Cucsa.340900 (gene) Cucumber (Gy14) v1

NameCucsa.340900
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold03356 : 3274681 .. 3275474 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCAGCGTGACCTTGTGCTGAATTGTAAATGTGAGTTGCTCTCAAGATTAACACCTTTTAAAAAGTGTGTATTTGTTGGAGTGAAGAATGAAACCAAAAAACATCTTGCTAAAAAAATCAAAAGTTTGAAAAGATCAAAGAAGAACTTCTAACACCACAATCTTTTTTCTCAAATATATATATATAAAAAAAAAGAATAACAGTTTTAGATCTGAATTTAATTTTAGATCTATAACCGTCAATGTATTAAAACATTAGTATTATTAACCATAAAAGGGCTACAATATTTGTAACCATGAAAATAACAATAATTGTCATATTTTCTATGGAAACATTTCATTTCCAACATTTAACTTTGAACACAAAAGTAAATGTACATGGACAAAGTTTCTTTTATTAGTAAAAGAAAGCGAATTTAAAAGTTTAGAATCTAAATCGTATTTGAATCTAAATGCATGATCGGAACAGTTTTTTAGTTATTGAGTCTGACTGTGATGTGTGGTATATACAAATTATGGTTCCACCATTTATTTCAGGGGAGCAAATCATCAATATCGGAAATACATACGGGTGGACTTTTAGGGAGAATTTTTTTGGAACAACATTGTTTTGGTGCAGCTTTCAAAGCAAAGAAAAACATGCAACATTTGAAGTCTTTTGGCCAGAGTCAGAATCATGGCTTGCAGATCATTGCACAGCTTCAAATTGCATTTGGAAAGCTAAAGATAAGGGTTTCTACTTGTTTAATGGATATAACAAGAAATTTGAGTTCATTCATCCATGGGAATCCTAG

mRNA sequence

ATCCAGCGTGACCTTGTGCTGAATTGTAAATGGGAGCAAATCATCAATATCGGAAATACATACGGGTGGACTTTTAGGGAGAATTTTTTTGGAACAACATTGTTTTGGTGCAGCTTTCAAAGCAAAGAAAAACATGCAACATTTGAAGTCTTTTGGCCAGAGTCAGAATCATGGCTTGCAGATCATTGCACAGCTTCAAATTGCATTTGGAAAGCTAAAGATAAGGGTTTCTACTTGTTTAATGGATATAACAAGAAATTTGAGTTCATTCATCCATGGGAATCCTAG

Coding sequence (CDS)

ATCCAGCGTGACCTTGTGCTGAATTGTAAATGGGAGCAAATCATCAATATCGGAAATACATACGGGTGGACTTTTAGGGAGAATTTTTTTGGAACAACATTGTTTTGGTGCAGCTTTCAAAGCAAAGAAAAACATGCAACATTTGAAGTCTTTTGGCCAGAGTCAGAATCATGGCTTGCAGATCATTGCACAGCTTCAAATTGCATTTGGAAAGCTAAAGATAAGGGTTTCTACTTGTTTAATGGATATAACAAGAAATTTGAGTTCATTCATCCATGGGAATCCTAG

Protein sequence

IQRDLVLNCKWEQIINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESESWLADHCTASNCIWKAKDKGFYLFNGYNKKFEFIHPWES*
BLAST of Cucsa.340900 vs. TrEMBL
Match: A0A0A0KA40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G007430 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-18
Identity = 47/101 (46.53%), Postives = 58/101 (57.43%), Query Frame = 1

Query: 1   IQRDLVLNCKWEQ-------IINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWP 60
           I   L ++CK +        I N G  Y W F+EN+  TT +WC FQSK  HA+FEVFWP
Sbjct: 47  INASLQVHCKSKDDDLGVHVIQNEGEHYSWGFKENWLQTTKYWCDFQSKLGHASFEVFWP 106

Query: 61  ESESWLADHC-TASNCIWKAKDKGFYLFNGYNKKFEFIHPW 94
           E  +W +D C + SNC+W A   GF L N   K  EF HPW
Sbjct: 107 ERGTWFSDRCGSNSNCVWVAAHDGFSLLNAPAKTLEFQHPW 147

BLAST of Cucsa.340900 vs. TrEMBL
Match: M5VWE5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.9e-15
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1

