Cucsa.340900.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.340900.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold03356 : 3274681 .. 3275474 (-)
Sequence length	288

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCAGCGTGACCTTGTGCTGAATTGTAAATGTGAGTTGCTCTCAAGATTAACACCTTTTAAAAAGTGTGTATTTGTTGGAGTGAAGAATGAAACCAAAAAACATCTTGCTAAAAAAATCAAAAGTTTGAAAAGATCAAAGAAGAACTTCTAACACCACAATCTTTTTTCTCAAATATATATATATAAAAAAAAAGAATAACAGTTTTAGATCTGAATTTAATTTTAGATCTATAACCGTCAATGTATTAAAACATTAGTATTATTAACCATAAAAGGGCTACAATATTTGTAACCATGAAAATAACAATAATTGTCATATTTTCTATGGAAACATTTCATTTCCAACATTTAACTTTGAACACAAAAGTAAATGTACATGGACAAAGTTTCTTTTATTAGTAAAAGAAAGCGAATTTAAAAGTTTAGAATCTAAATCGTATTTGAATCTAAATGCATGATCGGAACAGTTTTTTAGTTATTGAGTCTGACTGTGATGTGTGGTATATACAAATTATGGTTCCACCATTTATTTCAGGGGAGCAAATCATCAATATCGGAAATACATACGGGTGGACTTTTAGGGAGAATTTTTTTGGAACAACATTGTTTTGGTGCAGCTTTCAAAGCAAAGAAAAACATGCAACATTTGAAGTCTTTTGGCCAGAGTCAGAATCATGGCTTGCAGATCATTGCACAGCTTCAAATTGCATTTGGAAAGCTAAAGATAAGGGTTTCTACTTGTTTAATGGATATAACAAGAAATTTGAGTTCATTCATCCATGGGAATCCTAG

mRNA sequence

ATCCAGCGTGACCTTGTGCTGAATTGTAAATGGGAGCAAATCATCAATATCGGAAATACATACGGGTGGACTTTTAGGGAGAATTTTTTTGGAACAACATTGTTTTGGTGCAGCTTTCAAAGCAAAGAAAAACATGCAACATTTGAAGTCTTTTGGCCAGAGTCAGAATCATGGCTTGCAGATCATTGCACAGCTTCAAATTGCATTTGGAAAGCTAAAGATAAGGGTTTCTACTTGTTTAATGGATATAACAAGAAATTTGAGTTCATTCATCCATGGGAATCCTAG

Coding sequence (CDS)

ATCCAGCGTGACCTTGTGCTGAATTGTAAATGGGAGCAAATCATCAATATCGGAAATACATACGGGTGGACTTTTAGGGAGAATTTTTTTGGAACAACATTGTTTTGGTGCAGCTTTCAAAGCAAAGAAAAACATGCAACATTTGAAGTCTTTTGGCCAGAGTCAGAATCATGGCTTGCAGATCATTGCACAGCTTCAAATTGCATTTGGAAAGCTAAAGATAAGGGTTTCTACTTGTTTAATGGATATAACAAGAAATTTGAGTTCATTCATCCATGGGAATCCTAG

Protein sequence

IQRDLVLNCKWEQIINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESESWLADHCTASNCIWKAKDKGFYLFNGYNKKFEFIHPWES*

Homology

[Close]

BLAST of Cucsa.340900.1 vs. TrEMBL
Match: A0A0A0KA40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G007430 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-18
Identity = 47/101 (46.53%), Postives = 58/101 (57.43%), Query Frame = 1


Query: 1   IQRDLVLNCKWEQ-------IINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWP 60
           I   L ++CK +        I N G  Y W F+EN+  TT +WC FQSK  HA+FEVFWP
Sbjct: 47  INASLQVHCKSKDDDLGVHVIQNEGEHYSWGFKENWLQTTKYWCDFQSKLGHASFEVFWP 106

