Cucsa.394270 (gene) Cucumber (Gy14) v1

NameCucsa.394270
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionCytochrome b-c1 complex, subunit 8 protein
Locationscaffold04100 : 297146 .. 298958 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGCTTAGATTTGGGAACAAGAGCCAACCCCTTTCGACCGAGAAGCCGTCGTCTTCACCATATTCGCCTGAGCCATTCGATAGCCACGTTTGAGGAAGAATTAGGACTGCCATGGGGAAGCAACCGGTTCGTATGAAGGCTGTGGTCTACGCTTTATCGCCATTCCAGCAGAAGATCATGTCAGGGTTATGGAATGACTTGTCCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGTGCCGCCCTTCTAATTACTCCTGTCGTCGGCTCCTACACGTATTCTTTTTtAAACTCCTTGTTCTTTTCCTTAATTTTCTTATTTTTtAAATTTAGAATTTAGGGTTTGCTTGTCGAATGGTTTCATCCTTTCATATTTCTAGCTGTTATCATTTAAAAaTATGGAAAAATAAAATGAAATCATAACTTGTTTTTCGATGAGCTTGGTAGCTTTGTATTTTGATAACTCTTGGTTGGGTCCAATTTAGATAAGATTTTATTtCTTGATCAGATACAAACTGGAAAGGCATAATTCGGCGACGTAGAATTCCTGTAATGATTTGGTCTTTTCTGGACTTAGCCTTAGATCGAAAGTGAAATATTTCTCCCGAAGCTATCATATTTGAAATATTCGCCTATACGAATTTCTACTGAACTGAGGGCATTTTTTTTtATAGATTTCATCTTATTGAGCATACAGGTTTGATTGATTGTTTATTCTTTGGAATGGAATAGAAAGCTGTGTTGTTTTTTTAAAAAAAAGTATAGGCATTACTTTACCTTATTGAAATTGTTCCTAGGTCATGTCAATCAGATCTTTGATCACCCTTCTCGGGTATGTGTATAGTTTCAATTGCTTTAGTCTGTCTTTAATTAGCAAAACTAGTTCTGTATTTTGCATAGGTTGGAAGTAATAGTATTTTAGATATAGATTACAGAAAAGACATTAAGAAGTACCATCCCCTAATCCAAGATTGATCCGGGCAAGAGGTTTAAAAAAACAATCCCAAACTCGTGTTGGATGATAATCCATGTTATTTAAGTGGGGCGTAAGAATAATTTTTTTGGGCATTTCCATGCACGAGAAAAGGTATTTATATAAGAATTTTGAGCACTAGATGGAAATGGAATGGTTTGAATTTTTGTTTTGGTTTTGGTTTTATGTTTTTGAAAATTATTCTTGTTTCTAACAACTTTCTGAAAGCTTTTCACCTTTCTTGAAATGCCTAAAGTTTTCCTTTTtATCTAAAGCGTGCACATTGCATCAACAGATAAAAGATGTCTCTCATGCGGTGTTAGTGTTAGACAAGGCCTAATCTTTCATGGATGTTTTTtCCTTCTATTTTCTTGAATTTTGATTGAAGTATCGTTTGTGTATATATTACATATTACACGCATAGGATAGATGAGTTCATGAAAATGTTGAAGCATATCTTGATTTTGATCTCCACGCAATGAAGGCATGATCATGTCTGTAAATGGACGCAGGTACGTACAGCAGTACAAGGAGAAGGAGAAGTTGTCTCACAGGTACTGAGCGCCTGGTCCCTTGATGTGATATGCCATCCCTCTACCTTGAAGAACTTTTGATCTTTATCTATTTTTTtGTTATATGCAAATGGAGCTCTGGTTTGTTAGACTATGAGGATGTGCTTTTATTTTGAGGAACATTTTCTCTCTTGTTTGTTGGAATAAATTACAACATTTTTTtGTTGTCAATGTGAACTATTATATAAAGATCAGTGTTATATTCCGTGATATCAAAGTATGACAAAAGCAGGACAGGACCAACATATTCATCCTTTCGTCTA

mRNA sequence

TGGCTTAGATTTGGGAACAAGAGCCAACCCCTTTCGACCGAGAAGCCGTCGTCTTCACCATATTCGCCTGAGCCATTCGATAGCCACGTTTGAGGAAGAATTAGGACTGCCATGGGGAAGCAACCGGTTCGTATGAAGGCTGTGGTCTACGCTTTATCGCCATTCCAGCAGAAGATCATGTCAGGGTTATGGAATGACTTGTCCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGTGCCGCCCTTCTAATTACTCCTGTCGTCGGCTCCTACACGTACGTACAGCAGTACAAGGAGAAGGAGAAGTTGTCTCACAGGTACTGAGCGCCTGGTCCCTTGATGTGATATGCCATCCCTCTACCTTGAAGAACTTTTGATCTTTATCTATTTTTTTGTTATATGCAAATGGAGCTCTGGTTTGTTAGACTATGAGGATGTGCTTTTATTTTGAGGAACATTTTCTCTCTTGTTTGTTGGAATAAATTACAACATTTTTTTGTTGTCAATGTGAACTATTATATAAAGATCAGTGTTATATTCCGTGATATCAAAGTATGACAAAAGCAGGACAGGACCAACATATTCATCCTTTCGTCTA

