Cucsa.250560 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.250560
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionLOB domain protein
Locationscaffold02219 : 662733 .. 662987 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCGTCAAATTCATCATGTGCGGCGTGCAAATTCCGTCGGCAAAAATGCACACAAGAATGCATGTTTGCACCATATTTCCCACCAGATCATCTTCCACAAAAATTCTCCAACGTCCACAATGTTTTTGGTGCAACGACCAATGTCGCTGAACTTCTAAACCAACTCAGCGTCATGACGCCAATTTCCTTAGCCTACAAAGCTGACTTCCGTTTACGTGACCCCATCTTTACAATGCTAGAAAAGAATTAG

mRNA sequence

ATGTCATCGTCAAATTCATCATGTGCGGCGTGCAAATTCCGTCGGCAAAAATGCACACAAGAATGCATGTTTGCACCATATTTCCCACCAGATCATCTTCCACAAAAATTCTCCAACGTCCACAATGTTTTTGGTGCAACGACCAATGTCGCTGAACTTCTAAACCAACTCAGCGTCATGACGCCAATTTCCTTAGCCTACAAAGCTGACTTCCGTTTACGTGACCCCATCTTTACAATGCTAGAAAAGAATTAG

Coding sequence (CDS)

ATGTCATCGTCAAATTCATCATGTGCGGCGTGCAAATTCCGTCGGCAAAAATGCACACAAGAATGCATGTTTGCACCATATTTCCCACCAGATCATCTTCCACAAAAATTCTCCAACGTCCACAATGTTTTTGGTGCAACGACCAATGTCGCTGAACTTCTAAACCAACTCAGCGTCATGACGCCAATTTCCTTAGCCTACAAAGCTGACTTCCGTTTACGTGACCCCATCTTTACAATGCTAGAAAAGAATTAG

Protein sequence

MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVMTPISLAYKADFRLRDPIFTMLEKN*
Homology
[Close]
BLAST of Cucsa.250560 vs. Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-20
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 1 

Query: 2  SSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM- 61
          SS+NS CAACKF R+KC  EC+FAPYFPPD  PQKF+NVH VFGA +NV +LLN+L    
Sbjct: 4  SSTNSPCAACKFLRRKCQPECVFAPYFPPDQ-PQKFANVHKVFGA-SNVTKLLNELHPSQ 63

Query: 62 ---TPISLAYKADFRLRDPIF 79
                SLAY+AD RLRDP++
Sbjct: 64 REDAVNSLAYEADMRLRDPVY 82

[Close]
BLAST of Cucsa.250560 vs. Swiss-Prot
Match: LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.8e-20
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1 

Query: 1  MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM 60
          M+SS+S CAACKF R+KCTQEC+FAPYFPPD  PQKF+ VH VFGA +NVA+LLN+L+  
Sbjct: 1  MASSSSPCAACKFLRRKCTQECVFAPYFPPDQ-PQKFAFVHKVFGA-SNVAKLLNELASN 60

Query: 61 ----TPISLAYKADFRLRDPIF 79
                 SL Y+A+ RLRDP++
Sbjct: 61 QREDAVNSLFYEAEARLRDPVY 80

[Close]
BLAST of Cucsa.250560 vs. Swiss-Prot
Match: LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-17
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 4   SNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM--- 63
           + S CAACKF R+KC  +C+FAPYFPPD+ PQKF +VH VFGA +NV +LLN+L      
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDN-PQKFVHVHRVFGA-SNVTKLLNELHPFQRE 89

Query: 64  -TPISLAYKADFRLRDPIF 79
               SLAY+AD RLRDP++
Sbjct: 90  DAVNSLAYEADMRLRDPVY 106

[Close]
BLAST of Cucsa.250560 vs. Swiss-Prot
Match: LBD6_ORYSJ (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 4   SNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM--- 63
           + S CAACKF R+KC  +C+FAPYFPPD+ PQKF +VH VFGA +NV +LLN+L      
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDN-PQKFVHVHRVFGA-SNVTKLLNELHPYQRE 94

