CSPI07G20300.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G20300.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Pentatricopeptide repeat-containing family protein
Location	Chr7 : 17661850 .. 17662476 (+)
Sequence length	411

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGAAGGGTGTTCGTAAGGATTTGCAATCGTACTTGTTATATATGGATATACAATGCAAAACTGGGAAGTCTTGGGAGGCTGTTAAATTGTACATGGAGATGAAAAATAAGGGAATGAAATTGGATGTTGTGGCCTATAATACAGCGATTCATGCAGTTGGGATTTCGGAAGATGTCGATTTCACCAACAGAGTGTTTCATGAGATGAAGGGAATGGGGTGTAAGCCTAACGTTGTGACTTGCAATACTATTATTAAGCTATTTTGTGAGAATGGAAGATTCAAGGATGCTCATGTGATTCTCGACCAAATGCTCAAATACTGTCCACCGAATGTTATCACCTATCATTGTTTTTTCAGGTCTCTTGAAAAGCTGAAAGAGATTCTCATGTTATCGACAGGATGATTAAACTTGGGGTTTATCCAAAAATGGATGCTGATGTGATGCTCATGAGTAAGTTTGGAAGGGGAGAGACAAATAGAGCACACAAGAACACATTGTTAAACATCTGGCAAACATGATTAACACGATATTACTAGTTAAGCTTTAATTTTGAATGTTGAAGTTTGTTCTTTTTTTTTAAAAAAAATAAAATTCATTCAGATTAGAGATATCATTGGC

mRNA sequence

ATGGGTAAGAAGGGTGTTCGTAAGGATTTGCAATCGTACTTGTTATATATGGATATACAATGCAAAACTGGGAAGTCTTGGGAGGCTGTTAAATTGTACATGGAGATGAAAAATAAGGGAATGAAATTGGATGTTGTGGCCTATAATACAGCGATTCATGCAGTTGGGATTTCGGAAGATGTCGATTTCACCAACAGAGTGTTTCATGAGATGAAGGGAATGGGGTGTAAGCCTAACGTTGTGACTTGCAATACTATTATTAAGCTATTTTGTGAGAATGGAAGATTCAAGGATGCTCATGTGATTCTCGACCAAATGCTCAAATACTGTCCACCGAATGTTATCACCTATCATTGTTTTTTCAGGTCTCTTGAAAAGCTGAAAGAGATTCTCATGTTATCGACAGGATGA

Coding sequence (CDS)

ATGGGTAAGAAGGGTGTTCGTAAGGATTTGCAATCGTACTTGTTATATATGGATATACAATGCAAAACTGGGAAGTCTTGGGAGGCTGTTAAATTGTACATGGAGATGAAAAATAAGGGAATGAAATTGGATGTTGTGGCCTATAATACAGCGATTCATGCAGTTGGGATTTCGGAAGATGTCGATTTCACCAACAGAGTGTTTCATGAGATGAAGGGAATGGGGTGTAAGCCTAACGTTGTGACTTGCAATACTATTATTAAGCTATTTTGTGAGAATGGAAGATTCAAGGATGCTCATGTGATTCTCGACCAAATGCTCAAATACTGTCCACCGAATGTTATCACCTATCATTGTTTTTTCAGGTCTCTTGAAAAGCTGAAAGAGATTCTCATGTTATCGACAGGATGA

Homology

[Close]

BLAST of CSPI07G20300.1 vs. Swiss-Prot
Match: PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-40
Identity = 82/134 (61.19%), Postives = 99/134 (73.88%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M  +GV KDL SY +YMDI CK+GK W+AVKLY EMK++ MKLDVVAYNT I A+G S+ 
Sbjct: 215 MDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQG 274

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
           V+F  RVF EM+  GC+PNV T NTIIKL CE+GR +DA+ +LD+M K  C P+ ITY C
Sbjct: 275 VEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMC 334

Query: 121 FFRSLEKLKEILML 134
            F  LEK  EIL L
Sbjct: 335 LFSRLEKPSEILSL 348

[Close]