Coding sequence (CDS)

ATGGGGAAGCAACCGGTTCGTATGAAGGCTGTGGTCTACGCTTTATCGCCATTCCAGCAGAAGATCATGTCAGGGTTATGGAATGACTTGTCCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGTGCCGCCCTTCTAATTACTCCTGTCGTCGGCTCCTACACGTACGTACAGCAGTACAAGGAGAAGGAGAAGTTGTCTCACAGGTACTGA

Protein sequence

MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQQYKEKEKLSHRY*
BLAST of Cucsa.394270 vs. Swiss-Prot
Match: QCR8_SOLTU (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 8.7e-28
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGKQPV++KAVVYA+SPFQQKIM GLW DL GKIHHK+SENWISA LL+ P+VG+Y+YVQ
Sbjct: 1  MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQ 60

Query: 61 QYKEKEKLSHRY 73
           + EKEKL HRY
Sbjct: 61 HFLEKEKLEHRY 72

BLAST of Cucsa.394270 vs. TrEMBL
Match: A0A0A0LK55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348820 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.2e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60

Query: 61 QYKEKEKLSHR 72
          QYKEKEKLSHR
Sbjct: 61 QYKEKEKLSHR 71

BLAST of Cucsa.394270 vs. TrEMBL
Match: A0A059BJE6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03166 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-28
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGKQPVRMKAVVYALSPFQQKIM+GLW DL GKIHHKISENWISA LL+ P+VG+YTYVQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWKDLPGKIHHKISENWISATLLLAPLVGTYTYVQ 60

Query: 61 QYKEKEKLSHRY 73
           Y+EKEKL HRY
Sbjct: 61 NYQEKEKLEHRY 72

BLAST of Cucsa.394270 vs. TrEMBL
Match: W9RCV1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027750 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.7e-28
Identity = 60/71 (84.51%), Postives = 67/71 (94.37%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGKQPVRMKAVVYALSPFQQK+MSGLW DL GKIHHKISENWI+A LL+TP+VG+YTYVQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKVMSGLWKDLPGKIHHKISENWINAVLLVTPLVGTYTYVQ 60

Query: 61 QYKEKEKLSHR 72
           Y+EKEKL+HR
Sbjct: 61 IYQEKEKLAHR 71

BLAST of Cucsa.394270 vs. TrEMBL
Match: A0A067LMN1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17281 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-27
Identity = 58/72 (80.56%), Postives = 65/72 (90.28%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGKQPVRMKAVVYALSPFQQKIM GLW DL  KIHHK+SENWISA LL+TP++G+YTYVQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMPGLWKDLPNKIHHKVSENWISATLLLTPLIGTYTYVQ 60

Query: 61 QYKEKEKLSHRY 73
           Y+EKEKL HR+
Sbjct: 61 NYQEKEKLEHRF 72

BLAST of Cucsa.394270 vs. TrEMBL
Match: A9PCQ8_POPTR (Ubiquinol-cytochrome C reductase complex ubiquinone-binding family protein OS=Populus trichocarpa GN=POPTR_0019s15260g PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.1e-27
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGKQPV++KAVVYALSPFQQK+M GLW DL GKIHHK+SENWISA LL+ P+VG YTYVQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKVMPGLWKDLPGKIHHKVSENWISATLLLAPLVGVYTYVQ 60

Query: 61 QYKEKEKLSHRY 73
           Y+EKEKL HRY
Sbjct: 61 NYQEKEKLEHRY 72

BLAST of Cucsa.394270 vs. TAIR10
Match: AT3G10860.1 (AT3G10860.1 Cytochrome b-c1 complex, subunit 8 protein)

HSP 1 Score: 122.9 bits (307), Expect = 8.4e-29
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGKQPV++KAVVYALSPFQQKIM+GLW DL  KIHHK+SENWISA LL+TPVVG+Y Y Q
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60

Query: 61 QYKEKEKLSHRY 73
           +KE+EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72

BLAST of Cucsa.394270 vs. TAIR10
Match: AT5G05370.1 (AT5G05370.1 Cytochrome b-c1 complex, subunit 8 protein)

HSP 1 Score: 120.2 bits (300), Expect = 5.4e-28
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGKQPV++KAVVYALSPFQQKIM+GLW DL  KIHHK+SENWIS  LL+ PVVG+Y+Y Q
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQ 60

Query: 61 QYKEKEKLSHRY 73
           +KE+EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72

BLAST of Cucsa.394270 vs. NCBI nr
Match: gi|449450456|ref|XP_004142978.1| (PREDICTED: cytochrome b-c1 complex subunit 8-like [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60