Query: 64  -TPISLAYKADFRLRDPIF 79
               SLAY+AD RLRDP++
Sbjct: 95  DAVNSLAYEADMRLRDPVY 111

[Close]
BLAST of Cucsa.250560 vs. Swiss-Prot
Match: LBD6_ORYSI (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 4   SNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM--- 63
           + S CAACKF R+KC  +C+FAPYFPPD+ PQKF +VH VFGA +NV +LLN+L      
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDN-PQKFVHVHRVFGA-SNVTKLLNELHPYQRE 94

Query: 64  -TPISLAYKADFRLRDPIF 79
               SLAY+AD RLRDP++
Sbjct: 95  DAVNSLAYEADMRLRDPVY 111

[Close]
BLAST of Cucsa.250560 vs. TrEMBL
Match: A0A067KJ76_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12350 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.6e-22
Identity = 57/82 (69.51%), Postives = 66/82 (80.49%), Query Frame = 1 

Query: 1  MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM 60
          MSS NS CAACKFRRQKCTQEC+FAPYFPPD  PQKF+NVH VFGA +NVA+LLN+LS  
Sbjct: 1  MSSPNSPCAACKFRRQKCTQECVFAPYFPPDQ-PQKFANVHGVFGA-SNVAKLLNELSTT 60

Query: 61 ----TPISLAYKADFRLRDPIF 79
                 SLAY+A+ RLRDP++
Sbjct: 61 QREDAVNSLAYEAEARLRDPVY 80

[Close]
BLAST of Cucsa.250560 vs. TrEMBL
Match: A0A0A0LM25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G295940 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.9e-22
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 1  MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM 60
          MSSSNS CAACKF R+KCTQEC+FAPYFPPD  PQKF+NVH VFGA +NVA+LLN+L+  
Sbjct: 1  MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQ-PQKFANVHKVFGA-SNVAKLLNELNAT 60

Query: 61 ----TPISLAYKADFRLRDPIF 79
                 SLAY+A+FRLRDP++
Sbjct: 61 QREDAVNSLAYEAEFRLRDPVY 80

[Close]
BLAST of Cucsa.250560 vs. TrEMBL
Match: A0A166AZW5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010922 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.9e-21
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 1  MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM 60
          MSSSNS CAACKF R+KCTQEC+FAPYFPPD  PQKF+NVH VFGA +NVA+LLN L+  
Sbjct: 1  MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQ-PQKFANVHKVFGA-SNVAKLLNDLNAA 60

Query: 61 ----TPISLAYKADFRLRDPIF 79
                 SLAY+AD RLRDP++
Sbjct: 61 QREDAVNSLAYEADARLRDPVY 80

[Close]
BLAST of Cucsa.250560 vs. TrEMBL
Match: A0A061DMY0_THECC (ASYMMETRIC LEAVES 2-like 1 OS=Theobroma cacao GN=TCM_000560 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.4e-21
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 1  MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM 60
          MSSSNS CAACKF R+KCTQEC+FAPYFPPD+ PQKF+NVH VFGA +NVA+LLN+L+  
Sbjct: 1  MSSSNSPCAACKFLRRKCTQECVFAPYFPPDN-PQKFANVHKVFGA-SNVAKLLNELNAS 60

Query: 61 ----TPISLAYKADFRLRDPIF 79
                 SLAY+A+ RLRDP++
Sbjct: 61 QREDAVNSLAYEAEARLRDPVY 80

[Close]
BLAST of Cucsa.250560 vs. TrEMBL
Match: A0A0B0PS92_GOSAR (LOB domain-containing 36-like protein OS=Gossypium arboreum GN=F383_00956 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.4e-21
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 1  MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM 60
          MSSSNS CAACKF R+KCTQEC+FAPYFPPD+ PQKF+NVH VFGA +NVA+LLN+L+  
Sbjct: 1  MSSSNSPCAACKFLRRKCTQECVFAPYFPPDN-PQKFANVHKVFGA-SNVAKLLNELNAS 60

Query: 61 ----TPISLAYKADFRLRDPIF 79
                 SLAY+A+ RLRDP++
Sbjct: 61 QREDAVNSLAYEAEARLRDPVY 80

[Close]
BLAST of Cucsa.250560 vs. TAIR10
Match: AT1G65620.1 (AT1G65620.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-21
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 1 