Query: 18  GNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESE-SWLADHCTASNCIWKAKDKG 77
           G  + W+F+ENFFGTTL+WC   + +KHA  +VFW E + SWL   C   +CIW AKD G
Sbjct: 52  GTEFNWSFKENFFGTTLYWCYMSTDQKHAALDVFWVEGDHSWLQYRCNWKDCIWIAKDDG 111

Query: 78  FYLFNGYNKKFEFIHPWE 95
            Y+      + EF H WE
Sbjct: 112 IYIKIIPENRDEFSHKWE 129

BLAST of Cucsa.340900 vs. TrEMBL
Match: M5VN50_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024219mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.8e-15
Identity = 38/80 (47.50%), Postives = 46/80 (57.50%), Query Frame = 1

Query: 18  GNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESE---SWLADHCTASNCIWKAKD 77
           GN + W F+ENF GTTLFWC+  +  +HA F+VFW E E   SWL   C    C W AKD
Sbjct: 26  GNEFNWGFKENFGGTTLFWCNIHNNHQHANFQVFWHEDESKSSWLHYRCNWKECFWVAKD 85

Query: 78  KGFYLFNGYNKKFEFIHPWE 95
            G Y+ N    + E  H WE
Sbjct: 86  DGIYIRNTPEGRDELQHQWE 105

BLAST of Cucsa.340900 vs. TrEMBL
Match: A0A061DNM1_THECC (S-protein, putative OS=Theobroma cacao GN=TCM_003116 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-10
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1

Query: 3   RDLVLNCKWE------QIINIGNTYGWTFRENFFGTTLFWCSFQSKE--KHATFEVFWPE 62
           R L L+CK +      Q ++ G ++ W+FR+N FG TLFWC + SK+   HA F+VFW  
Sbjct: 56  RTLFLHCKSKDDDLGIQNLSPGTSFTWSFRQNLFGRTLFWC-YMSKDGNAHAAFKVFW-- 115

Query: 63  SESWLADHCTASNCIWKAKDKGFYLFNGYNKKFEFIHPWE 95
            ++ L   C   NCIW AKD G Y+ +      E+   W+
Sbjct: 116 QDALLFHKCLWKNCIWTAKDDGIYIKDLARDSDEYRGQWQ 152

BLAST of Cucsa.340900 vs. TrEMBL
Match: A0A061DVJ1_THECC (S-protein, putative OS=Theobroma cacao GN=TCM_003118 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-10
Identity = 33/80 (41.25%), Postives = 41/80 (51.25%), Query Frame = 1

Query: 15  INIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESESWLADHCTASNCIWKAKD 74
           +  G  + W F+    G TLFWC       HA+F+VFW +++  L   C   NCIW AKD
Sbjct: 73  LTAGTEFNWKFKPQILGKTLFWCYMAWGNVHASFKVFWDDND--LFYRCNWKNCIWTAKD 132

Query: 75  KGFYLFNGYNKKFEFIHPWE 95
            G YL N      EF H WE
Sbjct: 133 DGVYLKNIPENYDEFRHKWE 150

BLAST of Cucsa.340900 vs. TAIR10
Match: AT4G16195.1 (AT4G16195.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-09
Identity = 27/98 (27.55%), Postives = 51/98 (52.04%), Query Frame = 1

Query: 2   QRDLVLNCKWE------QIINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPES 61
           Q  L+ +CK +      + +  G ++ ++F   FFG TL++CSF    +  +F+++    
Sbjct: 59  QLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESHSFDIYKDHR 118

Query: 62  ESWLADHCTASNCIWKAKDKGFYLFNGYNKKFEFIHPW 94
           +S   + C +  C+WK +  G   FN   K+F+  +PW
Sbjct: 119 DSGGDNKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

BLAST of Cucsa.340900 vs. TAIR10
Match: AT4G29035.1 (AT4G29035.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-09
Identity = 26/75 (34.67%), Postives = 36/75 (48.00%), Query Frame = 1

Query: 21  YGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESESWLADHCTASNCIWKAKDKGFYLF 80
           + W F EN   +TLFWC     + H   +VFW   +  L   C   NC+W AK+ G YL+
Sbjct: 77  FSWNFGENMLHSTLFWCYMSKDDGHMNVKVFW--DDVILFHRCDWKNCVWTAKNDGLYLW 136

Query: 81  NGYNKKFEFIHPWES 96
           N    +      W+S
Sbjct: 137 NSAIGEDVLSEKWKS 149

BLAST of Cucsa.340900 vs. NCBI nr
Match: gi|659093660|ref|XP_008447647.1| (PREDICTED: uncharacterized protein LOC103490054 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 57/99 (57.58%), Postives = 70/99 (70.71%), Query Frame = 1

