Cla97C11G223280 (gene) Watermelon (97103) v2

Overview
NameCla97C11G223280
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionSmall nuclear ribonucleoprotein f, putative
LocationCla97Chr11 : 29143970 .. 29145401 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATACAAAGGTTTGCTTCTATCTGCTGTTTGTTTCCTCGTTTCTCTTGCCTGCTGCAGTTTGTACTGACTTTCCTTTACATTTCAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTGCAGGTGTGTTTTCTACTTCAATTGAAACTAATTTAGACATTTCTTTTTGGGTGTGATTGTATCCTTATTGTTTTCGGGTCTCCCTCTGCTTCAGGACTTAGTTTATCACGTGATCCGTGAACTATTTTTGACTCTAATAAATTTATGTATTATGAGAAGAGAATTTAGTGTAATTGTCTTTTTTTCTTGAGAGATCGTTTAAACGTAGCACTAACCGATTCAATATCCTTTATCTCTGAATCTAATTTGATGTGTTCTGCTTGTATTAAAAGTTCTCTCTTACCACTATTTTTCATTTTCTGATTTTATAGGGCTTGGATTTTTTCTGAAAATCTAGTTTGGAAAATATGTTGTCCATTTTTGTTTTCTCAATATTTATTGTGCATGTTGAAATTGGTATGCATAGTCAAGTGGAGTGGTTTAGGCATCTCCACTTCCTCCAAGGAGTTGTAGGTTCGCCTCACCACTCCCGCATTTGTTTCAATATTCTCAAAAGGAAGATGAATTCATTTGTTCTAAAATGTAGATCATTGAGGTTATGAATTAAAAGATATGAAGTAAAATCAACCTTTTCTCTGAATTATTTGTTTGAAAAGTTGAAAATTTTATTTGAAAATGGTTTTCAAATAAGTCCACAGTTTCTTTCCGATGCTGATTCCAGCGTACAACTTTCTAAATACAGCTTGCTAATACTGAGGAATATATCGACGGACAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTAACCTTCTCTCAATGATTGAAAATCACAATATCTAATGCATCAATTCTTATTTGTTGGTAGTAATATGATAGGAATGTTGTTAGGAACATTATTAAACTGCCAAGGGCATATTATACTTTGCCAAGGGTAAGAAAAGAGGAGTGGAGAATTGTTTAGTAGTTAAAGCTTGAGTGAGTATATTCAAGAGAGGGAAAGTTCCAAATATCTCAAATACTTTGTTATCTTGTGGTTTTATATTTTAGCATATTTGGGTACCATCATAATATGTTCTGTTCATGATATAAATGCTTAAAGAACAATATGAGAAAATATGACACAAGTACGCATTTGCATTTATCTTACAACTGCAAGGATATGTTTGTAGTCTTTGTCTGGTGCATGGCGCACTTGGTGCCCTTTAAAATTTAGAGCTTTCATGCTTAACGACGATGAATTATTCCATAATTTTTGGCATATCATGTCAATTTTCCTGTTTTTTTCCTTGCAGGTGTAATAATGTTCTTTATCTTCGTGGAGTACCGGAGGATGAAGAGATTGAAGATGCCGAGCGTGACTAG

mRNA sequence

ATGGAATACAAAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTGCAGCTTGCTAATACTGAGGAATATATCGACGGACAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTGTAATAATGTTCTTTATCTTCGTGGAGTACCGGAGGATGAAGAGATTGAAGATGCCGAGCGTGACTAG

Coding sequence (CDS)

ATGGAATACAAAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTGCAGCTTGCTAATACTGAGGAATATATCGACGGACAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTGTAATAATGTTCTTTATCTTCGTGGAGTACCGGAGGATGAAGAGATTGAAGATGCCGAGCGTGACTAG

Protein sequence

MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Homology
[Close]
BLAST of Cla97C11G223280 vs. NCBI nr
Match: XP_008463776.1 (PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo] >XP_008463777.1 PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo] >XP_011654028.1 PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis sativus] >XP_004146017.2 PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
          MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER
Sbjct: 27 MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 86

Query: 61 D 62
          D
Sbjct: 87 D 87

[Close]
BLAST of Cla97C11G223280 vs. NCBI nr
Match: KGN55033.1 (hypothetical protein Csa_4G623900 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
          MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER
Sbjct: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]
BLAST of Cla97C11G223280 vs. NCBI nr
Match: XP_004299869.1 (PREDICTED: probable small nuclear ribonucleoprotein F [Fragaria vesca subsp. vesca] >XP_024169086.1 probable small nuclear ribonucleoprotein F [Rosa chinensis] >PRQ20710.1 putative sm-like protein Lsm6/SmF [Rosa chinensis])

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
          MEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIRCNNVLYLRGVPEDEEIEDAE+
Sbjct: 28 MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAEQ 87

