Cucsa.022830.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.022830.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Cysteine-rich receptor-like protein kinase 25
Location	scaffold00320 : 70175 .. 70399 (-)
Sequence length	147

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCTCAACTCTCAATTGGCTACCTTTAAGACAATCATTGGGAGTAAGAAAGATTGGGTAGTATATGGATTCAATTGCTTTATGTGGTATCGTGATCATCAGTTTTACTTCAAATTTTCAACAAGTGCATGTGAGTTCAGATTTTGTGCTTTTAGTTGTTTGCAAGATCACAACATAAAAAAAGTTTCTTGTTTTAATGCAGGTGGAAGATGGTCTTTTCCTTGA

mRNA sequence

TGTCTCAACTCTCAATTGGCTACCTTTAAGACAATCATTGGGAGTAAGAAAGATTGGGTAGTATATGGATTCAATTGCTTTATGTGGTATCGTGATCATCAGTTTTACTTCAAATTTTCAACAAGTGGAAGATGGTCTTTTCCTTGA

Coding sequence (CDS)

TGTCTCAACTCTCAATTGGCTACCTTTAAGACAATCATTGGGAGTAAGAAAGATTGGGTAGTATATGGATTCAATTGCTTTATGTGGTATCGTGATCATCAGTTTTACTTCAAATTTTCAACAAGTGGAAGATGGTCTTTTCCTTGA

Protein sequence

CLNSQLATFKTIIGSKKDWVVYGFNCFMWYRDHQFYFKFSTSGRWSFP*

Homology

[Close]

BLAST of Cucsa.022830.1 vs. TrEMBL
Match: A0A0A0LUB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G065400 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.2e-15
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1


Query: 1   CLNSQLATFKTIIGSKKDWVVYGFNCFMWYRDHQFYFKFSTS 43
           CLNSQLATF+T IGSKKDW +YGFNCFMWY DHQFYF FSTS
Sbjct: 210 CLNSQLATFRTTIGSKKDWEIYGFNCFMWYHDHQFYFNFSTS 251

[Close]

BLAST of Cucsa.022830.1 vs. TrEMBL
Match: V7BQQ4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G196800g PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-08
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1


Query: 1   CLNSQLATFKTIIGSKKDWVVYGFNCFMWYRDHQFYFKFST--SGRW 46
           CL++QL TF+T+IG+K+ W +YG NCFMWY D+QFY   ST  S  W
Sbjct: 207 CLDAQLVTFRTVIGNKRRWEIYGSNCFMWYNDYQFYSNGSTLLSAAW 253

[Close]

BLAST of Cucsa.022830.1 vs. TrEMBL
Match: A0A0S3S2A6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G029800 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-08
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1


Query: 1   CLNSQLATFKTIIGSKKDWVVYGFNCFMWYRDHQFYFKFST--SGRW 46
           CL++QL TF+T+IG+K+ W +YG NCFMWY D+QFY   ST  S  W
Sbjct: 207 CLDAQLLTFRTVIGNKRRWEIYGSNCFMWYNDYQFYSNGSTLLSAAW 253

[Close]

BLAST of Cucsa.022830.1 vs. TrEMBL
Match: A0A0L9VFV7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g255200 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-08
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 1   CLNSQLATFKTIIGSKKDWVVYGFNCFMWYRDHQFYFKFST 42
           CL++QL TF+T+IG+K+ W +YG NCFMWY D+QFY   ST
Sbjct: 239 CLDAQLLTFRTVIGNKRRWEIYGSNCFMWYNDYQFYSNGST 279

[Close]

BLAST of Cucsa.022830.1 vs. TrEMBL
Match: I1M2H5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G251500 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-08
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 1   CLNSQLATFKTIIGSKKDWVVYGFNCFMWYRDHQFYFKFST--SGRW 46
           CL+SQL  F+T+IG+K+ W +YG NCFMWY D+QFY   ST  S  W
Sbjct: 210 CLDSQLENFRTVIGNKRRWEIYGSNCFMWYNDYQFYSNGSTLLSAAW 256

[Close]

BLAST of Cucsa.022830.1 vs. NCBI nr
Match: gi|778658530|ref|XP_011652874.1| (PREDICTED: cysteine-rich repeat secretory protein 38-like [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 7.2e-18
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 1


Query: 1   CLNSQLATFKTIIGSKKDWVVYGFNCFMWYRDHQFYFKFSTS--GRWSFP 49
           CLNSQLATF+T IGSKKDW +YGFNCFMWY DHQFYF FSTS  GRWSFP
Sbjct: 210 CLNSQLATFRTTIGSKKDWEIYGFNCFMWYHDHQFYFNFSTSAGGRWSFP 259

