Cucsa.141990 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTCCTTGAAGCTGCTCTTTTCAACTTGCTAGGGTTTATCTTCTTCTTCTTTCTACATTCTTCTACACCATTAGTGCCGCTTCCTCAATCTCTTATCTTCAGGTACTCCTTCTCCTTCTTCTCCCAAATTCCATTTCTGCACCTTCATTTGACTTAACACTCGTTCTTTAATTCAATAACTCCTTCCTTTCTTCGTAGAACGTCAAATGGCGGCAGCTCATTTTACTGGCTCTTTAATTTCCTCGAGGAATTTGCTGCCTTCTTTCAATGGCCTTCGTCCTTCTTCTGTGAAATTCTCTCCTTCTGTTGCCCATGCTCGAGTTGGGGGTTTGGCCAACAGATCTTTCACTGGCTTGGTTGTTAGAGCTGCTACTGTGGTTGCTCCAAAGGTTTTATAGCATCTACTTTTCTACTACTTTTCGTTTTTTtGTCTTTCTATTATAGTTTTAGAGGAGGGTATGTTAAATTTAGCTGTGAATTTGCTAATACACTTCCCAATTCTATGGTTTTTTGCTGGATGTTTCAGGTTTGTAATCTCCGGTTGTCTTATTTTAGCCTTGCTTCCATGAATTTGACCATTGTTCCTTTGCATTTTTTtGTGTATATATATTTTAGACCGTTTGTTAACCAATTGGTTTCTAAAAATTAACAATTTCTTACCAAGGTCGTGTTGAATTCTTATCTACTTTCTTTAGTTTTCAAAACCTAGCTTTTTTTTTtGGAAGTATTTGTAGAAACTAGAAAGTAGATAACGAAGCTTAATTTTTAATAACTAGAAACAAAAAAAAaCCAAAGAGTTACCAAATTCATGTTTCTTGTTAGTTGATTTTACGTTTTTGATAGTTCTATATAGTTTTGCATAACTACAATCCTAGTTGCAAGCGGTGTGTATATGTTTTGAAGGACTGGTTTACTTCAAATTACTGTGTGCAGATGCAATGTTTCAAACAAATTGAGTTTATTAGTAAGCTGCTAATAGTTTTCTAGTAGTGTGCTTTTTACGCGGTTGTTTTGTGAATAAATGTTTACAAGGAATTTACCTGAGGTTTGCGAACTGCAATGTGTCAGTACACTTCAATTAAGCCATTGGGCGATAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTGCTTCCGTCAACAGCTCAGACAAGACCCCAAGGAGGGGAGGTAGTTGCGGTTGGTGAAGGCAAGACAATTGGAAATACTAAAGTAGAAGCTAGTGTTAAGGTATTCAGAGAGAAACCTTTCTCTGATTTATGCGGATAATCATCCGATGTGTTATCTTATGTTTTATTATTATTCATTCAATTTTTTtCCCTTTGATTTGATAGACTGGTGCTCAAGTAGTGTACTCTAAGTACGCTGGAACTGAATTAGAGTTTAATGGTTCAAACCATCTTATCCTGAAAGAAGATGATATAGTTGGTATACTAGAGACGGACGATGCGAAAGATCTTCAGCCCCTAAACGACAGGGTTTTGATCAAGGTTTGTCTTCACTATGTTCTTCTAAAATGTTCCTGTTTGGAGTAACCCATAAAATCAAATTATCTGAATCTTCCAATATGTTCGTCTGAGATGTTGCTTGGTCGTGTATGTAGAAATACTTTCCAATTTACATTTTGAAGAGATGAGTGAAGTTGGATGTGATGCTACTTGACATACAGTTTTAACACCAGTGTAGTCTAGTCATCCATTATTTGATTCGAAGGAACGTGAAACATGACAACAATGTAATACTTTGTTCTAAAACTGGATCACAGGTAGCTGAGGCTGAGGAAAAAACAGCTGGAGGTTTATTGTTAACAGAGGGATCAAAAGAGAAGCCGTCCATCGGAACGGTCAGTCATCATGCAAAGTCGCATCTTCCTTATCATTAGAGATTCCTAGGCTGTATGATTAACGTAAAGCTTTTCATTTACACAGGTGATCGCAGTTGGTCCAGGTCATCTGGACGAAGAAGGAAAAAGGAAACCGCTAACCGTGGCAGTGGGAAACAACGTGATGTACTCGAAATATGCTGGAAATGAATTCAAGGGCAAAGATGGATCTGATTACATTGCTTTGAGGGCATCAGACTTGATTGCAGTGCTATCTTAGTTGTAAAAACTTAAATTAGACTGCTGATTGGTTAATGGTGATGTAAAACTGATGTGTTTTAATGGTTTTGGTTTGGTGAAAAATGAGGAAATTGAGATGGATTTTGGGAGAGAAGAGTGTTAGAGTAAGATTTGAATTGAAAAGGCATCTGAGATGGAAGTTTCGGAAATAAGAGGGGAATTTATTTGTTGAATATCAGATTCTGAATACTTCAGGTTATTCAAGTTTGAATCTTGCATTGACCATTCTCACACGGTGTTGGGAGAGAAAAAGAGAGACCAAACTTGACTTTGG