CSPI06G19170.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGGAGGTAAATCAAATAGAGGAGGAAGAGGAAACAGAAACAAACCTCGGTGTCAAATTTGTACAAAATTCGGTCACATTGTTGATCGATGCTACTTTCGATATGCTCCAAGAAATAATTCAGGTTTCTCTCCAAACTCATCTACACCTTCATATACTAATAATTCTTACAATCCACAGATGGCTGCCATGATTGCTGCTCCTGATCTGAATATTGATTCTAATTGGTACCCTGACTCTGGAGCTACAAACCACTTAACACACAGCTTGAGTAATCTATCCACTGGAGCTGATTATAATGGAGGAAATCAGATATATGCAGTAAATGGGTCAGGTTTGCCAATACTTTATTATGGTTCTTTGCATTTTAATTTAATTCATCATTTATTCCTTCAAAATCTTTGGTTCTGGAAAATTTACTTCATATCTCCTCCATTACAAAGTTTTTTTTGAATTTCATCCCGCTGTTTGTTATGTGAAGGATCAGGGAACTGGCCAAATTCTTCTCCAAGGACACCTCTGTAATGGTGTATACAAGTTTAGCCTCAAATCATCTTCTCCAAGTTTTTTGAAATTTGAATCTAATACTAGTCCTATTGCTTTAAGTATTGTCTTACATAATTCTCATGTGAATGATATTGATATTTGGCATAAGAGATTAAGTCATCCTCACTCAAATGTTATCCGAAATGCCTTGAAAAATGTTTATAATGCCAATATTAGTATGAATAAAATGAATTTATGTGAAGCATGTGCTCTAGAAAACATCATGCTCTTCCCTTTCCTACTTCAAATACTGAATATATATATCCTTTACAACTCATTGTATGTGATTTTTGGGACCCTGCTTTTAACCTATCTAAAAATGGCTGCGTATATTATATTAGTTTTGTTGATGCATATAGTAGATATACTTGGATTTATTTTCTTCAATCTAAGTTTGATGCATTTGTAGCCTTTCAAAAATTCAAAACATTCATTGAAAAACAACTTGGCCGACCAATCATAATCTTTCAAACTGACAGGGGAAGTGAATTCAAACCTTCCATACCTTACCTAAACAACCATGACGTTGAACATAGATTAACCTGTCCACACACTTCTCTCTCAAGCTACTTTACCTTTATCCTTTTGGGATGAAGCTTTCTCAACAACTGTGTATCTTATCAATCGCCTACCCACACCTATTCTTAATCACCTTAGTCCATTGGAAAAATTATTTGGTCAGGAAACCTAACTATCCTTCTCTAAAAAAATTTGGTTGTAAATGTTGTCCTTTCATCAAACCTTATAAATTCCACAAACTATCTTACAGATTCACATCATGTACCTTCTTAGGCTACAGTTCATCCCACAAAGGTTATAATTGCCTTTCTCAAGATGGTCGCATTTACATATCCAGACATGTTCTATTTGATGAAGATTCCTTTTCCTATGCATCTTTTTCATCTCATTGTAAAACTTTATCAACAAAAAGTGTCTTGGCTACTCCAATCCAGTCCATAGTCCATAAGCCAACAATGAATCATAATGAAGAGAGGCAACACACTAATACATTCACTGATAATAATGATAATTTGAATTCTACTGCTGTGTATCCCTTAGAAACAGGAAGTCAGGAACAATATGGAGATGAGTTACCAAGAGGAGACCGTGAGAATAAGCAAATATCATCACAGACCCAAGATGACTCTACCAATACAGATCAATCCTTAAATCTCAATACTCATCCAATGGTAACTCGGAGCAAAAGTGGTATTTATAAACCTAAACCTTTCTTAATTGATTATACTGAGACTGAAGCTAAAGAAGCTTTAAAGCGTCCTCACTGGAGGAAAGCTATGGAAGAAGATTTTAAAGCTTTAAAACAAAATAACACATGGAGTCTCACTCAGAAACAGGAAAATCAAAAAATGTATTGTGTTGGCTGTAAA ATGGTGGAGGTAAATCAAATAGAGGAGGAAGAGGAAACAGAAACAAACCTCGGTGTCAAATTTGTACAAAATTCGGTCACATTGTTGATCGATGCTACTTTCGATATGCTCCAAGAAATAATTCAGATGGCTGCCATGATTGCTGCTCCTGATCTGAATATTGATTCTAATTGGTACCCTGACTCTGGAGCTACAAACCACTTAACACACAGCTTGAGTAATCTATCCACTGGAGCTGATTATAATGGAGGAAATCAGATATATGCAGTAAATGGGTCAGGATCAGGGAACTGGCCAAATTCTTCTCCAAGGACACCTCTTTCATCCCACAAAGGTTATAATTGCCTTTCTCAAGATGGTCGCATTTACATATCCAGACATGTTCTATTTGATGAAGATTCCTTTTCCTATGCATCTTTTTCATCTCATTGTAAAACTTTATCAACAAAAAGTGTCTTGGCTACTCCAATCCAGTCCATAGTCCATAAGCCAACAATGAATCATAATGAAGAGAGGCAACACACTAATACATTCACTGATAATAATGATAATTTGAATTCTACTGCTGTGTATCCCTTAGAAACAGGAAGTCAGGAACAATATGGAGATGAGTTACCAAGAGGAGACCGTGAGAATAAGCAAATATCATCACAGACCCAAGATGACTCTACCAATACAGATCAATCCTTAAATCTCAATACTCATCCAATGGTAACTCGGAGCAAAAGTGGTATTTATAAACCTAAACCTTTCTTAATTGATTATACTGAGACTGAAGCTAAAGAAGCTTTAAAGCGTCCTCACTGGAGGAAAGCTATGGAAGAAGATTTTAAAGCTTTAAAACAAAATAACACATGGAGTCTCACTCAGAAACAGGAAAATCAAAAAATGTATTGTGTTGGCTGTAAA