Query: 61 D 62
          D
Sbjct: 88 D 88

[Close]
BLAST of Cla97C11G223280 vs. NCBI nr
Match: XP_015883339.1 (probable small nuclear ribonucleoprotein F [Ziziphus jujuba])

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
          MEYKGFLVSVDSYMNLQLANTEEYIDGQF+G+LGEILIRCNNVLYLRGVPEDEEIEDAER
Sbjct: 31 MEYKGFLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDEEIEDAER 90

Query: 61 D 62
          D
Sbjct: 91 D 91

[Close]
BLAST of Cla97C11G223280 vs. NCBI nr
Match: OWM84341.1 (hypothetical protein CDL15_Pgr027110 [Punica granatum])

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
           MEYKGFLVSVDSYMNLQLANTEEYI+GQFTGSLGEILIRCNNVLYLRGVPEDEEIEDA+R
Sbjct: 90  MEYKGFLVSVDSYMNLQLANTEEYIEGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDADR 149

Query: 61  D 62
           D
Sbjct: 150 D 150

[Close]
BLAST of Cla97C11G223280 vs. TrEMBL
Match: tr|A0A1S3CKH5|A0A1S3CKH5_CUCME (probable small nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC103501840 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
          MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER
Sbjct: 27 MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 86

Query: 61 D 62
          D
Sbjct: 87 D 87

[Close]
BLAST of Cla97C11G223280 vs. TrEMBL
Match: tr|A0A0A0L003|A0A0A0L003_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623900 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
          MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER
Sbjct: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]
BLAST of Cla97C11G223280 vs. TrEMBL
Match: tr|W9SLN6|W9SLN6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024441 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.8e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1   MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
           MEYKGFLVSVDSYMNLQLANTEE+IDGQFTG+LGEILIRCNNVLYLRGVPEDEEIEDAER
Sbjct: 49  MEYKGFLVSVDSYMNLQLANTEEFIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAER 108

Query: 61  D 62
           D
Sbjct: 109 D 109

[Close]
BLAST of Cla97C11G223280 vs. TrEMBL
Match: tr|A0A2P5ESE5|A0A2P5ESE5_9ROSA (Sm-like protein Lsm6/SmF OS=Trema orientalis OX=63057 GN=TorRG33x02_156850 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.8e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
          MEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIRCNNVLYLRGVPEDEEIEDAER
Sbjct: 28 MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAER 87

Query: 61 D 62
          +
Sbjct: 88 E 88

[Close]
BLAST of Cla97C11G223280 vs. TrEMBL
Match: tr|A0A2P6PFK5|A0A2P6PFK5_ROSCH (Putative sm-like protein Lsm6/SmF OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0231121 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.8e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
          MEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIRCNNVLYLRGVPEDEEIEDAE+
Sbjct: 28 MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAEQ 87

Query: 61 D 62
          D
Sbjct: 88 D 88

[Close]
BLAST of Cla97C11G223280 vs. Swiss-Prot
Match: sp|Q9SUM2|RUXF_ARATH (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At4g30220 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-25
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
          MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++
Sbjct: 28 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 87

Query: 61 D 62
          D
Sbjct: 88 D 88

[Close]
BLAST of Cla97C11G223280 vs. Swiss-Prot
Match: sp|Q3T0Z8|RUXF_BOVIN (Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 7.4e-20
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE 55
          MEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of Cla97C11G223280 vs. Swiss-Prot
Match: sp|P62306|RUXF_HUMAN (Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.4e-20
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE 55
          MEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of Cla97C11G223280 vs. Swiss-Prot
Match: sp|P62307|RUXF_MOUSE (Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.4e-20
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE 55
          MEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of Cla97C11G223280 vs. Swiss-Prot
Match: sp|P62321|RUXF_XENLA (Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.4e-20
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE 55
          MEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of Cla97C11G223280 vs. TAIR10
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 115.9 bits (289), Expect = 8.6e-27
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
          MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++
Sbjct: 1  MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 60

Query: 61 D 62
          D
Sbjct: 61 D 61

[Close]
BLAST of Cla97C11G223280 vs. TAIR10
Match: AT4G30220.2 (small nuclear ribonucleoprotein F)

HSP 1 Score: 115.9 bits (289), Expect = 8.6e-27
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 60
          MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++
Sbjct: 36 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 95

Query: 61 D 62
          D
Sbjct: 96 D 96

[Close]
BLAST of Cla97C11G223280 vs. TAIR10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-08
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL 47
          ++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Sbjct: 35 VDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYI 80

[Close]
BLAST of Cla97C11G223280 vs. TAIR10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-08
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 0 

Query: 1  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGV 50
          ++Y+G L  +D YMN+ +  TEEY++GQ     G+  IR NNVLY+  V
Sbjct: 35 VDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTV 83