Query: 61  ESESWLADHC-TASNCIWKAKDKGFYLFNGYNKKFEFIHPW 94
           E  +W +D C + SNC+W A   GF L N   K  EF HPW
Sbjct: 107 ERGTWFSDRCGSNSNCVWVAAHDGFSLLNAPAKTLEFQHPW 147

[Close]

BLAST of Cucsa.340900.1 vs. TrEMBL
Match: M5VWE5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.9e-15
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 18  GNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESE-SWLADHCTASNCIWKAKDKG 77
           G  + W+F+ENFFGTTL+WC   + +KHA  +VFW E + SWL   C   +CIW AKD G
Sbjct: 52  GTEFNWSFKENFFGTTLYWCYMSTDQKHAALDVFWVEGDHSWLQYRCNWKDCIWIAKDDG 111

Query: 78  FYLFNGYNKKFEFIHPWE 95
            Y+      + EF H WE
Sbjct: 112 IYIKIIPENRDEFSHKWE 129

[Close]

BLAST of Cucsa.340900.1 vs. TrEMBL
Match: M5VN50_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024219mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.8e-15
Identity = 38/80 (47.50%), Postives = 46/80 (57.50%), Query Frame = 1


Query: 18  GNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESE---SWLADHCTASNCIWKAKD 77
           GN + W F+ENF GTTLFWC+  +  +HA F+VFW E E   SWL   C    C W AKD
Sbjct: 26  GNEFNWGFKENFGGTTLFWCNIHNNHQHANFQVFWHEDESKSSWLHYRCNWKECFWVAKD 85

Query: 78  KGFYLFNGYNKKFEFIHPWE 95
            G Y+ N    + E  H WE
Sbjct: 86  DGIYIRNTPEGRDELQHQWE 105

[Close]

BLAST of Cucsa.340900.1 vs. TrEMBL
Match: A0A061DNM1_THECC (S-protein, putative OS=Theobroma cacao GN=TCM_003116 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-10
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1


Query: 3   RDLVLNCKWE------QIINIGNTYGWTFRENFFGTTLFWCSFQSKE--KHATFEVFWPE 62
           R L L+CK +      Q ++ G ++ W+FR+N FG TLFWC + SK+   HA F+VFW  
Sbjct: 56  RTLFLHCKSKDDDLGIQNLSPGTSFTWSFRQNLFGRTLFWC-YMSKDGNAHAAFKVFW-- 115

Query: 63  SESWLADHCTASNCIWKAKDKGFYLFNGYNKKFEFIHPWE 95
            ++ L   C   NCIW AKD G Y+ +      E+   W+
Sbjct: 116 QDALLFHKCLWKNCIWTAKDDGIYIKDLARDSDEYRGQWQ 152

[Close]

BLAST of Cucsa.340900.1 vs. TrEMBL
Match: A0A061DVJ1_THECC (S-protein, putative OS=Theobroma cacao GN=TCM_003118 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-10
Identity = 33/80 (41.25%), Postives = 41/80 (51.25%), Query Frame = 1


Query: 15  INIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESESWLADHCTASNCIWKAKD 74
           +  G  + W F+    G TLFWC       HA+F+VFW +++  L   C   NCIW AKD
Sbjct: 73  LTAGTEFNWKFKPQILGKTLFWCYMAWGNVHASFKVFWDDND--LFYRCNWKNCIWTAKD 132

Query: 75  KGFYLFNGYNKKFEFIHPWE 95
            G YL N      EF H WE
Sbjct: 133 DGVYLKNIPENYDEFRHKWE 150

[Close]

BLAST of Cucsa.340900.1 vs. TAIR10
Match: AT4G16195.1 (AT4G16195.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-09
Identity = 27/98 (27.55%), Postives = 51/98 (52.04%), Query Frame = 1


Query: 2   QRDLVLNCKWE------QIINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPES 61
           Q  L+ +CK +      + +  G ++ ++F   FFG TL++CSF    +  +F+++    
Sbjct: 59  QLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESHSFDIYKDHR 118

