Cucsa.057920 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAAATTAGAATAAAGAAAAGAAAGAAAAAAACCCTAAACCTCTCTCCCTTTCCCTCCCTTGTGTCTTCGACTGTGCATTAGCCGCAGCCCTCTGATCGTTTCAGTGCAGTCGCCGACCAATCCCTTCCCCATCCTTTTCTTCTTCCTCTGCCGAGTTTCGGCGGTCAACCCACGGCGACCAGGAGTCTTCCCTTGTAACATTTTCGGAACCATGGTAAGCAACAATTTTCGATCTGGAACAATGGTTATTGTTAATGTACCCTTATGTCGTATTAGATTATTGGATGGATTTTTCTGTTGATTTCACGGAGTTTTGGTTGTTTGAGTTCTCCAACCCCTCCATTTTTCCTTGATTCGTAAATGACGTTTAATTTTTAAGATGGTTGTTTTGACAATGTAGAGCATACCAGTTAACCCGAAGCCATTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGAATGGAGTACAAAGGTTTGCTTCTATCTGCCGTTTGTTTTCCTCATTTCTCTTGACTGCTAGAGTTTGTACTGACTTTCCTCTACATTTCAGGATTTCTTGTCTCGGTAGACTCGTACATGAACTTGCAGGTGTGTTTTCTACTTCAGTTGAAACTAATGTAGATATTTTTCTTGGGTCTTTCTCTGCTTCAGGACTTAGTTTATAGCTAAGCCATCCGTGAACTATTTTTGAGTCTAATGAAATTGTGTACTACGAGAAGGAAATTTACTGTAATTGTCTTTTTTCTTGAGAGATTGTGCAAATGTAGGGTTGATGGATACTATGTTCTTCATCTCTGATTCTAATTTGATGTGTTCTGCTTGTATTAAGAGTTTTCTCTTACAACTATTTATCATTTTCTAATTTCACAGTGCTATGAAATAATCTGATTTGTAAGTTCATTTGTTCTAAAATTTAGATCATTAATGATTACAAATTAGAATATGTGAAGTAAAATCAACCATTTTGCTGAATTTTTTGTTTTGATAATTAGAAAATTTATTTGAAATTGGTTTTCAAATAAGTCCGTAGTCTCTTTCAGTGGCTGATTTCTACAACTCTTTAAATGTAGCTTGCCAATACTGAGGAATATATCGACGGGCAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTAGCCTTCTCATTGATTGAAATGACAGTATCCAATGCCTCAATTCTTATTTTCACGTAGTAATATGATAGGAATGCTATTAGTAACATCATTACACTGCCAAGTGTATATTATACTTTCCCAAGTAAAAGAAAAGTGAAAAGCGGAGAATTATTTAGTAGTCAAGGCTTGAGTGAGCATATTCAAGAGAGGGAAAGTTTCAAATACCTCAAATACTTAATTATCTTGTAGTTTTATATTTGAGCATATTTGCAAGGTTGTGCTTTTGGTCTTTGTCTGGTGCATATGGTGGACTTGGCCATACTCATGGAAGAATTCTtCCCTGATATCTGACATCAAACATGAAAaTTTTCCTGTTTTTTCCTGGTAGGTGTAACAATGTTCTTTATCTTCGAGGAGTGCCAGAGGATGAAGAGATTGAAGATGCGGAGCGTGACTAGCATGTAAATCTTAGCAGCTTTTCATTGTCGCAGTAACAGTGAAGTATGTAGCTTTTCAGTCTTCTAGTTTTTCTTTCTTCTGTTGTGCTTAATCTGTATCTTGTTGTTATTGATACTCTATTTATGCTGTCTCAAAGGTCAGGAACTTTCTTCTTTGGTTGATTTCAAACCTGCAACAATGGTAGATTAAGTATTCTTGACTCTCAAAGTAACATCTATGTTTCCGGGTAGCTTGAATTGCTTTAGTTTTCTATACAAGAAATAGTTGAGCTTTTATAGTTTGTTCATGTGGAATGCAACGGGTTGGAATATATTTGTGACCTTGTACTGCTTAGATTGGCCAAGTTTCAAAATTTACATGTCACCTTCATCTAaTAGCATGAGCAATGTATTATCTACTTTTGTTtTTCCCATATGTGCCATAGATATACGTTGTGATACTCTTGTAGATGCAAATGGCA AGAAATTAGAATAAAGAAAAGAAAGAAAAAAACCCTAAACCTCTCTCCCTTTCCCTCCCTTGTGTCTTCGACTGTGCATTAGCCGCAGCCCTCTGATCGTTTCAGTGCAGTCGCCGACCAATCCCTTCCCCATCCTTTTCTTCTTCCTCTGCCGAGTTTCGGCGGTCAACCCACGGCGACCAGGAGTCTTCCCTTGTAACATTTTCGGAACCATGAGCATACCAGTTAACCCGAAGCCATTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGAATGGAGTACAAAGGATTTCTTGTCTCGGTAGACTCGTACATGAACTTGCAGCTTGCCAATACTGAGGAATATATCGACGGGCAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTGTAACAATGTTCTTTATCTTCGAGGAGTGCCAGAGGATGAAGAGATTGAAGATGCGGAGCGTGACTAGCATGTAAATCTTAGCAGCTTTTCATTGTCGCAGTAACAGTGAAGTCAGGAACTTTCTTCTTTGGTTGATTTCAAACCTGCAACAATGGTAGATTAAGTATTCTTGACTCTCAAAGTAACATCTATGTTTCCGGGTAGCTTGAATTGCTTTAGTTTTCTATACAAGAAATAGTTGAGCTTTTATAGTTTGTTCATGTGGAATGCAACGGGTTGGAATATATTTGTGACCTTGTACTGCTTAGATTGGCCAAGTTTCAAAATTTACATGTCACCTTCATCTAATAGCATGAGCAATGTATTATCTACTTTTGTTTTTCCCATATGTGCCATAGATATACGTTGTGATACTCTTGTAGATGCAAATGGCA ATGAGCATACCAGTTAACCCGAAGCCATTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGAATGGAGTACAAAGGATTTCTTGTCTCGGTAGACTCGTACATGAACTTGCAGCTTGCCAATACTGAGGAATATATCGACGGGCAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTGTAACAATGTTCTTTATCTTCGAGGAGTGCCAGAGGATGAAGAGATTGAAGATGCGGAGCGTGACTAG MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD*
BLAST of Cucsa.057920 vs. Swiss-Prot
Match: RUXF_ARATH (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 4.1e-40 Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 1
BLAST of Cucsa.057920 vs. Swiss-Prot
Match: RUXF_MOUSE (Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=1 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 6.4e-33 Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 1
BLAST of Cucsa.057920 vs. Swiss-Prot
