Cucsa.040660.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGAAGCTCAGCGAAGGCGTATTTGTCGATGAAGAGCGTAGTCAGAGCTTGTTGGATGAAGATTCAGAAGACCTATGCTCTCTAACTGCTGTACAGGTACTTTAATCAACGATCATACAGTCTCCTCTTATGCAAATTTTCATGGGTTTTGCTCACTTTTCTTTCTTCTTCCTCTTCTTCTTTTTTTCTGAACAGAGACTGTACGCTTTTGGAGGCTGCTTGACCGGGGGCGTGGTTTGCATGATTTTGGTATGAACATTTGACCCACTTCCATGTTTAAACAGAATTTTACTTGCCTTTATGTTTTGTACATTTTTTGTTTGTGGGGAATTTTGATGATAATATTGGGTTTGGGTCTCAAGCTAAGCTCTGGGTATGACTAGTAACTTGGGTTTTCTCTGTATCCATTGCTTATTTTGGGATTTAGTAAGATGCATATTCTGTAACTATCCACTGGTTGGAGTTGGCCCTTGAGGCTTGAAGTGTAAATTGAAAAACACAACAAAGAAGGAACGTGGTATAAATCTGGATAGGAAGCTAAGGAATTTCCTCCAAGAACTAAAATGGGGGTACTGAAGAAAAATTAAGTTGCTTGGTCAATTGGGAGACTTTCTACCAATTGAAAATGGAGGACTCTTGATGAGGATTTAAGGTAGAAAAGTGCACCTCAATTATCAATTTGATATGGAGACATTTGACTGAATATGATGAAATGTGGGAATGGGATTTTATCCGTTAGCTATGGGAGAGTATAGAGGATATTTTTCAAGTAAGGAGGGTTGGATGCTACTTCTTTCAATTGGTATCATAGTTATGATCTAAACCTAGCTGTTCGGGTGAGATCCTTAGCGATTTCAAACAAAAGTAGTGAATATCATAGACGAATCCCCAAATCGGACAAAAAGTACTTGGAGCAACAAGCAAGTAATAACTCTATCAAGCTCACTGGTAGAGAAGTAGATCTTTGTTTGAGGGGAAGAGATCATGGGTCTGACAGGTGCTCAACACGAAGTGTACACAAAAATGATTGTGTTTGTGTTCTATCTGACTTTGCAATTGGGCATTGAGAAGAGCAAGCTCACTTAGGCAATTGAGAGTGGACAAATAATTGGGTGATTTTTTGTTCGAGGTGAGGATTGTTAGGAGTGGAAACAAAGTCGCATATTGGTTAGGGAATGAAGTGAAAAGTGATTGTGAGTACATAAGTGAAGACAATTATCTTCATTGGTACGAGACATTTTGGGTGGTAATAAAAGTAAAGTCATGAAGGTTTATGCTAAAATGGATAATATCATACCATTGTGGTGACTGGTGGAGGTTTCATTGTCCTTATCAAGGTGAAGCTTGAGAGGATGTCCTTGGAGTTTAAGCATGACATCCACAAAGAGCTTAACTGAACCAGAAATGGGCAGTGAGCATTAAGCAAGGAATTGTCAACGGCAATCTGGAAGGAAAGAAGCCATAGAGAAGTCAACTTCTCAGTGTAGGCATTATGACATGAGGGTAAAAATTAAGCTGTAGGGAGGGGACTCAAAGGAGAAATTTTGGTTTTAAAATCCAGTTAGTTTGTTTTTTGTTGCAATGAAGAAAAGAAACACGATCACCTGTCTTTTCGCTGTTATTAACTTTAAGCTGTATTGCAAATCTCAACTCAATAAAATGCAGTGCACTTAGGCTCTTGTCAAGTCAGTCAAAGACAAGGAGTAATGTCCCATTGTTATCAAGATGCAGACTTGAGAAAAAGGATAAAATCATATGGATTATTGCAGTAAAAAAAAACTCATGGGGTACTAGTGAATACAGGGTTCACAAGCTAAAATTTTCTTCATTATTGAATTATCATAATCAGTAAACAATAAGACTATTCAAGAGTTAAGGTTAATTGTCAATAACATAATATATTGCAGGCGATTGGCTCTACTAGATTGGGGGATGGAGTTTAAAAAGCTTATTGGTTCCTCAAATAGTCTGGAGTGTTTTGTTTCTACTCAGCCTTTATTAAATTAACCAAAATCAGCCAAAAACTTAAAAGACCCTATAATCATGCTGATTTGGAAGTTTAATGTTCCAAAGAAGATAAAAGTTTTTCTCTGGAATCTTGGCCATAAAATAATGAATGCTCAAGAAAGCTTAGGAACCACAACATTAACCCTTCAGTCTGTTTTTTGTGCTTAAAAGGAGAATAAAACACTGAGCTTCTTTCTCTTTGAGGGGATGGGAACAACTACCTAAGAATTTTGGTTTATGCTCTTGTTTACCTGAGAAGATGGGGATTGGCTTATTGAAGCCATGAATGGGGGTAGAATCTAAAGGAAAGATGAGAATTTTTTAGAGATGTGTCGCAGTGTGTTTGTGTGGGAGCTTTTGAAAGAATAAAGCGTAAGGATCTCTGAATATAAGTTGCTTGCTTTTGATGATTTTTGTAATTTTTTTAAAATTACATCCTTGATGTGAAGTCTTCACAAGGATTCTTTTTACAGCATAGCTGCAAAGAAATCCTCCAAAATTGGGAGGCTGGGTTAGTTGTCAACTGTGACCGGGCTCCTTACCCCCTAGGCTGTGTTCTTTTTTTTTTTTTGTGATGAATACATATGAGTTTCGATTAATATATATACACACACGGACGCACACATTGCAGGCTAATCTTTGTGTAATAGTGTTGTACTCTTTCACCCTTTAGTATCAATTGATGATTTTGTTTAGGAGTGTAAATGGGTTGGGTTAGGTAGATTTTTTGGACCAACTCGAATTTTTGGGTTGGTCAAATTGACAACCCAAATAACCCAAACAAGATCTTCAACTTAACCCAACCAAACCCGAAATTTGAGAGTTGGGTTGTCAGTTTATTTCTTTTCTTTTCTTTTTTTAAGTATATTATTTATTAACTTAAAATACTTAAATTTGTCTACAACACATTTTAATAACTAAAATTTCATAAAATTCAAATGAAATATAAAACTCAATTGAAATAAGTGTTAAATATCAAAATTCAACATATCTATTTACAAACTTCAAATAAACTTCATAATGATATGTATGAATTATAATATTTATAAGTTATATATATTTTAATAATATTAGAAATTCGAGTTGGGTTGGGTCAACCCGGATTTTTAAAAATGTAACCCGAACCCAGCCCAATAAAGAAAAAAACATAAAAAATTCATGTTGTATGGGCTGTCGGTTTATTTGAACACCCCTAATTTTGTTCATTGCTTCCCTTTTTCTTTTCTTCGTTGGTGACTTTTTTAAATCTCCGTGTTCTTTTGTCTTAAGTTCCATTTGGATTTCTATGATTCTACATTGATATATCATAGTGTCATTGATTTCAGTTTTGCTCATTATCTGAACCCGTGCTTATTAAGTGAGAAATTTGATCCGTTTACTACATTTTCTTCTTCTTGCAGTCATTACTTGTTTTTGCTAAGCCACTCAAACTTGCTGTACTTTTTGCATTTGGCAATGTTTTGGCAGTTGGAAGGTATAACCATTAAATTAGAAACCTGTTGTTTTTGTTATATTGTAAATATGTCAGTAGTAAAGAAGTATTATTTGGAGGAGTACTTTTGTTCACTTTCATTGCATTCTCACTTGCATTTAATACTTCTTGTAATCTTCTATCTCATATATTTCTATCAAGAAGAAGGTTTTTTTTATTTTTCAAACAAGAGGAAGATAATCGTGGGGGAAAACTTTTTACGTATTTCCAATGTGTTATTCCTTTTCCTTGAGGTGTTAATATTCCAAATTGCACCTTATTTGGCAGCACAACTTTCCTATTTGGACCTAGGCAACAAATAAGAATGATGTTTGATTCTGTTCGTATTCTTGCGACAGCTATTTACCTAGGATGTGTTGTTCTAGCTCTTATATGTGCTCTCTGGGTAAGTCACTATTCTGACTATATGACATATACAAGAAAGCGGACTTAAATTGCTAATGCATTAAGGTATTCAATGAACAATCTTCAATTAATCTGTGGAACACAATGTTAATGGCATTCGTATTAGGTTCCTCTTCAGCTGTTTCACAAGGTTCCCAAATACGGTTTTGCATTTTTTCTTTAACAAATAAAAGCATGTAATGTATCAAAATGTTATATCAACCTAGGATGGACTTATGCAAACAGTTATTGTCTCATATTGTCTTTTAACTGAGTTTCATTGCTATTCATTTTTCATTTTTCAGATCCACAATAAGATATTGACAGTGATTGCAATAATAAGCGAGATATGTGCACTAATATGGTACGTTTACTTCTATCAATTGCCATCGTCCACTCAATTCAAGTTCCATTTAAAACTAGAGGATGAAAAGACATTTCCAGTCAGTGAAAATGTGTCCAGTCATATCTTGCGAGACTCTTCTTGCATCTAAACTAGATTAGATCATAACTTTCTTGGTTTATCATGTTCCAGGTATAGTTTGAGCTATATCCCTTTTGCCCGGAGGATGGTCTCTCAATTGATGATCCGATTTTGTGATACGGAACTATAGACAATGAAACATGCGATAATGATTGACGATTCAATGTTTCAAGATCTGAGATTGTTTTTTGTCTTGGTTTTTTTTCACATTTTAGTGAGCACAACACCGGTTGGAGATTTGTTTTTTTCTTATTTTTTTTGGTCGAAGTTGAGTTTGTCTACATAAATGTATAATCCAAAAGTCAGTTCAATGCTTGTGCTAATTTTTTAAATATAATAGCAT