CmoCh05G000230 (gene) Cucurbita moschata (Rifu)

NameCmoCh05G000230
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCytochrome b-c1 complex subunit 8
LocationCmo_Chr05 : 91854 .. 93828 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCGATTTTAGAAAATAAAAAAGGGAAAAAAACGCAATACGATTTCTCAAGCGTCCGATAGGTAGAAAATCCAACGGTGAGTGTTAGTTTGAAATACGCAGTTTCTCGAAGAAGAGTCTGGCTTAGATTTGAGAGCAAGAACCAACCCCTTTCGACCCAAAAGCCGCCATCTTCATCGTAATCTCCTGAGGCATTCGATAGCCGCGTTTGAAGAAGAGTTAGGATCGCCATGGGGAAGCAACCTGTTCGGATGAAGGCTGTGATCTATGCTTTATCGCCGTTCCAGCAGAAGACCATGTCAGGGTTATGGAACGACTTGACCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGTGCCACCCTTCTAATCACCCCCGTCGTCGGAACCTACACGTAATTTTTTTATCTCCTTTTTCCTTTCCTTAATTTCATATCTTTTGAAATTTCGATTTTAGGGTTTGCCCGTTGAATGCTTTCCTCCCTTCATATTTCAATATGTTATCAATTTTTTTTCTTCTTAAAATCAAGTCTTCATTTGTTTCTCGACGAGCTCGGTAGTTCGCCTTTTGATAACACTTGGTTGGGTCCAGTCTAGGTGAGAAATCTATTAATCAGATTCAAAGAGGAAACAATTCCGTCGTAGAATTCTATTAATGATTTGGTCTTTTTTTTCTTTTTTATAGACTTAGCCTTAAGATCTAAAATGTTAAATATTTTCCTCAAAGCAATCAAATTTTTACTGGAACTGAACACCATATTGCATCTTATTGCGCATTCAGATTGATTTGTTTTTTTATCCGTGGGAATGGAATAGGAACATCTATGTTTTTATTTTTATATCTATTTCTTTTTGGAGCGATCTCGTGATAATGTTATTGTCCTCAACTGCAAGTTTTCATTTCTGTTTCCGATTTTGTTATCAGTAGGCGTTGCCGCACTTGATTGATACTGTTCCTAGTTCATGTCAATCAGATTTGTAGTCACTCTTCCCCCGTCTGTGTATAGTTTTATTAACCTTTAAATACTTTGGTCTGTTTTAAATTCACGCACTCTACGATCGAAGAGCAAAATTAGTTCTATAGTGTATAGGGTAGAGCTATTAGCTTTTGGATATATTATAGAATAGAGATTAAGAGTTATCATCCCCACATGCAAGATTGAGGAATTGGATCCGGGCAAGAGGTTTAGAAATCAATCTAAAACTTGTGTGAGACGAAAAAATGACATCTTTGTAGCAGAATGATGAAATTAGCATTACCATGCATGAGGAAACGTTGTATTCTTCAAGTATTTTGAGCTCTAGATGGGATGGTTTGATAGTCATTTTTTTGGTTATAACTAAAATTTCCATTTTGCCTAAAGATGTATTATGCAGTCTTGGCGTCGGACAAGACCAAATTATGGATGGGTCTCGAGTTTTTGTTAACTTCGATTGGAGTATCGTTTGCATATACATGTATATGATAAATGACTTGAATTAGTTAATTGATCGGTGAAAAGTGCCTCCATGTTTGTTGATGAACATGTGGATGTATATGATTCAGTCGTAAACTTGTTATTTTACTCTCTGGATGCAGGTACGCACAGCAGTACAAGGAGAATGAAAAGTTGTCTCACAGGTACTGAAAGCGCCTGGACCTTGAAGAAGTCAAAATGGAGCTCTGATTTCTTAGGCTATGAGGATGTGCTTTTATTTTGAGGAACATTTTCTCACTTGTTTGTTGGAATAAATTACTACATTTTTTTTTCTGTCGATCTGTGTTACACGCATTGGAATGATGCGAACTGATGCGTAATCGCCACCCTCTGCAGACTTCTCAATACCAACCAAACTTTTAAGACTCTGATTAGGTTCCATGATATCGAAGTATCAACCTTTTTTTCCCCTCCATTTTCTCCTCCTCTTTACATTAATTACCTTCATCCTCCCTATTATGCTCACGATTCGTAAAAGTCACCAAAATTCAG