Query: 5   LVLNCK------WEQIINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPE--SE 64
           L+++CK       E II++G  Y W FRENF GTTLFWC+F++K KHATFEVFW E  S+
Sbjct: 14  LLVHCKSKDDDLGEHIIDMGKEYEWKFRENFSGTTLFWCNFRNKHKHATFEVFWRESRSK 73

Query: 65  SWLADHCTASNCIWKAKDKGFYLFNGYNKKFEFIHPWES 96
           SWL DHC  SNC+W  K  GFYL++    KFEFIH W+S
Sbjct: 74  SWLEDHCKDSNCLWTVKSTGFYLYDSSQNKFEFIHEWKS 112

BLAST of Cucsa.340900 vs. NCBI nr
Match: gi|659117571|ref|XP_008458671.1| (PREDICTED: uncharacterized protein LOC103498000 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 1

Query: 1   IQRDLVLNCKWEQ-------IINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWP 60
           I   L ++CK +        I N G  Y W F+EN+  TT FWC+FQS+  HA+FEVFWP
Sbjct: 47  INASLEVHCKSKDDDLGVHVIQNEGERYSWGFKENWLQTTKFWCNFQSRLGHASFEVFWP 106

Query: 61  ESESWLADHCTASNCIWKAKDKGFYLFNGYNKKFEFIHPW 94
           E+ +WL+D C+ SNC+W A + GF L NG  K  EF HPW
Sbjct: 107 ETGTWLSDRCSNSNCVWVASNDGFSLLNGPAKTLEFQHPW 146

BLAST of Cucsa.340900 vs. NCBI nr
Match: gi|659125766|ref|XP_008462850.1| (PREDICTED: uncharacterized protein LOC103501130 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-19
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 1

Query: 13  QIINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESESWLADHCTASNCIWKA 72
           QII+I   Y WTF+ENF+ TTLFWC F S   HA+F+VFWPE   WL   C   NC W A
Sbjct: 66  QIIDINGQYSWTFKENFWQTTLFWCDFSSLNGHASFQVFWPEKGDWLEYRCDHGNCTWAA 125

Query: 73  KDKGFYLFNGYNKKFEFIHPWES 96
            + GF+L N    +FE +H W++
Sbjct: 126 TNDGFFLANIPEGRFELMHYWQN 148

BLAST of Cucsa.340900 vs. NCBI nr
Match: gi|778689033|ref|XP_004136434.2| (PREDICTED: uncharacterized protein LOC101208376 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 8.2e-18
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 1

Query: 5   LVLNCKWE------QIINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESESW 64
           L L CK +      Q + +   + W+F+EN + TTL+WC   + E HA+F VFWPE   W
Sbjct: 46  LFLQCKSKDDDLGAQNLGVKQQFSWSFKENLWQTTLYWCYMHNAESHASFNVFWPEKSGW 105

Query: 65  LADHCTASNCIWKAKDKGFYLFNGYNKKFEFIHPWE 95
           LA  C   NCIW A+D G YL    +  FE IH WE
Sbjct: 106 LAFRCQLRNCIWSARDDGIYLKTNPHNTFELIHTWE 141

BLAST of Cucsa.340900 vs. NCBI nr
Match: gi|778709234|ref|XP_011656368.1| (PREDICTED: uncharacterized protein LOC105435729 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 8.2e-18
Identity = 47/101 (46.53%), Postives = 58/101 (57.43%), Query Frame = 1

Query: 1   IQRDLVLNCKWEQ-------IINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWP 60
           I   L ++CK +        I N G  Y W F+EN+  TT +WC FQSK  HA+FEVFWP
Sbjct: 47  INASLQVHCKSKDDDLGVHVIQNEGEHYSWGFKENWLQTTKYWCDFQSKLGHASFEVFWP 106