Query: 61 QYKEKEKLSHRY 73
          QYKEKEKLSHRY
Sbjct: 61 QYKEKEKLSHRY 72

BLAST of Cucsa.394270 vs. NCBI nr
Match: gi|659087225|ref|XP_008444338.1| (PREDICTED: cytochrome b-c1 complex subunit 8-like [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-33
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGKQPVRMKAV+YALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60

Query: 61 QYKEKEKLSHRY 73
          QYKEKEKLSHRY
Sbjct: 61 QYKEKEKLSHRY 72

BLAST of Cucsa.394270 vs. NCBI nr
Match: gi|700207176|gb|KGN62295.1| (hypothetical protein Csa_2G348820 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60

Query: 61 QYKEKEKLSHR 72
          QYKEKEKLSHR
Sbjct: 61 QYKEKEKLSHR 71

BLAST of Cucsa.394270 vs. NCBI nr
Match: gi|702425310|ref|XP_010067635.1| (PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis])

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-28
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGKQPVRMKAVVYALSPFQQKIM+GLW DL GKIHHKISENWISA LL+ P+VG+YTYVQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWKDLPGKIHHKISENWISATLLLAPLVGTYTYVQ 60

Query: 61 QYKEKEKLSHRY 73
           Y+EKEKL HRY
Sbjct: 61 NYQEKEKLEHRY 72

BLAST of Cucsa.394270 vs. NCBI nr
Match: gi|720074213|ref|XP_010278946.1| (PREDICTED: cytochrome b-c1 complex subunit 8 [Nelumbo nucifera])

HSP 1 Score: 132.1 bits (331), Expect = 3.9e-28
Identity = 59/72 (81.94%), Postives = 66/72 (91.67%), Query Frame = 1

Query: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60
          MGK PVRMKAVVYALSPFQQK+MSGLW DL  KIHHK+SENW++AALL+TP+VG+YTYVQ
Sbjct: 1  MGKTPVRMKAVVYALSPFQQKVMSGLWKDLPSKIHHKVSENWVNAALLLTPLVGTYTYVQ 60

Query: 61 QYKEKEKLSHRY 73
           YKEKEKL HRY
Sbjct: 61 NYKEKEKLEHRY 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
QCR8_SOLTU8.7e-2876.39Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0LK55_CUCSA8.2e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348820 PE=4 SV=1[more]
A0A059BJE6_EUCGR1.6e-2884.72Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03166 PE=4 SV=1[more]
W9RCV1_9ROSA4.7e-2884.51Uncharacterized protein OS=Morus notabilis GN=L484_027750 PE=4 SV=1[more]
A0A067LMN1_JATCU1.8e-2780.56Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17281 PE=4 SV=1[more]
A9PCQ8_POPTR5.1e-2779.17Ubiquinol-cytochrome C reductase complex ubiquinone-binding family protein OS=Po... [more]
Match NameE-valueIdentityDescription
AT3G10860.18.4e-2976.39 Cytochrome b-c1 complex, subunit 8 protein[more]
AT5G05370.15.4e-2873.61 Cytochrome b-c1 complex, subunit 8 protein[more]
Match NameE-valueIdentityDescription
gi|449450456|ref|XP_004142978.1|1.8e-33100.00PREDICTED: cytochrome b-c1 complex subunit 8-like [Cucumis sativus][more]
gi|659087225|ref|XP_008444338.1|2.4e-3398.61PREDICTED: cytochrome b-c1 complex subunit 8-like [Cucumis melo][more]
gi|700207176|gb|KGN62295.1|1.2e-32100.00hypothetical protein Csa_2G348820 [Cucumis sativus][more]
gi|702425310|ref|XP_010067635.1|2.3e-2884.72PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis][more]
gi|720074213|ref|XP_010278946.1|3.9e-2881.94PREDICTED: cytochrome b-c1 complex subunit 8 [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004205Cytochrome b-c1 complex subunit 8
IPR020101Cyt_b-c1_8-plants
Vocabulary: Molecular Function
TermDefinition
GO:0008121ubiquinol-cytochrome-c reductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO:0070469respiratory chain
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0015992 proton transport
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0070469 respiratory chain
cellular_component GO:0045275 respiratory chain complex III
molecular_function GO:0008121 ubiquinol-cytochrome-c reductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.394270.1Cucsa.394270.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004205Cytochrome b-c1 complex subunit 8GENE3DG3DSA:1.20.5.210coord: 9..65
score: 4.
IPR004205Cytochrome b-c1 complex subunit 8unknownSSF81508Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 10..65
score: 4.8
IPR020101Cytochrome b-c1 complex subunit 8, plantsPRODOMPD056240coord: 2..72
score: 7.0
IPR020101Cytochrome b-c1 complex subunit 8, plantsPFAMPF10890DUF2741coord: 1..72
score: 2.7
NoneNo IPR availablePANTHERPTHR34559FAMILY NOT NAMEDcoord: 2..72
score: 2.1
NoneNo IPR availablePANTHERPTHR34559:SF1SUBFAMILY NOT NAMEDcoord: 2..72
score: 2.1

The following gene(s) are paralogous to this gene:

None