Cucsa.079130 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCCTCTTCTCCCTTCACATCCACACAAGGTTCAAACACAACCAAGTTTCCTTTTGCAATTTCTACACTCTTCTTCTTCCTCCATTTCCACTCTCCAATTCGTCTCCAGAAATCATCGTTTCTGGTTTCGGATGGGAACCACATTGTTTATCACTAACCCATTCTCCTCCATCTTTCACCATCAATACCTTCCTTCCCCCCATCTCCCTCCTCACCATTTTCTCCCTAAACGGGTCTCCGCCGTCCACGGTGCCCACAACCAAAACCCCATCTCATCTACCGCTTTGAATCGGAGATGGGCTTTGGTTTCCGGTGTTTCCTTGCTTTCTTCCGCGGCTTTGGGGTTGCAAAACGACTGTTTGGCTGCAGTGAAGCAAGGCCTTCTTGCTGGCAGGATTCCCGGGTTGTCTGAACCAGATGAACAGGGTTGGCTTTTGTCATTTCCTTTTCTACTTTACATCTGTCAATCTTCTGGTTGCTCTAATTTGTGGGTTGTCAAACACTTTTGTTCATTCTTCTCTAACTCTATCAATTTTGTTCATGTAGTTTTACTTTTGGAGCGATTTATAGTCTTTCAATATGGTTAAGTTACGAGCATGGATTATGGACTTTCATGTCTTTTAACTTTTGAAAGTATAATATCAGGTTTCTTAAACCTTCATATTTGAGGTCTTTAATATACTCATAAACTTTTTtGCATAAAGTTGAAATTTGATGGACATATCAGATACATAAATGAAAGTCTAGGGACTTATTTTAATGTTCAGTGACTTGTTTGACAAAAATTAAGAAGTCCAAGGACAATTTGTAGCTGAACCTTTAAAATTTGTACATTGAAGAATACAGATGCCATGTATACTTTTCGTTGCCATTTAATTGAATACTTAGTGAATCAATATATATTCACAAAAATGCAGGGGTTGAAATGAAATAAATGAAACAAAGTGTAGAATGTTAAAAACACTATAATACGAAGACTAGAGTTAGTTAATATAACCTTTTCTTCGTTGGGCTATAGCTGAATCTCTGCAGTAAGAAAACAAACGGAGCTGTTCATGTCATCTTTTCTATATCAACTCACATAGGCCATTGTCTTTCTGTTTTGCTAGCGCAGGAATTTCTTGTGCCAAACATACAAAAATGTTAAGTTCTTGAATAAAAATATGTCCAGCAAATTTCATTTTGACCATTGGATGCTTTGAACTGCTTTCCCTTTCATCTCAAGCTTAGCATATCTGGTTTCTTGTTTGTTGCCTGCTCAGACAGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCTGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTAAATGCTGCTTGATATTCCTCTTTTAAGTTTTAACCTAACTAAAGATGATGATGAAGACCTACAAAAGAAACAAATGGCTTCTACCTCAAACAGTTTCTTCATCAGATTAGAGAAACTAATGAAACTTGACCAACCATTTAAACTAATAAGATATTAACCTGGATTGTTAGGCAGTTGCTTTGAGTGGTTTTGAGTCTCCACGCTGAAGGATGACTTAATTGGTGGCCATCCACTAAGAATATTAAAATTGAACGAGTTTCTTGACAGTTAAAAGAAAACCAACAATTATCTTTGGAATCTGTGACACATCCTTGTTGACTAGAGGAGTAGAGTGATGCCTGTATATATAAACATGGTAAAGAAAGATCCAATGGTATCTATTTCCAGTTTATATCTCTGCCTGGAATTAAAATTTGTCATTCTAATTGGATATCTCCATGCAAGTTAATTTCACGTTCATTTTGATTAAAGAAAGACATGCAACAATGGACATGAGACAATGTGCTTTTGTGTTGCAGGTTCCGGTGTCAATTGCTGATCTTGGTGGGACAGAGATTGATCTCAGGTTCGGAAGCTTGAAGGAAGGTCGGGTGTTTGTAGTCGTTGCGCCTGTTCGTCGGTTTTCCGATGGTGCATTTCCCCAAAACTTTATGCTTCTTGTTCAGCTTTCCATTTCAATATACTGCCACCTCTCACTCTTCTGAGATCTGACTTTGTTATTGTTTTGTGAAGTTATCGGCGAGGATGCAACCATTGAAATGGTTGGACCTCCAGAGAAAGTAATCAATGCATTTGGACCAGAAGTGATAGGAGAAAACGTAGAAGGAAAGGTGATCAGCATGAGCGTGGCGGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTATAATCACAGCGACAGCGGCAGGAAATCGTCTCTACCTATTCAATGTAACAGCAAATGGTAAGAGCCTACAAAGAACACCTTGTTTATATGATATGAGTTAAAATCATATAAGAAATCAATTGTTTTCCATTAGAACTAAAGAAAGTTTTTTTCTTGGTTTCTTATAGGCCTTCAATGGAAGAGACACTACAATGACTTGAAAAGGATTGCGGATTCGTTTCGCATAGTGTGATGAAGTTGTTCCAAAACTAGTTATAGTATGCATATACATTTTGATTTACAGGAGAAATAGTTGGTCGAAGCCTTAAGGTTTTTGTTTGATTGATTGGCTTTGCATTACCATATGTTTATACTTCTGCTTGATGGAGGAGACATGACCTTGATATATTGAGTCGTAGTTGTATCGACATGACAGAATTAATATCATCGTGTAAAGTAATTG