Query: 61  ESESWLADHC-TASNCIWKAKDKGFYLFNGYNKKFEFIHPW 94
           E  +W +D C + SNC+W A   GF L N   K  EF HPW
Sbjct: 107 ERGTWFSDRCGSNSNCVWVAAHDGFSLLNAPAKTLEFQHPW 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KA40_CUCSA5.7e-1846.53Uncharacterized protein OS=Cucumis sativus GN=Csa_6G007430 PE=4 SV=1[more]
M5VWE5_PRUPE5.9e-1547.44Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 S... [more]
M5VN50_PRUPE7.8e-1547.50Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024219mg PE=4 SV=1[more]
A0A061DNM1_THECC3.4e-1039.00S-protein, putative OS=Theobroma cacao GN=TCM_003116 PE=4 SV=1[more]
A0A061DVJ1_THECC5.8e-1041.25S-protein, putative OS=Theobroma cacao GN=TCM_003118 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G16195.11.1e-0927.55 Plant self-incompatibility protein S1 family[more]
AT4G29035.12.0e-0934.67 Plant self-incompatibility protein S1 family[more]
Match NameE-valueIdentityDescription
gi|659093660|ref|XP_008447647.1|1.3e-2657.58PREDICTED: uncharacterized protein LOC103490054 [Cucumis melo][more]
gi|659117571|ref|XP_008458671.1|3.6e-2149.00PREDICTED: uncharacterized protein LOC103498000 [Cucumis melo][more]
gi|659125766|ref|XP_008462850.1|5.7e-1950.60PREDICTED: uncharacterized protein LOC103501130 [Cucumis melo][more]
gi|778689033|ref|XP_004136434.2|8.2e-1843.75PREDICTED: uncharacterized protein LOC101208376 [Cucumis sativus][more]
gi|778709234|ref|XP_011656368.1|8.2e-1846.53PREDICTED: uncharacterized protein LOC105435729 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.340900.1Cucsa.340900.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 12..93
score: 9.1
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 12..94
score: 3.9
NoneNo IPR availablePANTHERPTHR31232:SF2GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MDJ14-RELATEDcoord: 12..94
score: 3.9

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.340900Cucumber (Gy14) v1cgycgyB147
Cucsa.340900Cucurbita maxima (Rimu)cgycmaB0927
Cucsa.340900Cucurbita maxima (Rimu)cgycmaB0933
Cucsa.340900Cucurbita maxima (Rimu)cgycmaB0935
Cucsa.340900Cucurbita maxima (Rimu)cgycmaB0946
Cucsa.340900Cucurbita moschata (Rifu)cgycmoB0927
Cucsa.340900Cucurbita moschata (Rifu)cgycmoB0933
Cucsa.340900Cucurbita moschata (Rifu)cgycmoB0935
Cucsa.340900Cucurbita moschata (Rifu)cgycmoB0946
Cucsa.340900Wild cucumber (PI 183967)cgycpiB504
Cucsa.340900Wild cucumber (PI 183967)cgycpiB511
Cucsa.340900Cucumber (Chinese Long) v2cgycuB478
Cucsa.340900Cucumber (Chinese Long) v2cgycuB485
Cucsa.340900Melon (DHL92) v3.5.1cgymeB553
Cucsa.340900Melon (DHL92) v3.5.1cgymeB556
Cucsa.340900Melon (DHL92) v3.5.1cgymeB560
Cucsa.340900Watermelon (Charleston Gray)cgywcgB578
Cucsa.340900Watermelon (Charleston Gray)cgywcgB589
Cucsa.340900Watermelon (97103) v1cgywmB608
Cucsa.340900Watermelon (97103) v1cgywmB611
Cucsa.340900Cucurbita pepo (Zucchini)cgycpeB0878
Cucsa.340900Cucurbita pepo (Zucchini)cgycpeB0882
Cucsa.340900Cucurbita pepo (Zucchini)cgycpeB0886
Cucsa.340900Cucurbita pepo (Zucchini)cgycpeB0889
Cucsa.340900Bottle gourd (USVL1VR-Ls)cgylsiB548
Cucsa.340900Bottle gourd (USVL1VR-Ls)cgylsiB556
Cucsa.340900Melon (DHL92) v3.6.1cgymedB554
Cucsa.340900Melon (DHL92) v3.6.1cgymedB557
Cucsa.340900Melon (DHL92) v3.6.1cgymedB561
Cucsa.340900Silver-seed gourdcarcgyB0144
Cucsa.340900Silver-seed gourdcarcgyB0246
Cucsa.340900Cucumber (Chinese Long) v3cgycucB523
Cucsa.340900Cucumber (Chinese Long) v3cgycucB528
Cucsa.340900Watermelon (97103) v2cgywmbB589
Cucsa.340900Watermelon (97103) v2cgywmbB592
Cucsa.340900Wax gourdcgywgoB681
Cucsa.340900Wax gourdcgywgoB691