BLAST of CSPI07G20300.1 vs. Swiss-Prot
Match: PPR5_ARATH (Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 4.2e-15
Identity = 45/131 (34.35%), Postives = 68/131 (51.91%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M  KG++ D+ +Y   +D+ CK  +  +A KL  +M+ +    DV+ Y T I  +G+   
Sbjct: 237 MKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQ 296

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
            D    V  EMK  GC P+V   N  I+ FC   R  DA  ++D+M+K    PN  TY+ 
Sbjct: 297 PDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNL 356

Query: 121 FFRSLEKLKEI 131
           FFR L    ++
Sbjct: 357 FFRVLSLANDL 367

[Close]

BLAST of CSPI07G20300.1 vs. Swiss-Prot
Match: PP344_ARATH (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-14
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 1


Query: 5   GVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISEDVDFT 64
           G+  D  +Y + M    K G+  EA+KL  EM   G + DV+  N+ I+ +  ++ VD  
Sbjct: 498 GLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEA 557

Query: 65  NRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQML-KYCPPNVITYHCFFRS 124
            ++F  MK M  KP VVT NT++    +NG+ ++A  + + M+ K CPPN IT++  F  
Sbjct: 558 WKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDC 617

Query: 125 LEKLKEILM 133
           L K  E+ +
Sbjct: 618 LCKNDEVTL 626

[Close]

BLAST of CSPI07G20300.1 vs. Swiss-Prot
Match: PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.6e-14
Identity = 46/137 (33.58%), Postives = 73/137 (53.28%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M   G    + +Y   ++  C TGK  +A+ +  +MK KG+  DVV+Y+T +     S D
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD 465

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITY-- 120
           VD   RV  EM   G KP+ +T +++I+ FCE  R K+A  + ++ML+   PP+  TY  
Sbjct: 466 VDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTA 525

Query: 121 ----HCFFRSLEKLKEI 131
               +C    LEK  ++
Sbjct: 526 LINAYCMEGDLEKALQL 542

[Close]

BLAST of CSPI07G20300.1 vs. Swiss-Prot
Match: PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.1e-13
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 1


Query: 9   DLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISEDVDFTNRVF 68
           DL +Y   +D  CK+G      K++ EM N G+K D  ++   IHA   + DV    +V 
Sbjct: 242 DLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVL 301

Query: 69  HEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLK-------YCPPNVITYHCFF 128
             MK     PNV T N IIK  C+N +  DA+++LD+M++       +   +++ YHC  
Sbjct: 302 DRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDH 361

Query: 129 RSLEKLKEIL 132
             + +  ++L
Sbjct: 362 CEVNRATKLL 371

[Close]

BLAST of CSPI07G20300.1 vs. TrEMBL
Match: A0A0A0K6U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432190 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 4.3e-75
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED
Sbjct: 141 MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 200

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF 120
           VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF
Sbjct: 201 VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF 260

Query: 121 FRSLEKLKEILMLSTG 137
           FRSLEKLKEILMLSTG
Sbjct: 261 FRSLEKLKEILMLSTG 276

[Close]

BLAST of CSPI07G20300.1 vs. TrEMBL
Match: A0A0A0KBR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432170 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.3e-59
Identity = 112/134 (83.58%), Postives = 120/134 (89.55%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M KKGVRKDL SY +YMDIQCK+GK W+AVKLY EMK KGMKLDVVAYNT IHAVGISE 
Sbjct: 213 MDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGISEG 272

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
           VDF +RVFHEMK MGCKPNVVTCNT+IKLFCENGRFKDAH++LDQMLK  C PNVITYHC
Sbjct: 273 VDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHC 332

Query: 121 FFRSLEKLKEILML 134
           FFRSLEK KEIL+L
Sbjct: 333 FFRSLEKPKEILVL 346

[Close]