ATGGTGGAGGTAAATCAAATAGAGGAGGAAGAGGAAACAGAAACAAACCTCGGTGTCAAATTTGTACAAAATTCGGTCACATTGTTGATCGATGCTACTTTCGATATGCTCCAAGAAATAATTCAGATGGCTGCCATGATTGCTGCTCCTGATCTGAATATTGATTCTAATTGGTACCCTGACTCTGGAGCTACAAACCACTTAACACACAGCTTGAGTAATCTATCCACTGGAGCTGATTATAATGGAGGAAATCAGATATATGCAGTAAATGGGTCAGGATCAGGGAACTGGCCAAATTCTTCTCCAAGGACACCTCTTTCATCCCACAAAGGTTATAATTGCCTTTCTCAAGATGGTCGCATTTACATATCCAGACATGTTCTATTTGATGAAGATTCCTTTTCCTATGCATCTTTTTCATCTCATTGTAAAACTTTATCAACAAAAAGTGTCTTGGCTACTCCAATCCAGTCCATAGTCCATAAGCCAACAATGAATCATAATGAAGAGAGGCAACACACTAATACATTCACTGATAATAATGATAATTTGAATTCTACTGCTGTGTATCCCTTAGAAACAGGAAGTCAGGAACAATATGGAGATGAGTTACCAAGAGGAGACCGTGAGAATAAGCAAATATCATCACAGACCCAAGATGACTCTACCAATACAGATCAATCCTTAAATCTCAATACTCATCCAATGGTAACTCGGAGCAAAAGTGGTATTTATAAACCTAAACCTTTCTTAATTGATTATACTGAGACTGAAGCTAAAGAAGCTTTAAAGCGTCCTCACTGGAGGAAAGCTATGGAAGAAGATTTTAAAGCTTTAAAACAAAATAACACATGGAGTCTCACTCAGAAACAGGAAAATCAAAAAATGTATTGTGTTGGCTGTAAA
BLAST of CSPI06G19170.1 vs. TrEMBL
Match: A0A151TVT8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_010404 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 4.9e-15 Identity = 72/204 (35.29%), Postives = 96/204 (47.06%), Query Frame = 1
BLAST of CSPI06G19170.1 vs. TrEMBL
Match: A5BK17_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024648 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14 Identity = 66/195 (33.85%), Postives = 96/195 (49.23%), Query Frame = 1
BLAST of CSPI06G19170.1 vs. TrEMBL
Match: A0A151RDA3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_038219 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.9e-14 Identity = 68/200 (34.00%), Postives = 100/200 (50.00%), Query Frame = 1
BLAST of CSPI06G19170.1 vs. TrEMBL
Match: A0A151TE57_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_011518 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.9e-14 Identity = 68/200 (34.00%), Postives = 100/200 (50.00%), Query Frame = 1
BLAST of CSPI06G19170.1 vs. TrEMBL
Match: A0A151S9Q4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_026657 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.4e-14 Identity = 69/200 (34.50%), Postives = 98/200 (49.00%), Query Frame = 1
BLAST of CSPI06G19170.1 vs. NCBI nr
Match: gi|659071665|ref|XP_008461310.1| (PREDICTED: uncharacterized protein LOC103499934 [Cucumis melo]) HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19 Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1
BLAST of CSPI06G19170.1 vs. NCBI nr
Match: gi|1012359976|gb|KYP71160.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]) HSP 1 Score: 90.1 bits (222), Expect = 7.1e-15 Identity = 72/204 (35.29%), Postives = 96/204 (47.06%), Query Frame = 1
BLAST of CSPI06G19170.1 vs. NCBI nr
Match: gi|147783806|emb|CAN74695.1| (hypothetical protein VITISV_024648 [Vitis vinifera]) HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14 Identity = 66/195 (33.85%), Postives = 96/195 (49.23%), Query Frame = 1
BLAST of CSPI06G19170.1 vs. NCBI nr
Match: gi|1012328826|gb|KYP40443.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan]) HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14 Identity = 68/200 (34.00%), Postives = 100/200 (50.00%), Query Frame = 1
BLAST of CSPI06G19170.1 vs. NCBI nr
Match: gi|1012354099|gb|KYP65286.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan]) HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14 Identity = 68/200 (34.00%), Postives = 100/200 (50.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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