Match: RUXF_HUMAN (Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 6.4e-33 Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 1
BLAST of Cucsa.057920 vs. Swiss-Prot
Match: RUXF_XENLA (Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 6.4e-33 Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 1
BLAST of Cucsa.057920 vs. Swiss-Prot
Match: RUXF_BOVIN (Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3 SV=2) HSP 1 Score: 141.0 bits (354), Expect = 6.4e-33 Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 1
BLAST of Cucsa.057920 vs. TrEMBL
Match: W9SLN6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024441 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 1.3e-40 Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of Cucsa.057920 vs. TrEMBL
Match: M5XGF4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014017mg PE=3 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 3.7e-40 Identity = 81/86 (94.19%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of Cucsa.057920 vs. TrEMBL
Match: B9SXM7_RICCO (Small nuclear ribonucleoprotein f, putative OS=Ricinus communis GN=RCOM_0017870 PE=3 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 4.1e-39 Identity = 78/86 (90.70%), Postives = 84/86 (97.67%), Query Frame = 1
BLAST of Cucsa.057920 vs. TrEMBL
Match: A0A059CKE6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00155 PE=3 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 4.1e-39 Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 1
BLAST of Cucsa.057920 vs. TrEMBL
Match: A0A103YIG5_CYNCS (Like-Sm (LSM) domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_011940 PE=3 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 5.4e-39 Identity = 78/86 (90.70%), Postives = 85/86 (98.84%), Query Frame = 1
BLAST of Cucsa.057920 vs. TAIR10
Match: AT4G30220.2 (AT4G30220.2 small nuclear ribonucleoprotein F) HSP 1 Score: 164.9 bits (416), Expect = 2.3e-41 Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 1
BLAST of Cucsa.057920 vs. TAIR10
Match: AT2G14285.1 (AT2G14285.1 Small nuclear ribonucleoprotein family protein) HSP 1 Score: 114.8 bits (286), Expect = 2.7e-26 Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1
BLAST of Cucsa.057920 vs. TAIR10
Match: AT2G43810.1 (AT2G43810.1 Small nuclear ribonucleoprotein family protein) HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13 Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 1
BLAST of Cucsa.057920 vs. TAIR10
Match: AT3G59810.1 (AT3G59810.1 Small nuclear ribonucleoprotein family protein) HSP 1 Score: 70.9 bits (172), Expect = 4.6e-13 Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1
BLAST of Cucsa.057920 vs. NCBI nr
Match: gi|659127580|ref|XP_008463776.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo]) HSP 1 Score: 179.5 bits (454), Expect = 2.6e-42 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1
BLAST of Cucsa.057920 vs. NCBI nr
Match: gi|703141767|ref|XP_010107585.1| (hypothetical protein L484_024441 [Morus notabilis]) HSP 1 Score: 173.3 bits (438), Expect = 1.8e-40 Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of Cucsa.057920 vs. NCBI nr
Match: gi|1009105384|ref|XP_015883339.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Ziziphus jujuba]) HSP 1 Score: 172.2 bits (435), Expect = 4.1e-40 Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 1
BLAST of Cucsa.057920 vs. NCBI nr
Match: gi|596208261|ref|XP_007223820.1| (hypothetical protein PRUPE_ppa014017mg [Prunus persica]) HSP 1 Score: 171.8 bits (434), Expect = 5.4e-40 Identity = 81/86 (94.19%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of Cucsa.057920 vs. NCBI nr
Match: gi|470127843|ref|XP_004299869.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Fragaria vesca subsp. vesca]) HSP 1 Score: 171.8 bits (434), Expect = 5.4e-40 Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|