BLAST of CSPI07G20300.1 vs. TrEMBL
Match: A0A061G8S5_THECC (Pentatricopeptide repeat (PPR) superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_027343 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.2e-46
Identity = 92/134 (68.66%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M KKGV+KDL SY +YMDI CK+GK W+AVKLY EMK KGMKLDVVAYNT I A+GISE 
Sbjct: 129 MDKKGVKKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIRAIGISEG 188

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
            DF   VF EM+ +GC+PNVVT NT+IKL CENGR + A+ +LDQMLK  C P+VITYHC
Sbjct: 189 ADFGVGVFREMRDLGCEPNVVTYNTVIKLLCENGRVRQAYAVLDQMLKKDCAPDVITYHC 248

Query: 121 FFRSLEKLKEILML 134
           FF  LEK +EIL L
Sbjct: 249 FFGCLEKPREILKL 262

[Close]

BLAST of CSPI07G20300.1 vs. TrEMBL
Match: A0A061G7W5_THECC (Pentatricopeptide repeat (PPR) superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_027343 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.2e-46
Identity = 92/134 (68.66%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M KKGV+KDL SY +YMDI CK+GK W+AVKLY EMK KGMKLDVVAYNT I A+GISE 
Sbjct: 109 MDKKGVKKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIRAIGISEG 168

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
            DF   VF EM+ +GC+PNVVT NT+IKL CENGR + A+ +LDQMLK  C P+VITYHC
Sbjct: 169 ADFGVGVFREMRDLGCEPNVVTYNTVIKLLCENGRVRQAYAVLDQMLKKDCAPDVITYHC 228

Query: 121 FFRSLEKLKEILML 134
           FF  LEK +EIL L
Sbjct: 229 FFGCLEKPREILKL 242

[Close]

BLAST of CSPI07G20300.1 vs. TrEMBL
Match: A0A061GFZ8_THECC (Pentatricopeptide repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_027343 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.2e-46
Identity = 92/134 (68.66%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M KKGV+KDL SY +YMDI CK+GK W+AVKLY EMK KGMKLDVVAYNT I A+GISE 
Sbjct: 222 MDKKGVKKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIRAIGISEG 281

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
            DF   VF EM+ +GC+PNVVT NT+IKL CENGR + A+ +LDQMLK  C P+VITYHC
Sbjct: 282 ADFGVGVFREMRDLGCEPNVVTYNTVIKLLCENGRVRQAYAVLDQMLKKDCAPDVITYHC 341

Query: 121 FFRSLEKLKEILML 134
           FF  LEK +EIL L
Sbjct: 342 FFGCLEKPREILKL 355

[Close]

BLAST of CSPI07G20300.1 vs. TAIR10
Match: AT1G80550.1 (AT1G80550.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 165.2 bits (417), Expect = 2.8e-41
Identity = 82/134 (61.19%), Postives = 99/134 (73.88%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M  +GV KDL SY +YMDI CK+GK W+AVKLY EMK++ MKLDVVAYNT I A+G S+ 
Sbjct: 215 MDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQG 274

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
           V+F  RVF EM+  GC+PNV T NTIIKL CE+GR +DA+ +LD+M K  C P+ ITY C
Sbjct: 275 VEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMC 334

Query: 121 FFRSLEKLKEILML 134
            F  LEK  EIL L
Sbjct: 335 LFSRLEKPSEILSL 348

[Close]

BLAST of CSPI07G20300.1 vs. TAIR10
Match: AT1G02420.1 (AT1G02420.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-16
Identity = 45/131 (34.35%), Postives = 68/131 (51.91%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M  KG++ D+ +Y   +D+ CK  +  +A KL  +M+ +    DV+ Y T I  +G+   
Sbjct: 237 MKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQ 296

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
            D    V  EMK  GC P+V   N  I+ FC   R  DA  ++D+M+K    PN  TY+ 
Sbjct: 297 PDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNL 356

Query: 121 FFRSLEKLKEI 131
           FFR L    ++
Sbjct: 357 FFRVLSLANDL 367

[Close]

BLAST of CSPI07G20300.1 vs. TAIR10
Match: AT4G31850.1 (AT4G31850.1 proton gradient regulation 3)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 1