TCTCCTTGAAGCTGCTCTTTTCAACTTGCTAGGGTTTATCTTCTTCTTCTTTCTACATTCTTCTACACCATTAGTGCCGCTTCCTCAATCTCTTATCTTCAGAACGTCAAATGGCGGCAGCTCATTTTACTGGCTCTTTAATTTCCTCGAGGAATTTGCTGCCTTCTTTCAATGGCCTTCGTCCTTCTTCTGTGAAATTCTCTCCTTCTGTTGCCCATGCTCGAGTTGGGGGTTTGGCCAACAGATCTTTCACTGGCTTGGTTGTTAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATTAAGCCATTGGGCGATAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTGCTTCCGTCAACAGCTCAGACAAGACCCCAAGGAGGGGAGGTAGTTGCGGTTGGTGAAGGCAAGACAATTGGAAATACTAAAGTAGAAGCTAGTGTTAAGACTGGTGCTCAAGTAGTGTACTCTAAGTACGCTGGAACTGAATTAGAGTTTAATGGTTCAAACCATCTTATCCTGAAAGAAGATGATATAGTTGGTATACTAGAGACGGACGATGCGAAAGATCTTCAGCCCCTAAACGACAGGGTTTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCTGGAGGTTTATTGTTAACAGAGGGATCAAAAGAGAAGCCGTCCATCGGAACGGTGATCGCAGTTGGTCCAGGTCATCTGGACGAAGAAGGAAAAAGGAAACCGCTAACCGTGGCAGTGGGAAACAACGTGATGTACTCGAAATATGCTGGAAATGAATTCAAGGGCAAAGATGGATCTGATTACATTGCTTTGAGGGCATCAGACTTGATTGCAGTGCTATCTTAGTTGTAAAAACTTAAATTAGACTGCTGATTGGTTAATGGTGATGTAAAACTGATGTGTTTTAATGGTTTTGGTTTGGTGAAAAATGAGGAAATTGAGATGGATTTTGGGAGAGAAGAGTGTTAGAGTAAGATTTGAATTGAAAAGGCATCTGAGATGGAAGTTTCGGAAATAAGAGGGGAATTTATTTGTTGAATATCAGATTCTGAATACTTCAGGTTATTCAAGTTTGAATCTTGCATTGACCATTCTCACACGGTGTTGGGAGAGAAAAAGAGAGACCAAACTTGACTTTGG ATGGCGGCAGCTCATTTTACTGGCTCTTTAATTTCCTCGAGGAATTTGCTGCCTTCTTTCAATGGCCTTCGTCCTTCTTCTGTGAAATTCTCTCCTTCTGTTGCCCATGCTCGAGTTGGGGGTTTGGCCAACAGATCTTTCACTGGCTTGGTTGTTAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATTAAGCCATTGGGCGATAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTGCTTCCGTCAACAGCTCAGACAAGACCCCAAGGAGGGGAGGTAGTTGCGGTTGGTGAAGGCAAGACAATTGGAAATACTAAAGTAGAAGCTAGTGTTAAGACTGGTGCTCAAGTAGTGTACTCTAAGTACGCTGGAACTGAATTAGAGTTTAATGGTTCAAACCATCTTATCCTGAAAGAAGATGATATAGTTGGTATACTAGAGACGGACGATGCGAAAGATCTTCAGCCCCTAAACGACAGGGTTTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCTGGAGGTTTATTGTTAACAGAGGGATCAAAAGAGAAGCCGTCCATCGGAACGGTGATCGCAGTTGGTCCAGGTCATCTGGACGAAGAAGGAAAAAGGAAACCGCTAACCGTGGCAGTGGGAAACAACGTGATGTACTCGAAATATGCTGGAAATGAATTCAAGGGCAAAGATGGATCTGATTACATTGCTTTGAGGGCATCAGACTTGATTGCAGTGCTATCTTAG MAAAHFTGSLISSRNLLPSFNGLRPSSVKFSPSVAHARVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPSTAQTRPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSNHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEGSKEKPSIGTVIAVGPGHLDEEGKRKPLTVAVGNNVMYSKYAGNEFKGKDGSDYIALRASDLIAVLS*