Query: 62  ESWLADHCTASNCIWKAKDKGFYLFNGYNKKFEFIHPW 94
           +S   + C +  C+WK +  G   FN   K+F+  +PW
Sbjct: 119 DSGGDNKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

[Close]

BLAST of Cucsa.340900.1 vs. TAIR10
Match: AT4G29035.1 (AT4G29035.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-09
Identity = 26/75 (34.67%), Postives = 36/75 (48.00%), Query Frame = 1


Query: 21  YGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESESWLADHCTASNCIWKAKDKGFYLF 80
           + W F EN   +TLFWC     + H   +VFW   +  L   C   NC+W AK+ G YL+
Sbjct: 77  FSWNFGENMLHSTLFWCYMSKDDGHMNVKVFW--DDVILFHRCDWKNCVWTAKNDGLYLW 136

Query: 81  NGYNKKFEFIHPWES 96
           N    +      W+S
Sbjct: 137 NSAIGEDVLSEKWKS 149

[Close]

BLAST of Cucsa.340900.1 vs. NCBI nr
Match: gi|659093660|ref|XP_008447647.1| (PREDICTED: uncharacterized protein LOC103490054 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 57/99 (57.58%), Postives = 70/99 (70.71%), Query Frame = 1


Query: 5   LVLNCK------WEQIINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPE--SE 64
           L+++CK       E II++G  Y W FRENF GTTLFWC+F++K KHATFEVFW E  S+
Sbjct: 14  LLVHCKSKDDDLGEHIIDMGKEYEWKFRENFSGTTLFWCNFRNKHKHATFEVFWRESRSK 73

Query: 65  SWLADHCTASNCIWKAKDKGFYLFNGYNKKFEFIHPWES 96
           SWL DHC  SNC+W  K  GFYL++    KFEFIH W+S
Sbjct: 74  SWLEDHCKDSNCLWTVKSTGFYLYDSSQNKFEFIHEWKS 112

[Close]

BLAST of Cucsa.340900.1 vs. NCBI nr
Match: gi|659117571|ref|XP_008458671.1| (PREDICTED: uncharacterized protein LOC103498000 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 1


Query: 1   IQRDLVLNCKWEQ-------IINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWP 60
           I   L ++CK +        I N G  Y W F+EN+  TT FWC+FQS+  HA+FEVFWP
Sbjct: 47  INASLEVHCKSKDDDLGVHVIQNEGERYSWGFKENWLQTTKFWCNFQSRLGHASFEVFWP 106

Query: 61  ESESWLADHCTASNCIWKAKDKGFYLFNGYNKKFEFIHPW 94
           E+ +WL+D C+ SNC+W A + GF L NG  K  EF HPW
Sbjct: 107 ETGTWLSDRCSNSNCVWVASNDGFSLLNGPAKTLEFQHPW 146

[Close]

BLAST of Cucsa.340900.1 vs. NCBI nr
Match: gi|659125766|ref|XP_008462850.1| (PREDICTED: uncharacterized protein LOC103501130 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-19
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 13  QIINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESESWLADHCTASNCIWKA 72
           QII+I   Y WTF+ENF+ TTLFWC F S   HA+F+VFWPE   WL   C   NC W A
Sbjct: 66  QIIDINGQYSWTFKENFWQTTLFWCDFSSLNGHASFQVFWPEKGDWLEYRCDHGNCTWAA 125

Query: 73  KDKGFYLFNGYNKKFEFIHPWES 96
            + GF+L N    +FE +H W++
Sbjct: 126 TNDGFFLANIPEGRFELMHYWQN 148

[Close]

BLAST of Cucsa.340900.1 vs. NCBI nr
Match: gi|778689033|ref|XP_004136434.2| (PREDICTED: uncharacterized protein LOC101208376 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 8.2e-18
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 1