Query: 5   GVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISEDVDFT 64
           G+  D  +Y + M    K G+  EA+KL  EM   G + DV+  N+ I+ +  ++ VD  
Sbjct: 498 GLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEA 557

Query: 65  NRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQML-KYCPPNVITYHCFFRS 124
            ++F  MK M  KP VVT NT++    +NG+ ++A  + + M+ K CPPN IT++  F  
Sbjct: 558 WKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDC 617

Query: 125 LEKLKEILM 133
           L K  E+ +
Sbjct: 618 LCKNDEVTL 626

[Close]

BLAST of CSPI07G20300.1 vs. TAIR10
Match: AT5G39710.1 (AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-15
Identity = 46/137 (33.58%), Postives = 73/137 (53.28%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M   G    + +Y   ++  C TGK  +A+ +  +MK KG+  DVV+Y+T +     S D
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD 465

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITY-- 120
           VD   RV  EM   G KP+ +T +++I+ FCE  R K+A  + ++ML+   PP+  TY  
Sbjct: 466 VDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTA 525

Query: 121 ----HCFFRSLEKLKEI 131
               +C    LEK  ++
Sbjct: 526 LINAYCMEGDLEKALQL 542

[Close]

BLAST of CSPI07G20300.1 vs. TAIR10
Match: AT1G52640.1 (AT1G52640.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-14
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 1


Query: 9   DLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISEDVDFTNRVF 68
           DL +Y   +D  CK+G      K++ EM N G+K D  ++   IHA   + DV    +V 
Sbjct: 242 DLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVL 301

Query: 69  HEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLK-------YCPPNVITYHCFF 128
             MK     PNV T N IIK  C+N +  DA+++LD+M++       +   +++ YHC  
Sbjct: 302 DRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDH 361

Query: 129 RSLEKLKEIL 132
             + +  ++L
Sbjct: 362 CEVNRATKLL 371

[Close]

BLAST of CSPI07G20300.1 vs. NCBI nr
Match: gi|778730467|ref|XP_011659789.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 6.1e-75
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED
Sbjct: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF 120
           VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF
Sbjct: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF 120

Query: 121 FRSLEKLKEILMLSTG 137
           FRSLEKLKEILMLSTG
Sbjct: 121 FRSLEKLKEILMLSTG 136

[Close]

BLAST of CSPI07G20300.1 vs. NCBI nr
Match: gi|700190005|gb|KGN45238.1| (hypothetical protein Csa_7G432190 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 6.1e-75
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED
Sbjct: 141 MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 200

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF 120
           VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF
Sbjct: 201 VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF 260

Query: 121 FRSLEKLKEILMLSTG 137
           FRSLEKLKEILMLSTG
Sbjct: 261 FRSLEKLKEILMLSTG 276

[Close]

BLAST of CSPI07G20300.1 vs. NCBI nr
Match: gi|778728988|ref|XP_011659515.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 6.2e-59
Identity = 112/134 (83.58%), Postives = 120/134 (89.55%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M KKGVRKDL SY +YMDIQCK+GK W+AVKLY EMK KGMKLDVVAYNT IHAVGISE 
Sbjct: 213 MDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGISEG 272

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
           VDF +RVFHEMK MGCKPNVVTCNT+IKLFCENGRFKDAH++LDQMLK  C PNVITYHC
Sbjct: 273 VDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHC 332

Query: 121 FFRSLEKLKEILML 134
           FFRSLEK KEIL+L
Sbjct: 333 FFRSLEKPKEILVL 346

[Close]

BLAST of CSPI07G20300.1 vs. NCBI nr
Match: gi|659122453|ref|XP_008461152.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 6.2e-59
Identity = 112/134 (83.58%), Postives = 120/134 (89.55%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M KKGVRKDL SY +YMDIQCK+GK W+AVKLY EMK KGMKLDVVAYNT IHAVGISE 
Sbjct: 213 MDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKQKGMKLDVVAYNTVIHAVGISEG 272