The following BLAST results are available for this feature:
BLAST of Cla97C11G223280 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008463776.12.0e-26100.00PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo] >XP_0084637... [more]
KGN55033.12.0e-26100.00hypothetical protein Csa_4G623900 [Cucumis sativus][more]
XP_004299869.11.3e-2596.72PREDICTED: probable small nuclear ribonucleoprotein F [Fragaria vesca subsp. ves... [more]
XP_015883339.11.3e-2596.72probable small nuclear ribonucleoprotein F [Ziziphus jujuba][more]
OWM84341.11.3e-2596.72hypothetical protein CDL15_Pgr027110 [Punica granatum][more]
BLAST of Cla97C11G223280 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CKH5|A0A1S3CKH5_CUCME1.4e-26100.00probable small nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC1035018... [more]
tr|A0A0A0L003|A0A0A0L003_CUCSA1.4e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623900 PE=3 SV=1[more]
tr|W9SLN6|W9SLN6_9ROSA8.8e-2696.72Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024441 PE=3 SV=1[more]
tr|A0A2P5ESE5|A0A2P5ESE5_9ROSA8.8e-2696.72Sm-like protein Lsm6/SmF OS=Trema orientalis OX=63057 GN=TorRG33x02_156850 PE=3 ... [more]
tr|A0A2P6PFK5|A0A2P6PFK5_ROSCH8.8e-2696.72Putative sm-like protein Lsm6/SmF OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g02... [more]
BLAST of Cla97C11G223280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SUM2|RUXF_ARATH1.5e-2586.89Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At... [more]
sp|Q3T0Z8|RUXF_BOVIN7.4e-2079.63Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2[more]
sp|P62306|RUXF_HUMAN7.4e-2079.63Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1[more]
sp|P62307|RUXF_MOUSE7.4e-2079.63Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1[more]
sp|P62321|RUXF_XENLA7.4e-2079.63Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1[more]
BLAST of Cla97C11G223280 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G14285.18.6e-2786.89Small nuclear ribonucleoprotein family protein[more]
AT4G30220.28.6e-2786.89small nuclear ribonucleoprotein F[more]
AT2G43810.12.3e-0843.48Small nuclear ribonucleoprotein family protein[more]
AT3G59810.12.3e-0844.90Small nuclear ribonucleoprotein family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
GO:0005732small nucleolar ribonucleoprotein complex
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR034100Sm_F
IPR016487Lsm6/sSmF
IPR001163LSM_dom_euk/arc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008380 RNA splicing
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005634 nucleus
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0030529 intracellular ribonucleoprotein complex
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G223280.1Cla97C11G223280.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..48
e-value: 1.8E-6
score: 37.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 2..46
e-value: 2.9E-14
score: 52.4
IPR016487Sm-like protein Lsm6/SmFPIRSFPIRSF006609snRNP_SmFcoord: 1..57
e-value: 7.7E-25
score: 84.6
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..54
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..60
e-value: 2.8E-20
score: 73.6
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Fcoord: 1..54
IPR034100Small nuclear ribonucleoprotein FCDDcd01722Sm_Fcoord: 1..48
e-value: 2.2864E-31
score: 104.602
IPR010920LSM domain superfamilySUPERFAMILYSSF50182Sm-like ribonucleoproteinscoord: 2..50

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C11G223280Cla023308Watermelon (97103) v1wmwmbB358
Cla97C11G223280MELO3C025666Melon (DHL92) v3.5.1mewmbB467
Cla97C11G223280ClCG11G017220Watermelon (Charleston Gray)wcgwmbB064
Cla97C11G223280CSPI04G22540Wild cucumber (PI 183967)cpiwmbB286
Cla97C11G223280Cucsa.057920Cucumber (Gy14) v1cgywmbB046
Cla97C11G223280Lsi04G019810Bottle gourd (USVL1VR-Ls)lsiwmbB266
Cla97C11G223280MELO3C025666.2Melon (DHL92) v3.6.1medwmbB460
Cla97C11G223280CsaV3_4G032850Cucumber (Chinese Long) v3cucwmbB281
Cla97C11G223280Bhi09G002905Wax gourdwgowmbB560
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C11G223280Silver-seed gourdcarwmbB0321
Cla97C11G223280Silver-seed gourdcarwmbB0657
Cla97C11G223280Cucumber (Gy14) v2cgybwmbB265
Cla97C11G223280Cucumber (Gy14) v2cgybwmbB269
Cla97C11G223280Cucurbita maxima (Rimu)cmawmbB021
Cla97C11G223280Cucurbita maxima (Rimu)cmawmbB454
Cla97C11G223280Cucurbita moschata (Rifu)cmowmbB009
Cla97C11G223280Cucurbita moschata (Rifu)cmowmbB436
Cla97C11G223280Cucumber (Chinese Long) v2cuwmbB279
Cla97C11G223280Bottle gourd (USVL1VR-Ls)lsiwmbB169