mRNA sequence

AGCCGATTTTAGAAAATAAAAAAGGGAAAAAAACGCAATACGATTTCTCAAGCGTCCGATAGGTAGAAAATCCAACGGTGAGTGTTAGTTTGAAATACGCAGTTTCTCGAAGAAGAGTCTGGCTTAGATTTGAGAGCAAGAACCAACCCCTTTCGACCCAAAAGCCGCCATCTTCATCGTAATCTCCTGAGGCATTCGATAGCCGCGTTTGAAGAAGAGTTAGGATCGCCATGGGGAAGCAACCTGTTCGGATGAAGGCTGTGATCTATGCTTTATCGCCGTTCCAGCAGAAGACCATGTCAGGGTTATGGAACGACTTGACCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGTGCCACCCTTCTAATCACCCCCGTCGTCGGAACCTACACGTACGCACAGCAGTACAAGGAGAATGAAAAGTTGTCTCACAGGTACTGAAAGCGCCTGGACCTTGAAGAAGTCAAAATGGAGCTCTGATTTCTTAGGCTATGAGGATGTGCTTTTATTTTGAGGAACATTTTCTCACTTGTTTGTTGGAATAAATTACTACATTTTTTTTTCTGTCGATCTGTGTTACACGCATTGGAATGATGCGAACTGATGCGTAATCGCCACCCTCTGCAGACTTCTCAATACCAACCAAACTTTTAAGACTCTGATTAGGTTCCATGATATCGAAGTATCAACCTTTTTTTCCCCTCCATTTTCTCCTCCTCTTTACATTAATTACCTTCATCCTCCCTATTATGCTCACGATTCGTAAAAGTCACCAAAATTCAG

Coding sequence (CDS)

ATGGGGAAGCAACCTGTTCGGATGAAGGCTGTGATCTATGCTTTATCGCCGTTCCAGCAGAAGACCATGTCAGGGTTATGGAACGACTTGACCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGTGCCACCCTTCTAATCACCCCCGTCGTCGGAACCTACACGTACGCACAGCAGTACAAGGAGAATGAAAAGTTGTCTCACAGGTACTGA
BLAST of CmoCh05G000230 vs. Swiss-Prot
Match: QCR8_SOLTU (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 2.5e-27
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPV++KAV+YA+SPFQQK M GLW DL GKIHHK+SENWISATLL+ P+VGTY+Y Q
Sbjct: 1  MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQ 60

Query: 61 QYKENEKLSHRY 73
           + E EKL HRY
Sbjct: 61 HFLEKEKLEHRY 72

BLAST of CmoCh05G000230 vs. TrEMBL
Match: A0A0A0LK55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348820 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.9e-30
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK MSGLWNDL+GKIHHKISENWISA LLITPVVG+YTY Q
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60

Query: 61 QYKENEKLSHR 72
          QYKE EKLSHR
Sbjct: 61 QYKEKEKLSHR 71

BLAST of CmoCh05G000230 vs. TrEMBL
Match: A0A059BJE6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03166 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.6e-28
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK M+GLW DL GKIHHKISENWISATLL+ P+VGTYTY Q
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWKDLPGKIHHKISENWISATLLLAPLVGTYTYVQ 60