Query: 5   LVLNCKWE------QIINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWPESESW 64
           L L CK +      Q + +   + W+F+EN + TTL+WC   + E HA+F VFWPE   W
Sbjct: 46  LFLQCKSKDDDLGAQNLGVKQQFSWSFKENLWQTTLYWCYMHNAESHASFNVFWPEKSGW 105

Query: 65  LADHCTASNCIWKAKDKGFYLFNGYNKKFEFIHPWE 95
           LA  C   NCIW A+D G YL    +  FE IH WE
Sbjct: 106 LAFRCQLRNCIWSARDDGIYLKTNPHNTFELIHTWE 141

[Close]

BLAST of Cucsa.340900.1 vs. NCBI nr
Match: gi|778709234|ref|XP_011656368.1| (PREDICTED: uncharacterized protein LOC105435729 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 8.2e-18
Identity = 47/101 (46.53%), Postives = 58/101 (57.43%), Query Frame = 1


Query: 1   IQRDLVLNCKWEQ-------IINIGNTYGWTFRENFFGTTLFWCSFQSKEKHATFEVFWP 60
           I   L ++CK +        I N G  Y W F+EN+  TT +WC FQSK  HA+FEVFWP
Sbjct: 47  INASLQVHCKSKDDDLGVHVIQNEGEHYSWGFKENWLQTTKYWCDFQSKLGHASFEVFWP 106

Query: 61  ESESWLADHC-TASNCIWKAKDKGFYLFNGYNKKFEFIHPW 94
           E  +W +D C + SNC+W A   GF L N   K  EF HPW
Sbjct: 107 ERGTWFSDRCGSNSNCVWVAAHDGFSLLNAPAKTLEFQHPW 147

The following BLAST results are available for this feature:

BLAST of Cucsa.340900.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA40_CUCSA	5.7e-18	46.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G007430 PE=4 SV=1	[more]
M5VWE5_PRUPE	5.9e-15	47.44	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 S...	[more]
M5VN50_PRUPE	7.8e-15	47.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024219mg PE=4 SV=1	[more]
A0A061DNM1_THECC	3.4e-10	39.00	S-protein, putative OS=Theobroma cacao GN=TCM_003116 PE=4 SV=1	[more]
A0A061DVJ1_THECC	5.8e-10	41.25	S-protein, putative OS=Theobroma cacao GN=TCM_003118 PE=4 SV=1	[more]

BLAST of Cucsa.340900.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16195.1	1.1e-09	27.55	Plant self-incompatibility protein S1 family	[more]
AT4G29035.1	2.0e-09	34.67	Plant self-incompatibility protein S1 family	[more]

BLAST of Cucsa.340900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093660\|ref\|XP_008447647.1\|	1.3e-26	57.58	PREDICTED: uncharacterized protein LOC103490054 [Cucumis melo]	[more]
gi\|659117571\|ref\|XP_008458671.1\|	3.6e-21	49.00	PREDICTED: uncharacterized protein LOC103498000 [Cucumis melo]	[more]
gi\|659125766\|ref\|XP_008462850.1\|	5.7e-19	50.60	PREDICTED: uncharacterized protein LOC103501130 [Cucumis melo]	[more]
gi\|778689033\|ref\|XP_004136434.2\|	8.2e-18	43.75	PREDICTED: uncharacterized protein LOC101208376 [Cucumis sativus]	[more]
gi\|778709234\|ref\|XP_011656368.1\|	8.2e-18	46.53	PREDICTED: uncharacterized protein LOC105435729 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.340900	Cucsa.340900	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.340900.1	Cucsa.340900.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.340900.1.CDS.2	Cucsa.340900.1.CDS.2	CDS
Cucsa.340900.1.CDS.1	Cucsa.340900.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 12..93 score: 9.1
None	No IPR available	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 12..94 score: 3.9
None	No IPR available	PANTHER	PTHR31232:SF2	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MDJ14-RELATED	coord: 12..94 score: 3.9