ATGCCCTCTTCTCCCTTCACATCCACACAAGGTTCAAACACAACCAAGTTTCCTTTTGCAATTTCTACACTCTTCTTCTTCCTCCATTTCCACTCTCCAATTCGTCTCCAGAAATCATCGTTTCTGGTTTCGGATGGGAACCACATTGTTTATCACTAACCCATTCTCCTCCATCTTTCACCATCAATACCTTCCTTCCCCCCATCTCCCTCCTCACCATTTTCTCCCTAAACGGGTCTCCGCCGTCCACGGTGCCCACAACCAAAACCCCATCTCATCTACCGCTTTGAATCGGAGATGGGCTTTGGTTTCCGGTGTTTCCTTGCTTTCTTCCGCGGCTTTGGGGTTGCAAAACGACTGTTTGGCTGCAGTGAAGCAAGGCCTTCTTGCTGGCAGGATTCCCGGGTTGTCTGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCTGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCGGTGTCAATTGCTGATCTTGGTGGGACAGAGATTGATCTCAGGTTCGGAAGCTTGAAGGAAGGTCGGGTGTTTGTAGTCGTTGCGCCTGTTCGTCGGTTTTCCGATGTTATCGGCGAGGATGCAACCATTGAAATGGTTGGACCTCCAGAGAAAGTAATCAATGCATTTGGACCAGAAGTGATAGGAGAAAACGTAGAAGGAAAGGTGATCAGCATGAGCGTGGCGGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTATAATCACAGCGACAGCGGCAGGAAATCGTCTCTACCTATTCAATGTAACAGCAAATGGCCTTCAATGGAAGAGACACTACAATGACTTGAAAAGGATTGCGGATTCGTTTCGCATAGTGTGATGAAGTTGTTCCAAAACTAGTTATAGTATGCATATACATTTTGATTTACAGGAGAAATAGTTGGTCGAAGCCTTAAGGTTTTTGTTTGATTGATTGGCTTTGCATTACCATATGTTTATACTTCTGCTTGATGGAGGAGACATGACCTTGATATATTGAGTCGTAGTTGTATCGACATGACAGAATTAATATCATCGTGTAAAGTAATTG ATGGGAACCACATTGTTTATCACTAACCCATTCTCCTCCATCTTTCACCATCAATACCTTCCTTCCCCCCATCTCCCTCCTCACCATTTTCTCCCTAAACGGGTCTCCGCCGTCCACGGTGCCCACAACCAAAACCCCATCTCATCTACCGCTTTGAATCGGAGATGGGCTTTGGTTTCCGGTGTTTCCTTGCTTTCTTCCGCGGCTTTGGGGTTGCAAAACGACTGTTTGGCTGCAGTGAAGCAAGGCCTTCTTGCTGGCAGGATTCCCGGGTTGTCTGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCTGGTGGGCATGGAGTTGGATGGAGTCCTATTATTCCTTATGCCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCGGTGTCAATTGCTGATCTTGGTGGGACAGAGATTGATCTCAGGTTCGGAAGCTTGAAGGAAGGTCGGGTGTTTGTAGTCGTTGCGCCTGTTCGTCGGTTTTCCGATGTTATCGGCGAGGATGCAACCATTGAAATGGTTGGACCTCCAGAGAAAGTAATCAATGCATTTGGACCAGAAGTGATAGGAGAAAACGTAGAAGGAAAGGTGATCAGCATGAGCGTGGCGGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCATGTTATAATCACAGCGACAGCGGCAGGAAATCGTCTCTACCTATTCAATGTAACAGCAAATGGCCTTCAATGGAAGAGACACTACAATGACTTGAAAAGGATTGCGGATTCGTTTCGCATAGTGTGA MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVSGVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYLFNVTANGLQWKRHYNDLKRIADSFRIV*
BLAST of Cucsa.079130 vs. Swiss-Prot
Match: PPD4_ARATH (PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 PE=1 SV=2) HSP 1 Score: 347.4 bits (890), Expect = 1.4e-94 Identity = 174/245 (71.02%), Postives = 199/245 (81.22%), Query Frame = 1
BLAST of Cucsa.079130 vs. Swiss-Prot
Match: PPD6_ARATH (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 8.2e-15 Identity = 52/160 (32.50%), Postives = 90/160 (56.25%), Query Frame = 1
BLAST of Cucsa.079130 vs. Swiss-Prot
Match: TL19_ARATH (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2) HSP 1 Score: 56.6 bits (135), Expect = 4.8e-07 Identity = 43/152 (28.29%), Postives = 69/152 (45.39%), Query Frame = 1
BLAST of Cucsa.079130 vs. TrEMBL
Match: A0A0A0K501_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G322590 PE=4 SV=1) HSP 1 Score: 547.4 bits (1409), Expect = 1.0e-152 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1
BLAST of Cucsa.079130 vs. TrEMBL