[Close]

BLAST of Cucsa.022830.1 vs. NCBI nr
Match: gi|659067839|ref|XP_008441555.1| (PREDICTED: cysteine-rich repeat secretory protein 38-like [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-17
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 1


Query: 1   CLNSQLATFKTIIGSKKDWVVYGFNCFMWYRDHQFYFKFSTS--GRWSFP 49
           CLNSQLATF+T IGSKKDW +YGFNCFMWY DH FYF FSTS  GRWSFP
Sbjct: 211 CLNSQLATFRTTIGSKKDWEIYGFNCFMWYHDHPFYFNFSTSAGGRWSFP 260

[Close]

BLAST of Cucsa.022830.1 vs. NCBI nr
Match: gi|700209473|gb|KGN64569.1| (hypothetical protein Csa_1G065400 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 7.4e-15
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1


Query: 1   CLNSQLATFKTIIGSKKDWVVYGFNCFMWYRDHQFYFKFSTS 43
           CLNSQLATF+T IGSKKDW +YGFNCFMWY DHQFYF FSTS
Sbjct: 210 CLNSQLATFRTTIGSKKDWEIYGFNCFMWYHDHQFYFNFSTS 251

[Close]

BLAST of Cucsa.022830.1 vs. NCBI nr
Match: gi|593695603|ref|XP_007148300.1| (hypothetical protein PHAVU_006G196800g [Phaseolus vulgaris])

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-08
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1


Query: 1   CLNSQLATFKTIIGSKKDWVVYGFNCFMWYRDHQFYFKFST--SGRW 46
           CL++QL TF+T+IG+K+ W +YG NCFMWY D+QFY   ST  S  W
Sbjct: 207 CLDAQLVTFRTVIGNKRRWEIYGSNCFMWYNDYQFYSNGSTLLSAAW 253

[Close]

BLAST of Cucsa.022830.1 vs. NCBI nr
Match: gi|951042847|ref|XP_014518245.1| (PREDICTED: putative cysteine-rich receptor-like protein kinase 9 [Vigna radiata var. radiata])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-08
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1


Query: 1   CLNSQLATFKTIIGSKKDWVVYGFNCFMWYRDHQFYFKFST--SGRW 46
           CL++QL TF+T+IG+K+ W +YG NCFMWY D+QFY   ST  S  W
Sbjct: 207 CLDAQLLTFRTVIGNKRRWEIYGSNCFMWYNDYQFYSNGSTLLSAAW 253

The following BLAST results are available for this feature:

BLAST of Cucsa.022830.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUB6_CUCSA	5.2e-15	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G065400 PE=4 SV=1	[more]
V7BQQ4_PHAVU	1.6e-08	57.45	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G196800g PE=4 SV=1	[more]
A0A0S3S2A6_PHAAN	2.1e-08	57.45	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G029800 PE=...	[more]
A0A0L9VFV7_PHAAN	2.7e-08	60.98	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g255200 PE=4 SV=1	[more]
I1M2H5_SOYBN	3.6e-08	57.45	Uncharacterized protein OS=Glycine max GN=GLYMA_13G251500 PE=4 SV=1	[more]

BLAST of Cucsa.022830.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778658530\|ref\|XP_011652874.1\|	7.2e-18	84.00	PREDICTED: cysteine-rich repeat secretory protein 38-like [Cucumis sativus]	[more]
gi\|659067839\|ref\|XP_008441555.1\|	3.6e-17	82.00	PREDICTED: cysteine-rich repeat secretory protein 38-like [Cucumis melo]	[more]
gi\|700209473\|gb\|KGN64569.1\|	7.4e-15	85.71	hypothetical protein Csa_1G065400 [Cucumis sativus]	[more]
gi\|593695603\|ref\|XP_007148300.1\|	2.3e-08	57.45	hypothetical protein PHAVU_006G196800g [Phaseolus vulgaris]	[more]
gi\|951042847\|ref\|XP_014518245.1\|	3.0e-08	57.45	PREDICTED: putative cysteine-rich receptor-like protein kinase 9 [Vigna radiata ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.022830	Cucsa.022830	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.022830.1	Cucsa.022830.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.022830.1.CDS.2	Cucsa.022830.1.CDS.2	CDS
Cucsa.022830.1.CDS.1	Cucsa.022830.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32099	CYSTEINE-RICH REPEAT SECRETORY PROTEIN	coord: 1..41 score: 4.4
None	No IPR available	PANTHER	PTHR32099:SF3	SUBFAMILY NOT NAMED	coord: 1..41 score: 4.4