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
           VDF +RVFHEMK MGCKPNVVTCNT+IKLFCENGRFKDAH++LDQMLK  C PNVITYHC
Sbjct: 273 VDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHC 332

Query: 121 FFRSLEKLKEILML 134
           FFRSLEK KEIL+L
Sbjct: 333 FFRSLEKPKEILIL 346

[Close]

BLAST of CSPI07G20300.1 vs. NCBI nr
Match: gi|590615881|ref|XP_007023349.1| (Pentatricopeptide repeat (PPR) superfamily protein isoform 3 [Theobroma cacao])

HSP 1 Score: 192.6 bits (488), Expect = 4.6e-46
Identity = 92/134 (68.66%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M KKGV+KDL SY +YMDI CK+GK W+AVKLY EMK KGMKLDVVAYNT I A+GISE 
Sbjct: 129 MDKKGVKKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIRAIGISEG 188

Query: 61  VDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
            DF   VF EM+ +GC+PNVVT NT+IKL CENGR + A+ +LDQMLK  C P+VITYHC
Sbjct: 189 ADFGVGVFREMRDLGCEPNVVTYNTVIKLLCENGRVRQAYAVLDQMLKKDCAPDVITYHC 248

Query: 121 FFRSLEKLKEILML 134
           FF  LEK +EIL L
Sbjct: 249 FFGCLEKPREILKL 262

The following BLAST results are available for this feature:

BLAST of CSPI07G20300.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP136_ARATH	4.9e-40	61.19	Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidop...	[more]
PPR5_ARATH	4.2e-15	34.35	Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis th...	[more]
PP344_ARATH	2.7e-14	34.88	Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidop...	[more]
PP407_ARATH	4.6e-14	33.58	Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN...	[more]
PPR78_ARATH	5.1e-13	31.54	Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidop...	[more]

BLAST of CSPI07G20300.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6U8_CUCSA	4.3e-75	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432190 PE=4 SV=1	[more]
A0A0A0KBR1_CUCSA	4.3e-59	83.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432170 PE=4 SV=1	[more]
A0A061G8S5_THECC	3.2e-46	68.66	Pentatricopeptide repeat (PPR) superfamily protein isoform 3 OS=Theobroma cacao ...	[more]
A0A061G7W5_THECC	3.2e-46	68.66	Pentatricopeptide repeat (PPR) superfamily protein isoform 2 OS=Theobroma cacao ...	[more]
A0A061GFZ8_THECC	3.2e-46	68.66	Pentatricopeptide repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM...	[more]

BLAST of CSPI07G20300.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80550.1	2.8e-41	61.19	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G02420.1	2.4e-16	34.35	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G31850.1	1.5e-15	34.88	proton gradient regulation 3	[more]
AT5G39710.1	2.6e-15	33.58	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G52640.1	2.9e-14	31.54	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CSPI07G20300.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730467\|ref\|XP_011659789.1\|	6.1e-75	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial-...	[more]
gi\|700190005\|gb\|KGN45238.1\|	6.1e-75	100.00	hypothetical protein Csa_7G432190 [Cucumis sativus]	[more]
gi\|778728988\|ref\|XP_011659515.1\|	6.2e-59	83.58	PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial ...	[more]
gi\|659122453\|ref\|XP_008461152.1\|	6.2e-59	83.58	PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial ...	[more]
gi\|590615881\|ref\|XP_007023349.1\|	4.6e-46	68.66	Pentatricopeptide repeat (PPR) superfamily protein isoform 3 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G20300	CSPI07G20300	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G20300.1	CSPI07G20300.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G20300.1.cds1	CSPI07G20300.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G20300.1.utr3p1	CSPI07G20300.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 32..92 score: 1.2
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 81..108 score: 4.0E-7coord: 46..80 score: 3.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 79..109 score: 9.942coord: 9..43 score: 9.186coord: 44..78 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..133 score: 1.6
None	No IPR available	PANTHER	PTHR24015:SF812	SUBFAMILY NOT NAMED	coord: 1..133 score: 1.6