ATGTGGAAGCTCAGCGAAGGCGTATTTGTCGATGAAGAGCGTAGTCAGAGCTTGTTGGATGAAGATTCAGAAGACCTATGCTCTCTAACTGCTGTACAGAGACTGTACGCTTTTGGAGGCTGCTTGACCGGGGGCGTGGTTTGCATGATTTTGTCATTACTTGTTTTTGCTAAGCCACTCAAACTTGCTGTACTTTTTGCATTTGGCAATGTTTTGGCAGTTGGAAGCACAACTTTCCTATTTGGACCTAGGCAACAAATAAGAATGATGTTTGATTCTGTTCGTATTCTTGCGACAGCTATTTACCTAGGATGTGTTGTTCTAGCTCTTATATGTGCTCTCTGGATCCACAATAAGATATTGACAGTGATTGCAATAATAAGCGAGATATGTGCACTAATATGGTATAGTTTGAGCTATATCCCTTTTGCCCGGAGGATGGTCTCTCAATTGATGATCCGATTTTGTGATACGGAACTATAGACAATGAAACATGCGATAATGATTGACGATTCAATGTTTCAAGATCTGAGATTGTTTTTTGTCTTGGTTTTTTTTCACATTTTAGTGAGCACAACACCGGTTGGAGATTTGTTTTTTTCTTATTTTTTTTGGTCGAAGTTGAGTTTGTCTACATAAATGTATAATCCAAAAGTCAGTTCAATGCTTGTGCTAATTTTTTAAATATAATAGCAT ATGTGGAAGCTCAGCGAAGGCGTATTTGTCGATGAAGAGCGTAGTCAGAGCTTGTTGGATGAAGATTCAGAAGACCTATGCTCTCTAACTGCTGTACAGAGACTGTACGCTTTTGGAGGCTGCTTGACCGGGGGCGTGGTTTGCATGATTTTGTCATTACTTGTTTTTGCTAAGCCACTCAAACTTGCTGTACTTTTTGCATTTGGCAATGTTTTGGCAGTTGGAAGCACAACTTTCCTATTTGGACCTAGGCAACAAATAAGAATGATGTTTGATTCTGTTCGTATTCTTGCGACAGCTATTTACCTAGGATGTGTTGTTCTAGCTCTTATATGTGCTCTCTGGATCCACAATAAGATATTGACAGTGATTGCAATAATAAGCGAGATATGTGCACTAATATGGTATAGTTTGAGCTATATCCCTTTTGCCCGGAGGATGGTCTCTCAATTGATGATCCGATTTTGTGATACGGAACTATAG MWKLSEGVFVDEERSQSLLDEDSEDLCSLTAVQRLYAFGGCLTGGVVCMILSLLVFAKPLKLAVLFAFGNVLAVGSTTFLFGPRQQIRMMFDSVRILATAIYLGCVVLALICALWIHNKILTVIAIISEICALIWYSLSYIPFARRMVSQLMIRFCDTEL*
BLAST of Cucsa.040660.1 vs. Swiss-Prot
Match: SFT2B_HUMAN (Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 3.5e-21 Identity = 57/146 (39.04%), Postives = 81/146 (55.48%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. Swiss-Prot
Match: SFT2B_MOUSE (Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 1.9e-19 Identity = 55/146 (37.67%), Postives = 82/146 (56.16%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. Swiss-Prot
Match: SFT2A_HUMAN (Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 2.1e-18 Identity = 55/127 (43.31%), Postives = 73/127 (57.48%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. Swiss-Prot
Match: SFT2A_RAT (Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17 Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. Swiss-Prot
Match: SFT2A_MOUSE (Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=1 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 3.1e-17 Identity = 53/127 (41.73%), Postives = 72/127 (56.69%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. TrEMBL
Match: A0A0A0LC39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G603050 PE=4 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 1.0e-83 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. TrEMBL
Match: A0A059DEZ9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01469 PE=4 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 1.7e-59 Identity = 115/161 (71.43%), Postives = 134/161 (83.23%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. TrEMBL