Query: 2  SSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM- 61
          SS+NS CAACKF R+KC  EC+FAPYFPPD  PQKF+NVH VFGA +NV +LLN+L    
Sbjct: 4  SSTNSPCAACKFLRRKCQPECVFAPYFPPDQ-PQKFANVHKVFGA-SNVTKLLNELHPSQ 63

Query: 62 ---TPISLAYKADFRLRDPIF 79
                SLAY+AD RLRDP++
Sbjct: 64 REDAVNSLAYEADMRLRDPVY 82

[Close]
BLAST of Cucsa.250560 vs. TAIR10
Match: AT5G66870.1 (AT5G66870.1 ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 97.4 bits (241), Expect = 4.4e-21
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1 

Query: 1  MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM 60
          M+SS+S CAACKF R+KCTQEC+FAPYFPPD  PQKF+ VH VFGA +NVA+LLN+L+  
Sbjct: 1  MASSSSPCAACKFLRRKCTQECVFAPYFPPDQ-PQKFAFVHKVFGA-SNVAKLLNELASN 60

Query: 61 ----TPISLAYKADFRLRDPIF 79
                 SL Y+A+ RLRDP++
Sbjct: 61 QREDAVNSLFYEAEARLRDPVY 80

[Close]
BLAST of Cucsa.250560 vs. TAIR10
Match: AT3G27650.1 (AT3G27650.1 LOB domain-containing protein 25)

HSP 1 Score: 86.7 bits (213), Expect = 7.7e-18
Identity = 41/79 (51.90%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 4   SNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM--- 63
           +NS CAACKF R+KCT +C+FAPYFPP+  P KF+NVH +FGA +NV+++L++++     
Sbjct: 36  TNSPCAACKFLRRKCTSDCVFAPYFPPEE-PTKFANVHRIFGA-SNVSKILHEVAPHQRE 95

Query: 64  -TPISLAYKADFRLRDPIF 79
               SLAY+A+ RL+DP++
Sbjct: 96  DAVNSLAYEAEARLKDPVY 112

[Close]
BLAST of Cucsa.250560 vs. TAIR10
Match: AT5G63090.2 (AT5G63090.2 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-17
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1 

Query: 2  SSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQL---- 61
          +S NS CAACKF R+KC   C+FAPYFPP+  P KF+NVH +FGA +NV +LLN+L    
Sbjct: 6  NSYNSPCAACKFLRRKCMPGCIFAPYFPPEE-PHKFANVHKIFGA-SNVTKLLNELLPHQ 65

Query: 62 SVMTPISLAYKADFRLRDPIF 79
                SLAY+A+ R+RDP++
Sbjct: 66 REDAVNSLAYEAEARVRDPVY 84

[Close]
BLAST of Cucsa.250560 vs. TAIR10
Match: AT2G23660.1 (AT2G23660.1 LOB domain-containing protein 10)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-16
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1 

Query: 4  SNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQL----SV 63
          +++ CAACK  R+KCTQEC+FAPYFPP + PQKF  VH VFGA +NV ++LN L      
Sbjct: 2  ASTPCAACKLLRRKCTQECVFAPYFPPTN-PQKFIFVHRVFGA-SNVTKILNDLPPDQRE 61

Query: 64 MTPISLAYKADFRLRDPIF 79
           T  SL Y+A+ R+RDPI+
Sbjct: 62 DTVNSLFYEAEARIRDPIY 78

[Close]
BLAST of Cucsa.250560 vs. NCBI nr
Match: gi|802641504|ref|XP_012079181.1| (PREDICTED: LOB domain-containing protein 36-like [Jatropha curcas])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 57/82 (69.51%), Postives = 66/82 (80.49%), Query Frame = 1 

Query: 1  MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM 60
          MSS NS CAACKFRRQKCTQEC+FAPYFPPD  PQKF+NVH VFGA +NVA+LLN+LS  
Sbjct: 1  MSSPNSPCAACKFRRQKCTQECVFAPYFPPDQ-PQKFANVHGVFGA-SNVAKLLNELSTT 60