BLAST of Cucsa.141990 vs. Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2) HSP 1 Score: 354.8 bits (909), Expect = 8.2e-97 Identity = 188/257 (73.15%), Postives = 214/257 (83.27%), Query Frame = 1
BLAST of Cucsa.141990 vs. Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1) HSP 1 Score: 325.5 bits (833), Expect = 5.3e-88 Identity = 167/258 (64.73%), Postives = 199/258 (77.13%), Query Frame = 1
BLAST of Cucsa.141990 vs. Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 4.1e-24 Identity = 53/94 (56.38%), Postives = 76/94 (80.85%), Query Frame = 1
HSP 2 Score: 91.3 bits (225), Expect = 1.7e-17 Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 1
BLAST of Cucsa.141990 vs. Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23 Identity = 52/92 (56.52%), Postives = 72/92 (78.26%), Query Frame = 1
HSP 2 Score: 89.7 bits (221), Expect = 4.9e-17 Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 1
BLAST of Cucsa.141990 vs. Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23 Identity = 52/92 (56.52%), Postives = 72/92 (78.26%), Query Frame = 1
HSP 2 Score: 89.7 bits (221), Expect = 4.9e-17 Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 1
BLAST of Cucsa.141990 vs. TrEMBL
Match: A0A0A0LZM6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G597740 PE=3 SV=1) HSP 1 Score: 491.1 bits (1263), Expect = 8.1e-136 Identity = 253/254 (99.61%), Postives = 254/254 (100.00%), Query Frame = 1
BLAST of Cucsa.141990 vs. TrEMBL
Match: A0A061GL19_THECC (Chaperonin 20 isoform 1 OS=Theobroma cacao GN=TCM_037485 PE=3 SV=1) HSP 1 Score: 389.8 bits (1000), Expect = 2.6e-105 Identity = 204/258 (79.07%), Postives = 227/258 (87.98%), Query Frame = 1
BLAST of Cucsa.141990 vs. TrEMBL
Match: A0A0B0P1F9_GOSAR (20 kDa chaperonin, chloroplastic-like protein OS=Gossypium arboreum GN=F383_01520 PE=3 SV=1) HSP 1 Score: 387.9 bits (995), Expect = 9.7e-105 Identity = 203/258 (78.68%), Postives = 222/258 (86.05%), Query Frame = 1
BLAST of Cucsa.141990 vs. TrEMBL
Match: W9R4V1_9ROSA (20 kDa chaperonin OS=Morus notabilis GN=L484_004086 PE=3 SV=1) HSP 1 Score: 387.9 bits (995), Expect = 9.7e-105 Identity = 203/257 (78.99%), Postives = 226/257 (87.94%), Query Frame = 1
BLAST of Cucsa.141990 vs. TrEMBL
Match: Q6B4V4_VITVI (Chloroplast chaperonin 21 OS=Vitis vinifera GN=cpn21 PE=3 SV=1) HSP 1 Score: 387.1 bits (993), Expect = 1.7e-104 Identity = 199/250 (79.60%), Postives = 220/250 (88.00%), Query Frame = 1