Match: A0A067E770_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031391mg PE=4 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 1.6e-57 Identity = 107/160 (66.88%), Postives = 132/160 (82.50%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. TrEMBL
Match: V7CXA0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G078100g PE=4 SV=1) HSP 1 Score: 229.9 bits (585), Expect = 2.1e-57 Identity = 109/160 (68.12%), Postives = 128/160 (80.00%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. TrEMBL
Match: V4U832_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006104mg PE=4 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 3.6e-57 Identity = 106/160 (66.25%), Postives = 132/160 (82.50%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. TAIR10
Match: AT5G24170.1 (AT5G24170.1 Got1/Sft2-like vescicle transport protein family) HSP 1 Score: 204.1 bits (518), Expect = 6.3e-53 Identity = 97/146 (66.44%), Postives = 119/146 (81.51%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. TAIR10
Match: AT5G23550.1 (AT5G23550.1 Got1/Sft2-like vescicle transport protein family) HSP 1 Score: 164.5 bits (415), Expect = 5.5e-41 Identity = 79/149 (53.02%), Postives = 105/149 (70.47%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. NCBI nr
Match: gi|449455944|ref|XP_004145710.1| (PREDICTED: vesicle transport protein SFT2B [Cucumis sativus]) HSP 1 Score: 317.4 bits (812), Expect = 1.4e-83 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. NCBI nr
Match: gi|659082018|ref|XP_008441622.1| (PREDICTED: vesicle transport protein SFT2B [Cucumis melo]) HSP 1 Score: 297.4 bits (760), Expect = 1.6e-77 Identity = 150/161 (93.17%), Postives = 153/161 (95.03%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. NCBI nr
Match: gi|702242983|ref|XP_010049189.1| (PREDICTED: vesicle transport protein SFT2B [Eucalyptus grandis]) HSP 1 Score: 236.9 bits (603), Expect = 2.5e-59 Identity = 115/161 (71.43%), Postives = 134/161 (83.23%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. NCBI nr
Match: gi|1009122809|ref|XP_015878202.1| (PREDICTED: vesicle transport protein SFT2B [Ziziphus jujuba]) HSP 1 Score: 235.7 bits (600), Expect = 5.5e-59 Identity = 116/162 (71.60%), Postives = 139/162 (85.80%), Query Frame = 1
BLAST of Cucsa.040660.1 vs. NCBI nr
Match: gi|645258117|ref|XP_008234734.1| (PREDICTED: vesicle transport protein SFT2B [Prunus mume]) HSP 1 Score: 232.6 bits (592), Expect = 4.7e-58 Identity = 114/162 (70.37%), Postives = 135/162 (83.33%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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