Match: B9SJK7_RICCO (Thylakoid lumenal 29.8 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0138880 PE=4 SV=1) HSP 1 Score: 394.8 bits (1013), Expect = 8.3e-107 Identity = 200/272 (73.53%), Postives = 222/272 (81.62%), Query Frame = 1
BLAST of Cucsa.079130 vs. TrEMBL
Match: B9GTN1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07330g PE=4 SV=1) HSP 1 Score: 381.7 bits (979), Expect = 7.3e-103 Identity = 194/276 (70.29%), Postives = 217/276 (78.62%), Query Frame = 1
BLAST of Cucsa.079130 vs. TrEMBL
Match: E0CQM8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g15360 PE=4 SV=1) HSP 1 Score: 380.9 bits (977), Expect = 1.2e-102 Identity = 192/279 (68.82%), Postives = 216/279 (77.42%), Query Frame = 1
BLAST of Cucsa.079130 vs. TrEMBL
Match: A0A0F7GYL3_9ROSI (Photosystem II reaction center PsbP family protein OS=Geranium incanum GN=PPD4 PE=2 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 3.6e-102 Identity = 191/267 (71.54%), Postives = 217/267 (81.27%), Query Frame = 1
BLAST of Cucsa.079130 vs. TAIR10
Match: AT1G77090.1 (AT1G77090.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) HSP 1 Score: 347.4 bits (890), Expect = 7.7e-96 Identity = 174/245 (71.02%), Postives = 199/245 (81.22%), Query Frame = 1
BLAST of Cucsa.079130 vs. TAIR10
Match: AT3G56650.1 (AT3G56650.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) HSP 1 Score: 82.4 bits (202), Expect = 4.6e-16 Identity = 52/160 (32.50%), Postives = 90/160 (56.25%), Query Frame = 1
BLAST of Cucsa.079130 vs. TAIR10
Match: AT3G63540.1 (AT3G63540.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) HSP 1 Score: 48.5 bits (114), Expect = 7.4e-06 Identity = 40/148 (27.03%), Postives = 66/148 (44.59%), Query Frame = 1
BLAST of Cucsa.079130 vs. NCBI nr
Match: gi|449443776|ref|XP_004139653.1| (PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 547.4 bits (1409), Expect = 1.4e-152 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1
BLAST of Cucsa.079130 vs. NCBI nr
Match: gi|659123095|ref|XP_008461486.1| (PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 503.8 bits (1296), Expect = 1.8e-139 Identity = 248/265 (93.58%), Postives = 254/265 (95.85%), Query Frame = 1
BLAST of Cucsa.079130 vs. NCBI nr
Match: gi|255570434|ref|XP_002526176.1| (PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X2 [Ricinus communis]) HSP 1 Score: 394.8 bits (1013), Expect = 1.2e-106 Identity = 200/272 (73.53%), Postives = 222/272 (81.62%), Query Frame = 1
BLAST of Cucsa.079130 vs. NCBI nr
Match: gi|1000952001|ref|XP_015579057.1| (PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Ricinus communis]) HSP 1 Score: 385.6 bits (989), Expect = 7.2e-104 Identity = 200/285 (70.18%), Postives = 222/285 (77.89%), Query Frame = 1
BLAST of Cucsa.079130 vs. NCBI nr
Match: gi|720046211|ref|XP_010270435.1| (PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Nelumbo nucifera]) HSP 1 Score: 384.0 bits (985), Expect = 2.1e-103 Identity = 199/284 (70.07%), Postives = 221/284 (77.82%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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