Query: 61 QYKENEKLSHRY 73
           Y+E EKL HRY
Sbjct: 61 NYQEKEKLEHRY 72

BLAST of CmoCh05G000230 vs. TrEMBL
Match: W9RCV1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027750 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.3e-27
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK MSGLW DL GKIHHKISENWI+A LL+TP+VGTYTY Q
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKVMSGLWKDLPGKIHHKISENWINAVLLVTPLVGTYTYVQ 60

Query: 61 QYKENEKLSHR 72
           Y+E EKL+HR
Sbjct: 61 IYQEKEKLAHR 71

BLAST of CmoCh05G000230 vs. TrEMBL
Match: C5Z5C6_SORBI (Putative uncharacterized protein Sb10g005110 OS=Sorghum bicolor GN=Sb10g005110 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.3e-27
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGK PVRMKAV+YALSPFQQK M GLW D+T KIHHK++ENWISATLL+TPVVGTY YA 
Sbjct: 1  MGKMPVRMKAVVYALSPFQQKVMPGLWKDITTKIHHKVTENWISATLLVTPVVGTYQYAM 60

Query: 61 QYKENEKLSHRY 73
           YKE EKLSHRY
Sbjct: 61 WYKEQEKLSHRY 72

BLAST of CmoCh05G000230 vs. TrEMBL
Match: I1H0J1_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-27
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGK PVRMKAV+YALSPFQQ+ M GLW D+T KIHHK+SENWISATLL+TPVVGTY YA 
Sbjct: 16 MGKMPVRMKAVVYALSPFQQQVMPGLWKDITTKIHHKVSENWISATLLLTPVVGTYQYAM 75

Query: 61 QYKENEKLSHRY 73
           YKE EKLSHRY
Sbjct: 76 YYKEQEKLSHRY 87

BLAST of CmoCh05G000230 vs. TAIR10
Match: AT3G10860.1 (AT3G10860.1 Cytochrome b-c1 complex, subunit 8 protein)

HSP 1 Score: 125.9 bits (315), Expect = 9.8e-30
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQK M+GLW DL  KIHHK+SENWISATLL+TPVVGTY YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60

Query: 61 QYKENEKLSHRY 73
           +KE EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72

BLAST of CmoCh05G000230 vs. TAIR10
Match: AT5G05370.1 (AT5G05370.1 Cytochrome b-c1 complex, subunit 8 protein)

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-28
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQK M+GLW DL  KIHHK+SENWIS  LL+ PVVGTY+YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQ 60

Query: 61 QYKENEKLSHRY 73
           +KE EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72

BLAST of CmoCh05G000230 vs. NCBI nr
Match: gi|659087225|ref|XP_008444338.1| (PREDICTED: cytochrome b-c1 complex subunit 8-like [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 6.4e-31
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQK MSGLWNDL+GKIHHKISENWISA LLITPVVG+YTY Q
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60

Query: 61 QYKENEKLSHRY 73
          QYKE EKLSHRY
Sbjct: 61 QYKEKEKLSHRY 72

BLAST of CmoCh05G000230 vs. NCBI nr
Match: gi|449450456|ref|XP_004142978.1| (PREDICTED: cytochrome b-c1 complex subunit 8-like [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 8.3e-31
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK MSGLWNDL+GKIHHKISENWISA LLITPVVG+YTY Q
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60

Query: 61 QYKENEKLSHRY 73
          QYKE EKLSHRY
Sbjct: 61 QYKEKEKLSHRY 72

BLAST of CmoCh05G000230 vs. NCBI nr
Match: gi|700207176|gb|KGN62295.1| (hypothetical protein Csa_2G348820 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-30
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK MSGLWNDL+GKIHHKISENWISA LLITPVVG+YTY Q
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60

Query: 61 QYKENEKLSHR 72
          QYKE EKLSHR
Sbjct: 61 QYKEKEKLSHR 71

BLAST of CmoCh05G000230 vs. NCBI nr
Match: gi|702425310|ref|XP_010067635.1| (PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis])