Query: 61 ----TPISLAYKADFRLRDPIF 79
                 SLAY+A+ RLRDP++
Sbjct: 61 QREDAVNSLAYEAEARLRDPVY 80

[Close]
BLAST of Cucsa.250560 vs. NCBI nr
Match: gi|697183352|ref|XP_009600700.1| (PREDICTED: LOB domain-containing protein 36-like isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 1  MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM 60
          MSSSNS CAACKF R+KCTQEC+FAPYFPPD  PQKF+NVH VFGA +NVA+LLN+L+  
Sbjct: 1  MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQ-PQKFANVHKVFGA-SNVAKLLNELNAT 60

Query: 61 ----TPISLAYKADFRLRDPIF 79
                 SLAY+AD+RLRDP++
Sbjct: 61 QREDAVNSLAYEADYRLRDPVY 80

[Close]
BLAST of Cucsa.250560 vs. NCBI nr
Match: gi|697183350|ref|XP_009600699.1| (PREDICTED: LOB domain-containing protein 36-like isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 1  MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM 60
          MSSSNS CAACKF R+KCTQEC+FAPYFPPD  PQKF+NVH VFGA +NVA+LLN+L+  
Sbjct: 1  MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQ-PQKFANVHKVFGA-SNVAKLLNELNAT 60

Query: 61 ----TPISLAYKADFRLRDPIF 79
                 SLAY+AD+RLRDP++
Sbjct: 61 QREDAVNSLAYEADYRLRDPVY 80

[Close]
BLAST of Cucsa.250560 vs. NCBI nr
Match: gi|697151746|ref|XP_009630099.1| (PREDICTED: LOB domain-containing protein 36-like [Nicotiana tomentosiformis])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 1  MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM 60
          MSSSNS CAACKF R+KCTQEC+FAPYFPPD  PQKF+NVH VFGA +NVA+LLN+L+  
Sbjct: 1  MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQ-PQKFANVHKVFGA-SNVAKLLNELNAA 60

Query: 61 ----TPISLAYKADFRLRDPIF 79
                 SLAY+AD+RLRDP++
Sbjct: 61 QREDAVNSLAYEADYRLRDPVY 80

[Close]
BLAST of Cucsa.250560 vs. NCBI nr
Match: gi|449461471|ref|XP_004148465.1| (PREDICTED: LOB domain-containing protein 36-like [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 1  MSSSNSSCAACKFRRQKCTQECMFAPYFPPDHLPQKFSNVHNVFGATTNVAELLNQLSVM 60
          MSSSNS CAACKF R+KCTQEC+FAPYFPPD  PQKF+NVH VFGA +NVA+LLN+L+  
Sbjct: 1  MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQ-PQKFANVHKVFGA-SNVAKLLNELNAT 60

