCGTTCTTTTAGTTTTAGTATCTTGGGCAACGTTTGACAGTAAACAAAACTGATTTGTTACTTGTTTTTTTCTATAAAGATTTATTACTTGTTGAAAGGCTTTAACTAAAAAAATTGTTAGAAAATGAGTTAGTATATAAGTTATCCGGAATAAGTTCATTTATATTTTTTTTTCCTTTTATTCTCTTAAAACTGTTTATTTTCTTAACACTAAATGCCAGAAAATGATCCACGTAGGGGTTAGAGGCCTCTCAATTTTATTAGTAAACACTGTAGGATTTAATAATCTTCTTCACTCATTAACCAAGTTAGCCCGGTACCTCGTTGTTTGCCTGGCACTATTGCATTTTAGATTTCTGCGTTTGATGTTTTTATTATGAAAAAAATGCCCAGCTATTTATAAATTTCTTGATCCACCACCGTTGCAAGCTAATATTATTATGTTGCATGTCAGGCTGTTATTGCCACAGTTGCAATTATTTTCGGTGCGACAAGGGAAGCTGATGTCTGGTAACCAATCCTAAACTAAAAGTATTGTATATTTGCAAATATGTATGAACGACAGAGCCCATGAGCAAGCTTAGTTCCATTGAAACCTGAATCTGTGAGAGCCTATCACTACAAGAAATTACACTTTTCTCCATGGTTAACCCATTGGGAAAACTCCAAAAAGCTTCTGGAAAACTCCTCCCGACGCCACATTGGCCATTGCCACGATTGTCAGGAAAGATTTCCTCGGGAGAAGCTTAATTTCTTGTGGTGTATAGAGATATTGTTTAGTGGTTGTTTCCATGTTGTGCCCCTAAGAATTAGCTGTGCCATGCTGCAAAATCATGTTATTTGTTTTAAATCTACGATATGTGTTATGTGACTATTCATCTTAAACTCATGTGTAGAAACGTACTTATCCTTTGGTAAATATATTTATTTCTGCTTGTTTGGAATAAGCATTTGAACA GATCCATTTCGCCCTCTACGGTTTCGTTTCTAGAGAGAGAAAATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCGCTAATTATCCTCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCCGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCCACGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTTTATTATTGGTTTCTTCCTTGCTGCTATCCCATGGTATGCTGGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTATTGCCACAGTTGCAATTATTTTCGGTGCGACAAGGGAAGCTGATGTCTGGTAACCAATCCTAAACTAAAAGTATTGTATATTTGCAAATATGTATGAACGACAGAGCCCATGAGCAAGCTTAGTTCCATTGAAACCTGAATCTGTGAGAGCCTATCACTACAAGAAATTACACTTTTCTCCATGGTTAACCCATTGGGAAAACTCCAAAAAGCTTCTGGAAAACTCCTCCCGACGCCACATTGGCCATTGCCACGATTGTCAGGAAAGATTTCCTCGGGAGAAGCTTAATTTCTTGTGGTGTATAGAGATATTGTTTAGTGGTTGTTTCCATGTTGTGCCCCTAAGAATTAGCTGTGCCATGCTGCAAAATCATGTTATTTGTTTTAAATCTACGATATGTGTTATGTGACTATTCATCTTAAACTCATGTGTAGAAACGTACTTATCCTTTGGTAAATATATTTATTTCTGCTTGTTTGGAATAAGCATTTGAACA ATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCGCTAATTATCCTCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCCGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCCACGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTTTATTATTGGTTTCTTCCTTGCTGCTATCCCATGGTATGCTGGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTATTGCCACAGTTGCAATTATTTTCGGTGCGACAAGGGAAGCTGATGTCTGGTAA MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW*
BLAST of Cucsa.058170.1 vs. Swiss-Prot
Match: R18AL_ARATH (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2) HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29 Identity = 65/139 (46.76%), Postives = 87/139 (62.59%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. TrEMBL
Match: A0A0A0L1Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G621210 PE=4 SV=1) HSP 1 Score: 330.1 bits (845), Expect = 1.4e-87 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. TrEMBL
Match: A0A067LCW3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20159 PE=4 SV=1) HSP 1 Score: 218.0 bits (554), Expect = 8.0e-54 Identity = 102/156 (65.38%), Postives = 117/156 (75.00%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. TrEMBL
Match: W9QZI1_9ROSA (60S ribosomal protein L18a-1 OS=Morus notabilis GN=L484_024642 PE=4 SV=1) HSP 1 Score: 209.9 bits (533), Expect = 2.2e-51 Identity = 98/162 (60.49%), Postives = 121/162 (74.69%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. TrEMBL
Match: A0A151S283_CAJCA (60S ribosomal protein L18a-1 OS=Cajanus cajan GN=KK1_029397 PE=4 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 7.0e-50 Identity = 99/165 (60.00%), Postives = 115/165 (69.70%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. TrEMBL
Match: V4U033_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022163mg PE=4 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 2.9e-48 Identity = 97/168 (57.74%), Postives = 113/168 (67.26%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. TAIR10
Match: AT1G17080.1 (AT1G17080.1 Ribosomal protein L18ae family) HSP 1 Score: 177.2 bits (448), Expect = 7.9e-45 Identity = 87/160 (54.37%), Postives = 109/160 (68.12%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. TAIR10
Match: AT1G53560.1 (AT1G53560.1 Ribosomal protein L18ae family) HSP 1 Score: 157.5 bits (397), Expect = 6.5e-39 Identity = 71/137 (51.82%), Postives = 88/137 (64.23%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. TAIR10
Match: AT1G29970.2 (AT1G29970.2 60S ribosomal protein L18A-1) HSP 1 Score: 115.2 bits (287), Expect = 3.7e-26 Identity = 60/120 (50.00%), Postives = 74/120 (61.67%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. TAIR10
Match: AT3G14595.1 (AT3G14595.1 Ribosomal protein L18ae family) HSP 1 Score: 111.7 bits (278), Expect = 4.1e-25 Identity = 65/143 (45.45%), Postives = 81/143 (56.64%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. TAIR10
Match: AT1G54217.2 (AT1G54217.2 Ribosomal protein L18ae family) HSP 1 Score: 50.8 bits (120), Expect = 8.5e-07 Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. NCBI nr
Match: gi|449456534|ref|XP_004146004.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis sativus]) HSP 1 Score: 330.1 bits (845), Expect = 2.1e-87 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. NCBI nr
Match: gi|659103035|ref|XP_008452440.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]) HSP 1 Score: 305.1 bits (780), Expect = 7.1e-80 Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. NCBI nr
Match: gi|802546700|ref|XP_012086502.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Jatropha curcas]) HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53 Identity = 102/156 (65.38%), Postives = 117/156 (75.00%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. NCBI nr
Match: gi|747071859|ref|XP_011082821.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Sesamum indicum]) HSP 1 Score: 210.3 bits (534), Expect = 2.4e-51 Identity = 95/137 (69.34%), Postives = 109/137 (79.56%), Query Frame = 1
BLAST of Cucsa.058170.1 vs. NCBI nr
Match: gi|703085474|ref|XP_010092747.1| (60S ribosomal protein L18a-1 [Morus notabilis]) HSP 1 Score: 209.9 bits (533), Expect = 3.1e-51 Identity = 98/162 (60.49%), Postives = 121/162 (74.69%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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