HSP 1 Score: 131.3 bits (329), Expect = 6.6e-28
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK M+GLW DL GKIHHKISENWISATLL+ P+VGTYTY Q
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWKDLPGKIHHKISENWISATLLLAPLVGTYTYVQ 60

Query: 61 QYKENEKLSHRY 73
           Y+E EKL HRY
Sbjct: 61 NYQEKEKLEHRY 72

BLAST of CmoCh05G000230 vs. NCBI nr
Match: gi|695075718|ref|XP_009385107.1| (PREDICTED: cytochrome b-c1 complex subunit 8-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-27
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 1

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60
          MGK PVRMKAV+YALSPFQQK M GLW DL GKIHHK+SENW+SATLL+TPV GTY+YAQ
Sbjct: 1  MGKTPVRMKAVVYALSPFQQKVMPGLWKDLPGKIHHKVSENWLSATLLLTPVFGTYSYAQ 60

Query: 61 QYKENEKLSHRY 73
           YKE EKL HRY
Sbjct: 61 YYKEEEKLEHRY 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
QCR8_SOLTU2.5e-2773.61Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0LK55_CUCSA2.9e-3090.14Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348820 PE=4 SV=1[more]
A0A059BJE6_EUCGR4.6e-2881.94Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03166 PE=4 SV=1[more]
W9RCV1_9ROSA2.3e-2781.69Uncharacterized protein OS=Morus notabilis GN=L484_027750 PE=4 SV=1[more]
C5Z5C6_SORBI2.3e-2780.56Putative uncharacterized protein Sb10g005110 OS=Sorghum bicolor GN=Sb10g005110 P... [more]
I1H0J1_BRADI3.0e-2780.56Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G10860.19.8e-3077.78 Cytochrome b-c1 complex, subunit 8 protein[more]
AT5G05370.12.4e-2873.61 Cytochrome b-c1 complex, subunit 8 protein[more]
Match NameE-valueIdentityDescription
gi|659087225|ref|XP_008444338.1|6.4e-3191.67PREDICTED: cytochrome b-c1 complex subunit 8-like [Cucumis melo][more]
gi|449450456|ref|XP_004142978.1|8.3e-3190.28PREDICTED: cytochrome b-c1 complex subunit 8-like [Cucumis sativus][more]
gi|700207176|gb|KGN62295.1|4.1e-3090.14hypothetical protein Csa_2G348820 [Cucumis sativus][more]
gi|702425310|ref|XP_010067635.1|6.6e-2881.94PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis][more]
gi|695075718|ref|XP_009385107.1|1.9e-2780.56PREDICTED: cytochrome b-c1 complex subunit 8-like [Musa acuminata subsp. malacce... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004205Cytochrome b-c1 complex subunit 8
IPR020101Cyt_b-c1_8-plants
Vocabulary: Molecular Function
TermDefinition
GO:0008121ubiquinol-cytochrome-c reductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO:0070469respiratory chain
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0015992 proton transport
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0070469 respiratory chain
cellular_component GO:0045275 respiratory chain complex III
molecular_function GO:0008121 ubiquinol-cytochrome-c reductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G000230.1CmoCh05G000230.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004205Cytochrome b-c1 complex subunit 8GENE3DG3DSA:1.20.5.210coord: 8..68
score: 1.
IPR004205Cytochrome b-c1 complex subunit 8unknownSSF81508Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 10..66
score: 5.3
IPR020101Cytochrome b-c1 complex subunit 8, plantsPRODOMPD056240coord: 2..72
score: 9.0
IPR020101Cytochrome b-c1 complex subunit 8, plantsPFAMPF10890DUF2741coord: 1..72
score: 1.7
NoneNo IPR availablePANTHERPTHR34559FAMILY NOT NAMEDcoord: 2..72
score: 1.6
NoneNo IPR availablePANTHERPTHR34559:SF1SUBFAMILY NOT NAMEDcoord: 2..72
score: 1.6

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh05G000230CmoCh12G000120Cucurbita moschata (Rifu)cmocmoB152