BLAST of Cucsa.141990 vs. TAIR10
Match: AT5G20720.1 (AT5G20720.1 chaperonin 20) HSP 1 Score: 354.8 bits (909), Expect = 4.6e-98 Identity = 188/257 (73.15%), Postives = 214/257 (83.27%), Query Frame = 1
BLAST of Cucsa.141990 vs. TAIR10
Match: AT1G23100.1 (AT1G23100.1 GroES-like family protein) HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08 Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1
BLAST of Cucsa.141990 vs. TAIR10
Match: AT1G14980.1 (AT1G14980.1 chaperonin 10) HSP 1 Score: 56.2 bits (134), Expect = 3.4e-08 Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 1
BLAST of Cucsa.141990 vs. TAIR10
Match: AT3G60210.1 (AT3G60210.1 GroES-like family protein) HSP 1 Score: 50.4 bits (119), Expect = 1.9e-06 Identity = 40/132 (30.30%), Postives = 67/132 (50.76%), Query Frame = 1
HSP 2 Score: 37.7 bits (86), Expect = 1.2e-02 Identity = 28/94 (29.79%), Postives = 51/94 (54.26%), Query Frame = 1
BLAST of Cucsa.141990 vs. TAIR10
Match: AT2G44650.1 (AT2G44650.1 chloroplast chaperonin 10) HSP 1 Score: 49.3 bits (116), Expect = 4.1e-06 Identity = 30/97 (30.93%), Postives = 53/97 (54.64%), Query Frame = 1
BLAST of Cucsa.141990 vs. NCBI nr
Match: gi|449452602|ref|XP_004144048.1| (PREDICTED: 20 kDa chaperonin, chloroplastic [Cucumis sativus]) HSP 1 Score: 495.4 bits (1274), Expect = 6.2e-137 Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1
BLAST of Cucsa.141990 vs. NCBI nr
Match: gi|700211231|gb|KGN66327.1| (hypothetical protein Csa_1G597740 [Cucumis sativus]) HSP 1 Score: 491.1 bits (1263), Expect = 1.2e-135 Identity = 253/254 (99.61%), Postives = 254/254 (100.00%), Query Frame = 1
BLAST of Cucsa.141990 vs. NCBI nr
Match: gi|659100155|ref|XP_008450956.1| (PREDICTED: 20 kDa chaperonin, chloroplastic [Cucumis melo]) HSP 1 Score: 476.9 bits (1226), Expect = 2.3e-131 Identity = 246/256 (96.09%), Postives = 249/256 (97.27%), Query Frame = 1
BLAST of Cucsa.141990 vs. NCBI nr
Match: gi|590575062|ref|XP_007012580.1| (Chaperonin 20 isoform 1 [Theobroma cacao]) HSP 1 Score: 389.8 bits (1000), Expect = 3.7e-105 Identity = 204/258 (79.07%), Postives = 227/258 (87.98%), Query Frame = 1
BLAST of Cucsa.141990 vs. NCBI nr
Match: gi|1009172798|ref|XP_015867470.1| (PREDICTED: 20 kDa chaperonin, chloroplastic-like [Ziziphus jujuba]) HSP 1 Score: 389.8 bits (1000), Expect = 3.7e-105 Identity = 202/256 (78.91%), Postives = 225/256 (87.89%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|