Query: 61 ----TPISLAYKADFRLRDPIF 79
                 SLAY+A+FRLRDP++
Sbjct: 61 QREDAVNSLAYEAEFRLRDPVY 80

The following BLAST results are available for this feature:
BLAST of Cucsa.250560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD6_ARATH2.7e-2062.96LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1[more]
LBD36_ARATH7.8e-2062.20LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1[more]
LBD6_MAIZE1.2e-1758.23LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1[more]
LBD6_ORYSJ1.6e-1758.23LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=... [more]
LBD6_ORYSI1.6e-1758.23LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1[more]
BLAST of Cucsa.250560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067KJ76_JATCU7.6e-2269.51Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12350 PE=4 SV=1[more]
A0A0A0LM25_CUCSA9.9e-2268.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G295940 PE=4 SV=1[more]
A0A166AZW5_DAUCA4.9e-2168.29Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010922 PE=4 SV=1[more]
A0A061DMY0_THECC6.4e-2167.07ASYMMETRIC LEAVES 2-like 1 OS=Theobroma cacao GN=TCM_000560 PE=4 SV=1[more]
A0A0B0PS92_GOSAR6.4e-2167.07LOB domain-containing 36-like protein OS=Gossypium arboreum GN=F383_00956 PE=4 S... [more]
BLAST of Cucsa.250560 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G65620.11.5e-2162.96 Lateral organ boundaries (LOB) domain family protein[more]
AT5G66870.14.4e-2162.20 ASYMMETRIC LEAVES 2-like 1[more]
AT3G27650.17.7e-1851.90 LOB domain-containing protein 25[more]
AT5G63090.21.3e-1754.32 Lateral organ boundaries (LOB) domain family protein[more]
AT2G23660.11.1e-1655.70 LOB domain-containing protein 10[more]
BLAST of Cucsa.250560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|802641504|ref|XP_012079181.1|1.1e-2169.51PREDICTED: LOB domain-containing protein 36-like [Jatropha curcas][more]
gi|697183352|ref|XP_009600700.1|1.1e-2168.29PREDICTED: LOB domain-containing protein 36-like isoform X2 [Nicotiana tomentosi... [more]
gi|697183350|ref|XP_009600699.1|1.1e-2168.29PREDICTED: LOB domain-containing protein 36-like isoform X1 [Nicotiana tomentosi... [more]
gi|697151746|ref|XP_009630099.1|1.1e-2168.29PREDICTED: LOB domain-containing protein 36-like [Nicotiana tomentosiformis][more]
gi|449461471|ref|XP_004148465.1|1.4e-2168.29PREDICTED: LOB domain-containing protein 36-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.250560.1Cucsa.250560.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 7..78
score: 3.6
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 6..84
score: 14
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 1..78
score: 2.9
NoneNo IPR availablePANTHERPTHR31301:SF22SUBFAMILY NOT NAMEDcoord: 1..78
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.250560CmaCh20G011230Cucurbita maxima (Rimu)cgycmaB0696
Cucsa.250560CmoCh20G011560Cucurbita moschata (Rifu)cgycmoB0696
Cucsa.250560CmoCh02G006140Cucurbita moschata (Rifu)cgycmoB0697
Cucsa.250560Lsi10G006450Bottle gourd (USVL1VR-Ls)cgylsiB409
Cucsa.250560Cp4.1LG16g00270Cucurbita pepo (Zucchini)cgycpeB0665
Cucsa.250560Cp4.1LG05g10760Cucurbita pepo (Zucchini)cgycpeB0667
Cucsa.250560MELO3C020944.2Melon (DHL92) v3.6.1cgymedB417
Cucsa.250560CsaV3_2G017480Cucumber (Chinese Long) v3cgycucB380
Cucsa.250560Cla97C02G038990Watermelon (97103) v2cgywmbB443
Cucsa.250560Bhi10G001844Wax gourdcgywgoB500
Cucsa.250560Carg11677Silver-seed gourdcarcgyB1174
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.250560Cucumber (Chinese Long) v3cgycucB381
Cucsa.250560Watermelon (97103) v2cgywmbB441
Cucsa.250560Watermelon (97103) v2cgywmbB442
Cucsa.250560Cucumber (Gy14) v1cgycgyB046
Cucsa.250560Cucurbita maxima (Rimu)cgycmaB0697
Cucsa.250560Cucurbita maxima (Rimu)cgycmaB0699
Cucsa.250560Cucurbita moschata (Rifu)cgycmoB0699
Cucsa.250560Wild cucumber (PI 183967)cgycpiB374
Cucsa.250560Wild cucumber (PI 183967)cgycpiB375
Cucsa.250560Cucumber (Chinese Long) v2cgycuB358
Cucsa.250560Cucumber (Chinese Long) v2cgycuB359
Cucsa.250560Watermelon (97103) v1cgywmB469
Cucsa.250560Melon (DHL92) v3.5.1cgymeB423
Cucsa.250560Melon (DHL92) v3.5.1cgymeB425
Cucsa.250560Watermelon (Charleston Gray)cgywcgB441
Cucsa.250560Watermelon (Charleston Gray)cgywcgB439
Cucsa.250560Watermelon (97103) v1cgywmB471
Cucsa.250560Cucurbita pepo (Zucchini)cgycpeB0663
Cucsa.250560Cucurbita pepo (Zucchini)cgycpeB0666
Cucsa.250560Melon (DHL92) v3.6.1cgymedB419
Cucsa.250560Silver-seed gourdcarcgyB1109